FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1347, 379 aa
  1>>>pF1KE1347 379 - 379 aa - 379 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.8787+/-0.00086; mu= 10.1983+/- 0.052
 mean_var=107.2754+/-21.526, 0's: 0 Z-trim(110.2): 23  B-trim: 209 in 1/50
 Lambda= 0.123830
 statistics sampled from 11418 (11428) to 11418 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.715), E-opt: 0.2 (0.351), width:  16
 Scan time:  3.270

The best scores are:                                      opt bits E(32554)
CCDS5297.1 FGFR1OP gene_id:11116|Hs108|chr6        ( 379) 2381 435.7 3.2e-122
CCDS5296.1 FGFR1OP gene_id:11116|Hs108|chr6        ( 399) 1343 250.3 2.2e-66
CCDS75550.1 FGFR1OP gene_id:11116|Hs108|chr6       ( 351) 1170 219.4   4e-57


>>CCDS5297.1 FGFR1OP gene_id:11116|Hs108|chr6             (379 aa)
 initn: 2381 init1: 2381 opt: 2381  Z-score: 2307.7  bits: 435.7 E(32554): 3.2e-122
Smith-Waterman score: 2381; 99.5% identity (100.0% similar) in 379 aa overlap (1-379:1-379)

               10        20        30        40        50        60
pF1KE1 MAATAAAVVAEEDTELRDLLVQTLENSGVLNRIKAELRAAVFLALEEQEKVENKTPLVNE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 MAATAAAVVAEEDTELRDLLVQTLENSGVLNRIKAELRAAVFLALEEQEKVENKTPLVNE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 SLRKFLNTKDGRLVASLVAEFLQFFNLDFTLAVFQPETSTLQGLEGRENLARDLGIIEAE
       ::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 SLKKFLNTKDGRLVASLVAEFLQFFNLDFTLAVFQPETSTLQGLEGRENLARDLGIIEAE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 GTVGGPLLLEVIRRCQQKEKGPTTGEGALDLSDVHSPPKSPEGKTSAQTTPSKKANDEAN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 GTVGGPLLLEVIRRCQQKEKGPTTGEGALDLSDVHSPPKSPEGKTSAQTTPSKKANDEAN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 QSDTSVSLSEPKSKSSLHLLSHETKIGSFLSNRTLDGKDKAGLCPDEDDMEGDSFFDDPI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 QSDTSVSLSEPKSKSSLHLLSHETKIGSFLSNRTLDGKDKAGLCPDEDDMEGDSFFDDPI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 PKPEKTYGLRNEPRKQAGSLASLSDAPPLKSGLSSLAGAPSLKDSESKRGNTVLKDLKLI
       ::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 PKPEKTYGLRKEPRKQAGSLASLSDAPPLKSGLSSLAGAPSLKDSESKRGNTVLKDLKLI
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 SDKIGSLGLGTGEDDDYVDDFNSTSHRSEKSEISIGEEIEEDLSVEIDDINTSDKLDDLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 SDKIGSLGLGTGEDDDYVDDFNSTSHRSEKSEISIGEEIEEDLSVEIDDINTSDKLDDLT
              310       320       330       340       350       360

              370         
pF1KE1 QDLTVSQLSDVADYLEDVA
       :::::::::::::::::::
CCDS52 QDLTVSQLSDVADYLEDVA
              370         

>>CCDS5296.1 FGFR1OP gene_id:11116|Hs108|chr6             (399 aa)
 initn: 1335 init1: 1335 opt: 1343  Z-score: 1305.2  bits: 250.3 E(32554): 2.2e-66
Smith-Waterman score: 2331; 94.5% identity (95.0% similar) in 399 aa overlap (1-379:1-399)

               10        20        30        40        50        60
pF1KE1 MAATAAAVVAEEDTELRDLLVQTLENSGVLNRIKAELRAAVFLALEEQEKVENKTPLVNE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 MAATAAAVVAEEDTELRDLLVQTLENSGVLNRIKAELRAAVFLALEEQEKVENKTPLVNE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 SLRKFLNTKDGRLVASLVAEFLQFFNLDFTLAVFQPETSTLQGLEGRENLARDLGIIEAE
       ::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 SLKKFLNTKDGRLVASLVAEFLQFFNLDFTLAVFQPETSTLQGLEGRENLARDLGIIEAE
               70        80        90       100       110       120

              130       140       150       160       170          
pF1KE1 GTVGGPLLLEVIRRCQQKEKGPTTGEGALDLSDVHSPPKSPEGKTSAQTTPSK-------
       :::::::::::::::::::::::::::::::::::::::::::::::::::::       
CCDS52 GTVGGPLLLEVIRRCQQKEKGPTTGEGALDLSDVHSPPKSPEGKTSAQTTPSKIPRYKGQ
              130       140       150       160       170       180

                        180       190       200       210       220
pF1KE1 -------------KANDEANQSDTSVSLSEPKSKSSLHLLSHETKIGSFLSNRTLDGKDK
                    :::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 GKKKTSGQKAGDKKANDEANQSDTSVSLSEPKSKSSLHLLSHETKIGSFLSNRTLDGKDK
              190       200       210       220       230       240

              230       240       250       260       270       280
pF1KE1 AGLCPDEDDMEGDSFFDDPIPKPEKTYGLRNEPRKQAGSLASLSDAPPLKSGLSSLAGAP
       ::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::
CCDS52 AGLCPDEDDMEGDSFFDDPIPKPEKTYGLRKEPRKQAGSLASLSDAPPLKSGLSSLAGAP
              250       260       270       280       290       300

              290       300       310       320       330       340
pF1KE1 SLKDSESKRGNTVLKDLKLISDKIGSLGLGTGEDDDYVDDFNSTSHRSEKSEISIGEEIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 SLKDSESKRGNTVLKDLKLISDKIGSLGLGTGEDDDYVDDFNSTSHRSEKSEISIGEEIE
              310       320       330       340       350       360

              350       360       370         
pF1KE1 EDLSVEIDDINTSDKLDDLTQDLTVSQLSDVADYLEDVA
       :::::::::::::::::::::::::::::::::::::::
CCDS52 EDLSVEIDDINTSDKLDDLTQDLTVSQLSDVADYLEDVA
              370       380       390         

>>CCDS75550.1 FGFR1OP gene_id:11116|Hs108|chr6            (351 aa)
 initn: 1168 init1: 1168 opt: 1170  Z-score: 1139.0  bits: 219.4 E(32554): 4e-57
Smith-Waterman score: 1995; 88.0% identity (90.7% similar) in 376 aa overlap (1-373:1-349)

               10        20        30        40        50        60
pF1KE1 MAATAAAVVAEEDTELRDLLVQTLENSGVLNRIKAELRAAVFLALEEQEKVENKTPLVNE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 MAATAAAVVAEEDTELRDLLVQTLENSGVLNRIKAELRAAVFLALEEQEKVENKTPLVNE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 SLRKFLNTKDGRLVASLVAEFLQFFNLDFTLAVFQPETSTLQGLEGRENLARDLGIIEAE
       ::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 SLKKFLNTKDGRLVASLVAEFLQFFNLDFTLAVFQPETSTLQGLEGRENLARDLGIIEAE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 GTVGGPLLLEVIRRCQQKEKGPTTGEGALDLSDVHSPPKSPEGKTSAQTTPSKKANDEAN
       ::::::::::::::::::::::::::                           :::::::
CCDS75 GTVGGPLLLEVIRRCQQKEKGPTTGE---------------------------KANDEAN
              130       140                                  150   

              190       200       210       220       230       240
pF1KE1 QSDTSVSLSEPKSKSSLHLLSHETKIGSFLSNRTLDGKDKAGLCPDEDDMEGDSFFDDPI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 QSDTSVSLSEPKSKSSLHLLSHETKIGSFLSNRTLDGKDKAGLCPDEDDMEGDSFFDDPI
           160       170       180       190       200       210   

              250       260       270       280       290       300
pF1KE1 PKPEKTYGLRNEPRKQAGSLASLSDAPPLKSGLSSLAGAPSLKDSESKRGNTVLKDLKLI
       ::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 PKPEKTYGLRKEPRKQAGSLASLSDAPPLKSGLSSLAGAPSLKDSESKRGNTVLKDLKLI
           220       230       240       250       260       270   

              310       320       330       340       350          
pF1KE1 SDKIGSLGLGTGEDDDYVDDFNSTSHRSEKSEISIGEEIEEDLSVEIDDINTSDK-LDDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::: . .:
CCDS75 SDKIGSLGLGTGEDDDYVDDFNSTSHRSEKSEISIGEEIEEDLSVEIDDINTSDKTITQL
           280       290       300       310       320       330   

     360         370         
pF1KE1 TQDLTVSQL--SDVADYLEDVA
          :... :  ...::      
CCDS75 ECLLSIGALHFKNTADIF    
           340       350     




379 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 01:46:56 2016 done: Mon Nov  7 01:46:57 2016
 Total Scan time:  3.270 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]