FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1362, 312 aa
  1>>>pF1KE1362 312 - 312 aa - 312 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.1398+/-0.000754; mu= 5.0100+/- 0.046
 mean_var=173.4591+/-35.498, 0's: 0 Z-trim(115.7): 2  B-trim: 440 in 1/51
 Lambda= 0.097381
 statistics sampled from 16259 (16260) to 16259 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.808), E-opt: 0.2 (0.499), width:  16
 Scan time:  3.060

The best scores are:                                      opt bits E(32554)
CCDS10829.1 TRADD gene_id:8717|Hs108|chr16         ( 312) 2065 301.2 6.5e-82


>>CCDS10829.1 TRADD gene_id:8717|Hs108|chr16              (312 aa)
 initn: 2065 init1: 2065 opt: 2065  Z-score: 1584.0  bits: 301.2 E(32554): 6.5e-82
Smith-Waterman score: 2065; 100.0% identity (100.0% similar) in 312 aa overlap (1-312:1-312)

               10        20        30        40        50        60
pF1KE1 MAAGQNGHEEWVGSAYLFVESSLDKVVLSDAYAHPQQKVAVYRALQAALAESGGSPDVLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MAAGQNGHEEWVGSAYLFVESSLDKVVLSDAYAHPQQKVAVYRALQAALAESGGSPDVLQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 MLKIHRSDPQLIVQLRFCGRQPCGRFLRAYREGALRAALQRSLAAALAQHSVPLQLELRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MLKIHRSDPQLIVQLRFCGRQPCGRFLRAYREGALRAALQRSLAAALAQHSVPLQLELRA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 GAERLDALLADEERCLSCILAQQPDRLRDEELAELEDALRNLKCGSGARGGDGEVASAPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 GAERLDALLADEERCLSCILAQQPDRLRDEELAELEDALRNLKCGSGARGGDGEVASAPL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 QPPVPSLSEVKPPPPPPPAQTFLFQGQPVVNRPLSLKDQQTFARSVGLKWRKVGRSLQRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 QPPVPSLSEVKPPPPPPPAQTFLFQGQPVVNRPLSLKDQQTFARSVGLKWRKVGRSLQRG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 CRALRDPALDSLAYEYEREGLYEQAFQLLRRFVQAEGRRATLQRLVEALEENELTSLAED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 CRALRDPALDSLAYEYEREGLYEQAFQLLRRFVQAEGRRATLQRLVEALEENELTSLAED
              250       260       270       280       290       300

              310  
pF1KE1 LLGLTDPNGGLA
       ::::::::::::
CCDS10 LLGLTDPNGGLA
              310  




312 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 02:25:39 2016 done: Mon Nov  7 02:25:40 2016
 Total Scan time:  3.060 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]