Result of FASTA (omim) for
pFN21AE1367
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1367, 370 aa
1>>>pF1KE1367 370 - 370 aa - 370 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.0564+/-0.000325; mu= 14.1759+/- 0.020
mean_var=94.5860+/-18.772, 0's: 0 Z-trim(116.9): 45 B-trim: 0 in 0/55
Lambda= 0.131874
statistics sampled from 28411 (28456) to 28411 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.696), E-opt: 0.2 (0.334), width: 16
Scan time: 9.230
The best scores are: opt bits E(85289)
NP_057227 (OMIM: 606610) NSFL1 cofactor p47 isofor ( 370) 2396 465.8 7e-131
NP_001193665 (OMIM: 606610) NSFL1 cofactor p47 iso ( 372) 2382 463.2 4.4e-130
XP_011527603 (OMIM: 606610) PREDICTED: NSFL1 cofac ( 373) 2380 462.8 5.8e-130
XP_011527602 (OMIM: 606610) PREDICTED: NSFL1 cofac ( 375) 2366 460.1 3.7e-129
XP_016883445 (OMIM: 606610) PREDICTED: NSFL1 cofac ( 320) 1980 386.6 4.1e-107
XP_011527604 (OMIM: 606610) PREDICTED: NSFL1 cofac ( 322) 1966 384.0 2.6e-106
XP_011527606 (OMIM: 606610) PREDICTED: NSFL1 cofac ( 319) 1965 383.8 3e-106
XP_016883446 (OMIM: 606610) PREDICTED: NSFL1 cofac ( 321) 1951 381.1 1.9e-105
XP_011527607 (OMIM: 606610) PREDICTED: NSFL1 cofac ( 279) 1700 333.3 4e-91
XP_006723657 (OMIM: 606610) PREDICTED: NSFL1 cofac ( 259) 1587 311.8 1.1e-84
XP_006723656 (OMIM: 606610) PREDICTED: NSFL1 cofac ( 261) 1584 311.2 1.7e-84
XP_006723655 (OMIM: 606610) PREDICTED: NSFL1 cofac ( 261) 1584 311.2 1.7e-84
XP_016883447 (OMIM: 606610) PREDICTED: NSFL1 cofac ( 285) 1584 311.3 1.8e-84
NP_061327 (OMIM: 606610) NSFL1 cofactor p47 isofor ( 339) 1234 244.7 2.3e-64
NP_001071087 (OMIM: 610686) UBX domain-containing ( 331) 1031 206.1 9.6e-53
NP_001317464 (OMIM: 610686) UBX domain-containing ( 196) 402 86.3 6.6e-17
XP_005251222 (OMIM: 610686) PREDICTED: UBX domain- ( 285) 390 84.1 4.4e-16
>>NP_057227 (OMIM: 606610) NSFL1 cofactor p47 isoform a (370 aa)
initn: 2396 init1: 2396 opt: 2396 Z-score: 2470.8 bits: 465.8 E(85289): 7e-131
Smith-Waterman score: 2396; 100.0% identity (100.0% similar) in 370 aa overlap (1-370:1-370)
10 20 30 40 50 60
pF1KE1 MAAERQEALREFVAVTGAEEDRARFFLESAGWDLQIALASFYEDGGDEDIVTISQATPSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MAAERQEALREFVAVTGAEEDRARFFLESAGWDLQIALASFYEDGGDEDIVTISQATPSS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 VSRGTAPSDNRVTSFRDLIHDQDEDEEEEEGQRFYAGGSERSGQQIVGPPRKKSPNELVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 VSRGTAPSDNRVTSFRDLIHDQDEDEEEEEGQRFYAGGSERSGQQIVGPPRKKSPNELVD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 DLFKGAKEHGAVAVERVTKSPGETSKPRPFAGGGYRLGAAPEEESAYVAGEKRQHSSQDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 DLFKGAKEHGAVAVERVTKSPGETSKPRPFAGGGYRLGAAPEEESAYVAGEKRQHSSQDV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 HVVLKLWKSGFSLDNGELRSYQDPSNAQFLESIRRGEVPAELRRLAHGGQVNLDMEDHRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 HVVLKLWKSGFSLDNGELRSYQDPSNAQFLESIRRGEVPAELRRLAHGGQVNLDMEDHRD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 EDFVKPKGAFKAFTGEGQKLGSTAPQVLSTSSPAQQAENEAKASSSILIDESEPTTNIQI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 EDFVKPKGAFKAFTGEGQKLGSTAPQVLSTSSPAQQAENEAKASSSILIDESEPTTNIQI
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 RLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFILMTTFPNKELADESQTLKEANL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 RLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFILMTTFPNKELADESQTLKEANL
310 320 330 340 350 360
370
pF1KE1 LNAVIVQRLT
::::::::::
NP_057 LNAVIVQRLT
370
>>NP_001193665 (OMIM: 606610) NSFL1 cofactor p47 isoform (372 aa)
initn: 1844 init1: 1844 opt: 2382 Z-score: 2456.3 bits: 463.2 E(85289): 4.4e-130
Smith-Waterman score: 2382; 99.5% identity (99.5% similar) in 372 aa overlap (1-370:1-372)
10 20 30 40 50 60
pF1KE1 MAAERQEALREFVAVTGAEEDRARFFLESAGWDLQIALASFYEDGGDEDIVTISQATPSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAAERQEALREFVAVTGAEEDRARFFLESAGWDLQIALASFYEDGGDEDIVTISQATPSS
10 20 30 40 50 60
70 80 90 100 110
pF1KE1 VSRGTAPSDNRVTSFRDLIHDQDEDEEEEEGQR--FYAGGSERSGQQIVGPPRKKSPNEL
::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::
NP_001 VSRGTAPSDNRVTSFRDLIHDQDEDEEEEEGQRSRFYAGGSERSGQQIVGPPRKKSPNEL
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE1 VDDLFKGAKEHGAVAVERVTKSPGETSKPRPFAGGGYRLGAAPEEESAYVAGEKRQHSSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VDDLFKGAKEHGAVAVERVTKSPGETSKPRPFAGGGYRLGAAPEEESAYVAGEKRQHSSQ
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE1 DVHVVLKLWKSGFSLDNGELRSYQDPSNAQFLESIRRGEVPAELRRLAHGGQVNLDMEDH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DVHVVLKLWKSGFSLDNGELRSYQDPSNAQFLESIRRGEVPAELRRLAHGGQVNLDMEDH
190 200 210 220 230 240
240 250 260 270 280 290
pF1KE1 RDEDFVKPKGAFKAFTGEGQKLGSTAPQVLSTSSPAQQAENEAKASSSILIDESEPTTNI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RDEDFVKPKGAFKAFTGEGQKLGSTAPQVLSTSSPAQQAENEAKASSSILIDESEPTTNI
250 260 270 280 290 300
300 310 320 330 340 350
pF1KE1 QIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFILMTTFPNKELADESQTLKEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFILMTTFPNKELADESQTLKEA
310 320 330 340 350 360
360 370
pF1KE1 NLLNAVIVQRLT
::::::::::::
NP_001 NLLNAVIVQRLT
370
>>XP_011527603 (OMIM: 606610) PREDICTED: NSFL1 cofactor (373 aa)
initn: 1970 init1: 1970 opt: 2380 Z-score: 2454.3 bits: 462.8 E(85289): 5.8e-130
Smith-Waterman score: 2380; 99.2% identity (99.2% similar) in 373 aa overlap (1-370:1-373)
10 20 30 40 50 60
pF1KE1 MAAERQEALREFVAVTGAEEDRARFFLESAGWDLQIALASFYEDGGDEDIVTISQATPSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAAERQEALREFVAVTGAEEDRARFFLESAGWDLQIALASFYEDGGDEDIVTISQATPSS
10 20 30 40 50 60
70 80 90 100 110
pF1KE1 VSRGTAP---SDNRVTSFRDLIHDQDEDEEEEEGQRFYAGGSERSGQQIVGPPRKKSPNE
::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VSRGTAPREKSDNRVTSFRDLIHDQDEDEEEEEGQRFYAGGSERSGQQIVGPPRKKSPNE
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE1 LVDDLFKGAKEHGAVAVERVTKSPGETSKPRPFAGGGYRLGAAPEEESAYVAGEKRQHSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LVDDLFKGAKEHGAVAVERVTKSPGETSKPRPFAGGGYRLGAAPEEESAYVAGEKRQHSS
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE1 QDVHVVLKLWKSGFSLDNGELRSYQDPSNAQFLESIRRGEVPAELRRLAHGGQVNLDMED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QDVHVVLKLWKSGFSLDNGELRSYQDPSNAQFLESIRRGEVPAELRRLAHGGQVNLDMED
190 200 210 220 230 240
240 250 260 270 280 290
pF1KE1 HRDEDFVKPKGAFKAFTGEGQKLGSTAPQVLSTSSPAQQAENEAKASSSILIDESEPTTN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HRDEDFVKPKGAFKAFTGEGQKLGSTAPQVLSTSSPAQQAENEAKASSSILIDESEPTTN
250 260 270 280 290 300
300 310 320 330 340 350
pF1KE1 IQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFILMTTFPNKELADESQTLKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFILMTTFPNKELADESQTLKE
310 320 330 340 350 360
360 370
pF1KE1 ANLLNAVIVQRLT
:::::::::::::
XP_011 ANLLNAVIVQRLT
370
>>XP_011527602 (OMIM: 606610) PREDICTED: NSFL1 cofactor (375 aa)
initn: 1844 init1: 1844 opt: 2366 Z-score: 2439.8 bits: 460.1 E(85289): 3.7e-129
Smith-Waterman score: 2366; 98.7% identity (98.7% similar) in 375 aa overlap (1-370:1-375)
10 20 30 40 50 60
pF1KE1 MAAERQEALREFVAVTGAEEDRARFFLESAGWDLQIALASFYEDGGDEDIVTISQATPSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAAERQEALREFVAVTGAEEDRARFFLESAGWDLQIALASFYEDGGDEDIVTISQATPSS
10 20 30 40 50 60
70 80 90 100 110
pF1KE1 VSRGTAP---SDNRVTSFRDLIHDQDEDEEEEEGQR--FYAGGSERSGQQIVGPPRKKSP
::::::: :::::::::::::::::::::::::: ::::::::::::::::::::::
XP_011 VSRGTAPREKSDNRVTSFRDLIHDQDEDEEEEEGQRSRFYAGGSERSGQQIVGPPRKKSP
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE1 NELVDDLFKGAKEHGAVAVERVTKSPGETSKPRPFAGGGYRLGAAPEEESAYVAGEKRQH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NELVDDLFKGAKEHGAVAVERVTKSPGETSKPRPFAGGGYRLGAAPEEESAYVAGEKRQH
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE1 SSQDVHVVLKLWKSGFSLDNGELRSYQDPSNAQFLESIRRGEVPAELRRLAHGGQVNLDM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SSQDVHVVLKLWKSGFSLDNGELRSYQDPSNAQFLESIRRGEVPAELRRLAHGGQVNLDM
190 200 210 220 230 240
240 250 260 270 280 290
pF1KE1 EDHRDEDFVKPKGAFKAFTGEGQKLGSTAPQVLSTSSPAQQAENEAKASSSILIDESEPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EDHRDEDFVKPKGAFKAFTGEGQKLGSTAPQVLSTSSPAQQAENEAKASSSILIDESEPT
250 260 270 280 290 300
300 310 320 330 340 350
pF1KE1 TNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFILMTTFPNKELADESQTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFILMTTFPNKELADESQTL
310 320 330 340 350 360
360 370
pF1KE1 KEANLLNAVIVQRLT
:::::::::::::::
XP_011 KEANLLNAVIVQRLT
370
>>XP_016883445 (OMIM: 606610) PREDICTED: NSFL1 cofactor (320 aa)
initn: 1980 init1: 1980 opt: 1980 Z-score: 2043.9 bits: 386.6 E(85289): 4.1e-107
Smith-Waterman score: 1980; 99.0% identity (99.7% similar) in 307 aa overlap (64-370:14-320)
40 50 60 70 80 90
pF1KE1 LQIALASFYEDGGDEDIVTISQATPSSVSRGTAPSDNRVTSFRDLIHDQDEDEEEEEGQR
:.. ::::::::::::::::::::::::::
XP_016 MLPPCQHLPPLYAGSSKSDNRVTSFRDLIHDQDEDEEEEEGQR
10 20 30 40
100 110 120 130 140 150
pF1KE1 FYAGGSERSGQQIVGPPRKKSPNELVDDLFKGAKEHGAVAVERVTKSPGETSKPRPFAGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FYAGGSERSGQQIVGPPRKKSPNELVDDLFKGAKEHGAVAVERVTKSPGETSKPRPFAGG
50 60 70 80 90 100
160 170 180 190 200 210
pF1KE1 GYRLGAAPEEESAYVAGEKRQHSSQDVHVVLKLWKSGFSLDNGELRSYQDPSNAQFLESI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GYRLGAAPEEESAYVAGEKRQHSSQDVHVVLKLWKSGFSLDNGELRSYQDPSNAQFLESI
110 120 130 140 150 160
220 230 240 250 260 270
pF1KE1 RRGEVPAELRRLAHGGQVNLDMEDHRDEDFVKPKGAFKAFTGEGQKLGSTAPQVLSTSSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RRGEVPAELRRLAHGGQVNLDMEDHRDEDFVKPKGAFKAFTGEGQKLGSTAPQVLSTSSP
170 180 190 200 210 220
280 290 300 310 320 330
pF1KE1 AQQAENEAKASSSILIDESEPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AQQAENEAKASSSILIDESEPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMA
230 240 250 260 270 280
340 350 360 370
pF1KE1 ATSFILMTTFPNKELADESQTLKEANLLNAVIVQRLT
:::::::::::::::::::::::::::::::::::::
XP_016 ATSFILMTTFPNKELADESQTLKEANLLNAVIVQRLT
290 300 310 320
>>XP_011527604 (OMIM: 606610) PREDICTED: NSFL1 cofactor (322 aa)
initn: 1844 init1: 1844 opt: 1966 Z-score: 2029.5 bits: 384.0 E(85289): 2.6e-106
Smith-Waterman score: 1966; 98.4% identity (99.0% similar) in 309 aa overlap (64-370:14-322)
40 50 60 70 80 90
pF1KE1 LQIALASFYEDGGDEDIVTISQATPSSVSRGTAPSDNRVTSFRDLIHDQDEDEEEEEGQR
:.. ::::::::::::::::::::::::::
XP_011 MLPPCQHLPPLYAGSSKSDNRVTSFRDLIHDQDEDEEEEEGQR
10 20 30 40
100 110 120 130 140 150
pF1KE1 --FYAGGSERSGQQIVGPPRKKSPNELVDDLFKGAKEHGAVAVERVTKSPGETSKPRPFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SRFYAGGSERSGQQIVGPPRKKSPNELVDDLFKGAKEHGAVAVERVTKSPGETSKPRPFA
50 60 70 80 90 100
160 170 180 190 200 210
pF1KE1 GGGYRLGAAPEEESAYVAGEKRQHSSQDVHVVLKLWKSGFSLDNGELRSYQDPSNAQFLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GGGYRLGAAPEEESAYVAGEKRQHSSQDVHVVLKLWKSGFSLDNGELRSYQDPSNAQFLE
110 120 130 140 150 160
220 230 240 250 260 270
pF1KE1 SIRRGEVPAELRRLAHGGQVNLDMEDHRDEDFVKPKGAFKAFTGEGQKLGSTAPQVLSTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SIRRGEVPAELRRLAHGGQVNLDMEDHRDEDFVKPKGAFKAFTGEGQKLGSTAPQVLSTS
170 180 190 200 210 220
280 290 300 310 320 330
pF1KE1 SPAQQAENEAKASSSILIDESEPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SPAQQAENEAKASSSILIDESEPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPA
230 240 250 260 270 280
340 350 360 370
pF1KE1 MAATSFILMTTFPNKELADESQTLKEANLLNAVIVQRLT
:::::::::::::::::::::::::::::::::::::::
XP_011 MAATSFILMTTFPNKELADESQTLKEANLLNAVIVQRLT
290 300 310 320
>>XP_011527606 (OMIM: 606610) PREDICTED: NSFL1 cofactor (319 aa)
initn: 1965 init1: 1965 opt: 1965 Z-score: 2028.5 bits: 383.8 E(85289): 3e-106
Smith-Waterman score: 1965; 100.0% identity (100.0% similar) in 302 aa overlap (69-370:18-319)
40 50 60 70 80 90
pF1KE1 ASFYEDGGDEDIVTISQATPSSVSRGTAPSDNRVTSFRDLIHDQDEDEEEEEGQRFYAGG
::::::::::::::::::::::::::::::
XP_011 MLVMAHLGITAWDMLLGDNRVTSFRDLIHDQDEDEEEEEGQRFYAGG
10 20 30 40
100 110 120 130 140 150
pF1KE1 SERSGQQIVGPPRKKSPNELVDDLFKGAKEHGAVAVERVTKSPGETSKPRPFAGGGYRLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SERSGQQIVGPPRKKSPNELVDDLFKGAKEHGAVAVERVTKSPGETSKPRPFAGGGYRLG
50 60 70 80 90 100
160 170 180 190 200 210
pF1KE1 AAPEEESAYVAGEKRQHSSQDVHVVLKLWKSGFSLDNGELRSYQDPSNAQFLESIRRGEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AAPEEESAYVAGEKRQHSSQDVHVVLKLWKSGFSLDNGELRSYQDPSNAQFLESIRRGEV
110 120 130 140 150 160
220 230 240 250 260 270
pF1KE1 PAELRRLAHGGQVNLDMEDHRDEDFVKPKGAFKAFTGEGQKLGSTAPQVLSTSSPAQQAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PAELRRLAHGGQVNLDMEDHRDEDFVKPKGAFKAFTGEGQKLGSTAPQVLSTSSPAQQAE
170 180 190 200 210 220
280 290 300 310 320 330
pF1KE1 NEAKASSSILIDESEPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NEAKASSSILIDESEPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFI
230 240 250 260 270 280
340 350 360 370
pF1KE1 LMTTFPNKELADESQTLKEANLLNAVIVQRLT
::::::::::::::::::::::::::::::::
XP_011 LMTTFPNKELADESQTLKEANLLNAVIVQRLT
290 300 310
>>XP_016883446 (OMIM: 606610) PREDICTED: NSFL1 cofactor (321 aa)
initn: 1844 init1: 1844 opt: 1951 Z-score: 2014.1 bits: 381.1 E(85289): 1.9e-105
Smith-Waterman score: 1951; 99.3% identity (99.3% similar) in 304 aa overlap (69-370:18-321)
40 50 60 70 80 90
pF1KE1 ASFYEDGGDEDIVTISQATPSSVSRGTAPSDNRVTSFRDLIHDQDEDEEEEEGQR--FYA
::::::::::::::::::::::::: :::
XP_016 MLVMAHLGITAWDMLLGDNRVTSFRDLIHDQDEDEEEEEGQRSRFYA
10 20 30 40
100 110 120 130 140 150
pF1KE1 GGSERSGQQIVGPPRKKSPNELVDDLFKGAKEHGAVAVERVTKSPGETSKPRPFAGGGYR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GGSERSGQQIVGPPRKKSPNELVDDLFKGAKEHGAVAVERVTKSPGETSKPRPFAGGGYR
50 60 70 80 90 100
160 170 180 190 200 210
pF1KE1 LGAAPEEESAYVAGEKRQHSSQDVHVVLKLWKSGFSLDNGELRSYQDPSNAQFLESIRRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LGAAPEEESAYVAGEKRQHSSQDVHVVLKLWKSGFSLDNGELRSYQDPSNAQFLESIRRG
110 120 130 140 150 160
220 230 240 250 260 270
pF1KE1 EVPAELRRLAHGGQVNLDMEDHRDEDFVKPKGAFKAFTGEGQKLGSTAPQVLSTSSPAQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EVPAELRRLAHGGQVNLDMEDHRDEDFVKPKGAFKAFTGEGQKLGSTAPQVLSTSSPAQQ
170 180 190 200 210 220
280 290 300 310 320 330
pF1KE1 AENEAKASSSILIDESEPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AENEAKASSSILIDESEPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATS
230 240 250 260 270 280
340 350 360 370
pF1KE1 FILMTTFPNKELADESQTLKEANLLNAVIVQRLT
::::::::::::::::::::::::::::::::::
XP_016 FILMTTFPNKELADESQTLKEANLLNAVIVQRLT
290 300 310 320
>>XP_011527607 (OMIM: 606610) PREDICTED: NSFL1 cofactor (279 aa)
initn: 1178 init1: 1178 opt: 1700 Z-score: 1756.9 bits: 333.3 E(85289): 4e-91
Smith-Waterman score: 1700; 98.1% identity (98.1% similar) in 266 aa overlap (1-261:1-266)
10 20 30 40 50 60
pF1KE1 MAAERQEALREFVAVTGAEEDRARFFLESAGWDLQIALASFYEDGGDEDIVTISQATPSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAAERQEALREFVAVTGAEEDRARFFLESAGWDLQIALASFYEDGGDEDIVTISQATPSS
10 20 30 40 50 60
70 80 90 100 110
pF1KE1 VSRGTAP---SDNRVTSFRDLIHDQDEDEEEEEGQR--FYAGGSERSGQQIVGPPRKKSP
::::::: :::::::::::::::::::::::::: ::::::::::::::::::::::
XP_011 VSRGTAPREKSDNRVTSFRDLIHDQDEDEEEEEGQRSRFYAGGSERSGQQIVGPPRKKSP
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE1 NELVDDLFKGAKEHGAVAVERVTKSPGETSKPRPFAGGGYRLGAAPEEESAYVAGEKRQH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NELVDDLFKGAKEHGAVAVERVTKSPGETSKPRPFAGGGYRLGAAPEEESAYVAGEKRQH
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE1 SSQDVHVVLKLWKSGFSLDNGELRSYQDPSNAQFLESIRRGEVPAELRRLAHGGQVNLDM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SSQDVHVVLKLWKSGFSLDNGELRSYQDPSNAQFLESIRRGEVPAELRRLAHGGQVNLDM
190 200 210 220 230 240
240 250 260 270 280 290
pF1KE1 EDHRDEDFVKPKGAFKAFTGEGQKLGSTAPQVLSTSSPAQQAENEAKASSSILIDESEPT
::::::::::::::::::::::::::
XP_011 EDHRDEDFVKPKGAFKAFTGEGQKLGRLSCFPPFKPLFS
250 260 270
>>XP_006723657 (OMIM: 606610) PREDICTED: NSFL1 cofactor (259 aa)
initn: 1587 init1: 1587 opt: 1587 Z-score: 1641.2 bits: 311.8 E(85289): 1.1e-84
Smith-Waterman score: 1587; 99.6% identity (100.0% similar) in 247 aa overlap (124-370:13-259)
100 110 120 130 140 150
pF1KE1 FYAGGSERSGQQIVGPPRKKSPNELVDDLFKGAKEHGAVAVERVTKSPGETSKPRPFAGG
.:::::::::::::::::::::::::::::
XP_006 MTKMKMRRKRKARGAKEHGAVAVERVTKSPGETSKPRPFAGG
10 20 30 40
160 170 180 190 200 210
pF1KE1 GYRLGAAPEEESAYVAGEKRQHSSQDVHVVLKLWKSGFSLDNGELRSYQDPSNAQFLESI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 GYRLGAAPEEESAYVAGEKRQHSSQDVHVVLKLWKSGFSLDNGELRSYQDPSNAQFLESI
50 60 70 80 90 100
220 230 240 250 260 270
pF1KE1 RRGEVPAELRRLAHGGQVNLDMEDHRDEDFVKPKGAFKAFTGEGQKLGSTAPQVLSTSSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 RRGEVPAELRRLAHGGQVNLDMEDHRDEDFVKPKGAFKAFTGEGQKLGSTAPQVLSTSSP
110 120 130 140 150 160
280 290 300 310 320 330
pF1KE1 AQQAENEAKASSSILIDESEPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 AQQAENEAKASSSILIDESEPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMA
170 180 190 200 210 220
340 350 360 370
pF1KE1 ATSFILMTTFPNKELADESQTLKEANLLNAVIVQRLT
:::::::::::::::::::::::::::::::::::::
XP_006 ATSFILMTTFPNKELADESQTLKEANLLNAVIVQRLT
230 240 250
370 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 23:24:39 2016 done: Sun Nov 6 23:24:40 2016
Total Scan time: 9.230 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]