FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1371, 195 aa
  1>>>pF1KE1371 195 - 195 aa - 195 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.5820+/-0.000284; mu= 0.7680+/- 0.018
 mean_var=201.8209+/-40.237, 0's: 0 Z-trim(124.8): 2  B-trim: 0 in 0/62
 Lambda= 0.090280
 statistics sampled from 47101 (47103) to 47101 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.83), E-opt: 0.2 (0.552), width:  16
 Scan time:  6.260

The best scores are:                                      opt bits E(85289)
NP_000092 (OMIM: 233690,608508) cytochrome b-245 l ( 195) 1321 183.0 2.7e-46
XP_011521207 (OMIM: 233690,608508) PREDICTED: cyto ( 210)  818 117.5 1.5e-26


>>NP_000092 (OMIM: 233690,608508) cytochrome b-245 light  (195 aa)
 initn: 1321 init1: 1321 opt: 1321  Z-score: 952.1  bits: 183.0 E(85289): 2.7e-46
Smith-Waterman score: 1321; 99.5% identity (100.0% similar) in 195 aa overlap (1-195:1-195)

               10        20        30        40        50        60
pF1KE1 MGQIEWAMWANEQALASGLILITGGIVATAGRFTQWYFGAYSIVAGVFVCLLEYPRGKRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MGQIEWAMWANEQALASGLILITGGIVATAGRFTQWYFGAYSIVAGVFVCLLEYPRGKRK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 KGSTMERWGQKYMTAVVKLFGPFTRNYYVRAVLHLLLSVPAGFLLATILGTACLAIASGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 KGSTMERWGQKYMTAVVKLFGPFTRNYYVRAVLHLLLSVPAGFLLATILGTACLAIASGI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 YLLAAVRGEQWTPIEPKPRERPQIGGTIKQPPSNPPPRPPAEARKKPSEEEAAAAAGGPP
       :::::::::::::::::::::::::::::::::::::::::::::::::::::.::::::
NP_000 YLLAAVRGEQWTPIEPKPRERPQIGGTIKQPPSNPPPRPPAEARKKPSEEEAAVAAGGPP
              130       140       150       160       170       180

              190     
pF1KE1 GGPQVNPIPVTDEVV
       :::::::::::::::
NP_000 GGPQVNPIPVTDEVV
              190     

>>XP_011521207 (OMIM: 233690,608508) PREDICTED: cytochro  (210 aa)
 initn: 842 init1: 818 opt: 818  Z-score: 597.6  bits: 117.5 E(85289): 1.5e-26
Smith-Waterman score: 818; 98.4% identity (99.2% similar) in 126 aa overlap (1-126:1-126)

               10        20        30        40        50        60
pF1KE1 MGQIEWAMWANEQALASGLILITGGIVATAGRFTQWYFGAYSIVAGVFVCLLEYPRGKRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MGQIEWAMWANEQALASGLILITGGIVATAGRFTQWYFGAYSIVAGVFVCLLEYPRGKRK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 KGSTMERWGQKYMTAVVKLFGPFTRNYYVRAVLHLLLSVPAGFLLATILGTACLAIASGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KGSTMERWGQKYMTAVVKLFGPFTRNYYVRAVLHLLLSVPAGFLLATILGTACLAIASGI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 YLLAAVRGEQWTPIEPKPRERPQIGGTIKQPPSNPPPRPPAEARKKPSEEEAAAAAGGPP
       :::. :                                                      
XP_011 YLLSQVPPARRGNCPPLAVRLLVCVRGKGAALSVYAFRVWKWSSVSSLTDLPPAELSFRT
              130       140       150       160       170       180




195 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 02:16:10 2016 done: Mon Nov  7 02:16:11 2016
 Total Scan time:  6.260 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]