FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1353, 207 aa
  1>>>pF1KE1353 207 - 207 aa - 207 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.1105+/-0.000829; mu= -0.9447+/- 0.050
 mean_var=238.8861+/-48.334, 0's: 0 Z-trim(116.8): 28  B-trim: 164 in 2/49
 Lambda= 0.082981
 statistics sampled from 17447 (17475) to 17447 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.828), E-opt: 0.2 (0.537), width:  16
 Scan time:  2.310

The best scores are:                                      opt bits E(32554)
CCDS8062.1 VEGFB gene_id:7423|Hs108|chr11          ( 207) 1435 183.2 9.9e-47
CCDS58144.1 VEGFB gene_id:7423|Hs108|chr11         ( 188)  970 127.5 5.2e-30


>>CCDS8062.1 VEGFB gene_id:7423|Hs108|chr11               (207 aa)
 initn: 1435 init1: 1435 opt: 1435  Z-score: 952.5  bits: 183.2 E(32554): 9.9e-47
Smith-Waterman score: 1435; 100.0% identity (100.0% similar) in 207 aa overlap (1-207:1-207)

               10        20        30        40        50        60
pF1KE1 MSPLLRRLLLAALLQLAPAQAPVSQPDAPGHQRKVVSWIDVYTRATCQPREVVVPLTVEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 MSPLLRRLLLAALLQLAPAQAPVSQPDAPGHQRKVVSWIDVYTRATCQPREVVVPLTVEL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 MGTVAKQLVPSCVTVQRCGGCCPDDGLECVPTGQHQVRMQILMIRYPSSQLGEMSLEEHS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 MGTVAKQLVPSCVTVQRCGGCCPDDGLECVPTGQHQVRMQILMIRYPSSQLGEMSLEEHS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 QCECRPKKKDSAVKPDRAATPHHRPQPRSVPGWDSAPGAPSPADITHPTPAPGPSAHAAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 QCECRPKKKDSAVKPDRAATPHHRPQPRSVPGWDSAPGAPSPADITHPTPAPGPSAHAAP
              130       140       150       160       170       180

              190       200       
pF1KE1 STTSALTPGPAAAAADAAASSVAKGGA
       :::::::::::::::::::::::::::
CCDS80 STTSALTPGPAAAAADAAASSVAKGGA
              190       200       

>>CCDS58144.1 VEGFB gene_id:7423|Hs108|chr11              (188 aa)
 initn: 966 init1: 944 opt: 970  Z-score: 652.2  bits: 127.5 E(32554): 5.2e-30
Smith-Waterman score: 970; 91.7% identity (93.6% similar) in 156 aa overlap (1-149:1-156)

               10        20        30        40        50        60
pF1KE1 MSPLLRRLLLAALLQLAPAQAPVSQPDAPGHQRKVVSWIDVYTRATCQPREVVVPLTVEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MSPLLRRLLLAALLQLAPAQAPVSQPDAPGHQRKVVSWIDVYTRATCQPREVVVPLTVEL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 MGTVAKQLVPSCVTVQRCGGCCPDDGLECVPTGQHQVRMQILMIRYPSSQLGEMSLEEHS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MGTVAKQLVPSCVTVQRCGGCCPDDGLECVPTGQHQVRMQILMIRYPSSQLGEMSLEEHS
               70        80        90       100       110       120

              130         140            150       160       170   
pF1KE1 QCECRPKKKDSAVKPD--RAATP-----HHRPQPRSVPGWDSAPGAPSPADITHPTPAPG
       ::::::::::::::::  :   :     :.::.::.                        
CCDS58 QCECRPKKKDSAVKPDSPRPLCPRCTQHHQRPDPRTCRCRCRRRSFLRCQGRGLELNPDT
              130       140       150       160       170       180

           180       190       200       
pF1KE1 PSAHAAPSTTSALTPGPAAAAADAAASSVAKGGA
                                         
CCDS58 CRCRKLRR                          
                                         




207 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 23:09:15 2016 done: Sun Nov  6 23:09:15 2016
 Total Scan time:  2.310 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]