FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1370, 249 aa
  1>>>pF1KE1370 249 - 249 aa - 249 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0783+/-0.000816; mu= 15.1809+/- 0.049
 mean_var=53.2201+/-10.507, 0's: 0 Z-trim(104.6): 21  B-trim: 16 in 1/52
 Lambda= 0.175807
 statistics sampled from 7971 (7977) to 7971 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.632), E-opt: 0.2 (0.245), width:  16
 Scan time:  2.190

The best scores are:                                      opt bits E(32554)
CCDS8566.1 TPI1 gene_id:7167|Hs108|chr12           ( 249) 1649 426.1 1.1e-119
CCDS53740.1 TPI1 gene_id:7167|Hs108|chr12          ( 286) 1649 426.1 1.3e-119
CCDS58206.1 TPI1 gene_id:7167|Hs108|chr12          ( 167) 1096 285.7 1.3e-77


>>CCDS8566.1 TPI1 gene_id:7167|Hs108|chr12                (249 aa)
 initn: 1649 init1: 1649 opt: 1649  Z-score: 2262.1  bits: 426.1 E(32554): 1.1e-119
Smith-Waterman score: 1649; 100.0% identity (100.0% similar) in 249 aa overlap (1-249:1-249)

               10        20        30        40        50        60
pF1KE1 MAPSRKFFVGGNWKMNGRKQSLGELIGTLNAAKVPADTEVVCAPPTAYIDFARQKLDPKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 MAPSRKFFVGGNWKMNGRKQSLGELIGTLNAAKVPADTEVVCAPPTAYIDFARQKLDPKI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 AVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 AVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALAE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 GLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 GLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 QAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 QAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPE
              190       200       210       220       230       240

                
pF1KE1 FVDIINAKQ
       :::::::::
CCDS85 FVDIINAKQ
                

>>CCDS53740.1 TPI1 gene_id:7167|Hs108|chr12               (286 aa)
 initn: 1649 init1: 1649 opt: 1649  Z-score: 2261.2  bits: 426.1 E(32554): 1.3e-119
Smith-Waterman score: 1649; 100.0% identity (100.0% similar) in 249 aa overlap (1-249:38-286)

                                             10        20        30
pF1KE1                               MAPSRKFFVGGNWKMNGRKQSLGELIGTLN
                                     ::::::::::::::::::::::::::::::
CCDS53 AEFHFAALYISGQWPRLRADTDLQRLGSSAMAPSRKFFVGGNWKMNGRKQSLGELIGTLN
        10        20        30        40        50        60       

               40        50        60        70        80        90
pF1KE1 AAKVPADTEVVCAPPTAYIDFARQKLDPKIAVAAQNCYKVTNGAFTGEISPGMIKDCGAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 AAKVPADTEVVCAPPTAYIDFARQKLDPKIAVAAQNCYKVTNGAFTGEISPGMIKDCGAT
        70        80        90       100       110       120       

              100       110       120       130       140       150
pF1KE1 WVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 WVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKV
       130       140       150       160       170       180       

              160       170       180       190       200       210
pF1KE1 IADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 IADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYG
       190       200       210       220       230       240       

              220       230       240         
pF1KE1 GSVTGATCKELASQPDVDGFLVGGASLKPEFVDIINAKQ
       :::::::::::::::::::::::::::::::::::::::
CCDS53 GSVTGATCKELASQPDVDGFLVGGASLKPEFVDIINAKQ
       250       260       270       280      

>>CCDS58206.1 TPI1 gene_id:7167|Hs108|chr12               (167 aa)
 initn: 1096 init1: 1096 opt: 1096  Z-score: 1506.9  bits: 285.7 E(32554): 1.3e-77
Smith-Waterman score: 1096; 100.0% identity (100.0% similar) in 167 aa overlap (83-249:1-167)

             60        70        80        90       100       110  
pF1KE1 RQKLDPKIAVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQ
                                     ::::::::::::::::::::::::::::::
CCDS58                               MIKDCGATWVVLGHSERRHVFGESDELIGQ
                                             10        20        30

            120       130       140       150       160       170  
pF1KE1 KVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 KVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIG
               40        50        60        70        80        90

            180       190       200       210       220       230  
pF1KE1 TGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 TGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLV
              100       110       120       130       140       150

            240         
pF1KE1 GGASLKPEFVDIINAKQ
       :::::::::::::::::
CCDS58 GGASLKPEFVDIINAKQ
              160       




249 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 02:11:09 2016 done: Mon Nov  7 02:11:09 2016
 Total Scan time:  2.190 Total Display time: -0.050

Function used was FASTA [36.3.4 Apr, 2011]