Result of FASTA (omim) for
pFN21AE1343
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1343, 261 aa
1>>>pF1KE1343 261 - 261 aa - 261 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1082+/-0.000332; mu= 16.4982+/- 0.021
mean_var=77.5751+/-15.812, 0's: 0 Z-trim(115.3): 53 B-trim: 0 in 0/57
Lambda= 0.145617
statistics sampled from 25666 (25729) to 25666 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.676), E-opt: 0.2 (0.302), width: 16
Scan time: 6.600
The best scores are: opt bits E(85289)
NP_006111 (OMIM: 142855) HLA class II histocompati ( 261) 1844 396.6 2.4e-110
NP_064440 (OMIM: 613503) HLA class II histocompati ( 255) 371 87.1 3.4e-17
NP_002110 (OMIM: 142930) HLA class II histocompati ( 250) 363 85.4 1.1e-16
NP_002113 (OMIM: 146880,212750) HLA class II histo ( 255) 360 84.8 1.7e-16
NP_291032 (OMIM: 142880) HLA class II histocompati ( 260) 348 82.3 9.8e-16
NP_001229454 (OMIM: 142880) HLA class II histocomp ( 260) 348 82.3 9.8e-16
NP_001229453 (OMIM: 142880) HLA class II histocomp ( 260) 348 82.3 9.8e-16
NP_061984 (OMIM: 142860) HLA class II histocompati ( 254) 339 80.4 3.6e-15
XP_006715142 (OMIM: 146880,212750) PREDICTED: HLA ( 206) 270 65.8 7.1e-11
XP_011507765 (OMIM: 600764) PREDICTED: major histo ( 254) 174 45.7 9.7e-05
NP_620573 (OMIM: 104300,176100,176200,235200,61263 ( 256) 170 44.9 0.00018
NP_001522 (OMIM: 600764) major histocompatibility ( 341) 168 44.6 0.00029
XP_011546040 (OMIM: 126200,142857,180300,181000) P ( 266) 162 43.2 0.00058
NP_001185787 (OMIM: 615161) HLA class II histocomp ( 227) 157 42.1 0.0011
NP_001230891 (OMIM: 123400,126200,212750,604305) H ( 261) 157 42.2 0.0012
NP_004039 (OMIM: 105200,109700,241600) beta-2-micr ( 119) 151 40.6 0.0016
XP_005254606 (OMIM: 105200,109700,241600) PREDICTE ( 122) 151 40.6 0.0016
NP_072049 (OMIM: 612735) major histocompatibility ( 266) 153 41.3 0.0021
XP_011512862 (OMIM: 615161) PREDICTED: HLA class I ( 256) 150 40.7 0.0032
NP_001287719 (OMIM: 615161) HLA class II histocomp ( 264) 150 40.7 0.0033
NP_001230894 (OMIM: 126200,142857,180300,181000) m ( 266) 150 40.7 0.0033
XP_005249108 (OMIM: 615161) PREDICTED: HLA class I ( 275) 150 40.7 0.0034
NP_002112 (OMIM: 142858) HLA class II histocompati ( 258) 148 40.3 0.0043
NP_002111 (OMIM: 600629) HLA class II histocompati ( 273) 148 40.3 0.0045
NP_002115 (OMIM: 126200,142857,180300,181000) majo ( 266) 145 39.6 0.0069
NP_002114 (OMIM: 123400,126200,212750,604305) HLA ( 261) 144 39.4 0.0078
NP_001230890 (OMIM: 123400,126200,212750,604305) H ( 269) 144 39.4 0.008
>>NP_006111 (OMIM: 142855) HLA class II histocompatibili (261 aa)
initn: 1844 init1: 1844 opt: 1844 Z-score: 2102.0 bits: 396.6 E(85289): 2.4e-110
Smith-Waterman score: 1844; 100.0% identity (100.0% similar) in 261 aa overlap (1-261:1-261)
10 20 30 40 50 60
pF1KE1 MGHEQNQGAALLQMLPLLWLLPHSWAVPEAPTPMWPDDLQNHTFLHTVYCQDGSPSVGLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MGHEQNQGAALLQMLPLLWLLPHSWAVPEAPTPMWPDDLQNHTFLHTVYCQDGSPSVGLS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 EAYDEDQLFFFDFSQNTRVPRLPEFADWAQEQGDAPAILFDKEFCEWMIQQIGPKLDGKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 EAYDEDQLFFFDFSQNTRVPRLPEFADWAQEQGDAPAILFDKEFCEWMIQQIGPKLDGKI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 PVSRGFPIAEVFTLKPLEFGKPNTLVCFVSNLFPPMLTVNWQHHSVPVEGFGPTFVSAVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 PVSRGFPIAEVFTLKPLEFGKPNTLVCFVSNLFPPMLTVNWQHHSVPVEGFGPTFVSAVD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 GLSFQAFSYLNFTPEPSDIFSCIVTHEIDRYTAIAYWVPRNALPSDLLENVLCGVAFGLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 GLSFQAFSYLNFTPEPSDIFSCIVTHEIDRYTAIAYWVPRNALPSDLLENVLCGVAFGLG
190 200 210 220 230 240
250 260
pF1KE1 VLGIIVGIVLIIYFRKPCSGD
:::::::::::::::::::::
NP_006 VLGIIVGIVLIIYFRKPCSGD
250 260
>>NP_064440 (OMIM: 613503) HLA class II histocompatibili (255 aa)
initn: 281 init1: 137 opt: 371 Z-score: 429.7 bits: 87.1 E(85289): 3.4e-17
Smith-Waterman score: 371; 30.7% identity (61.8% similar) in 241 aa overlap (20-252:7-240)
10 20 30 40 50
pF1KE1 MGHEQNQGAALLQMLPLLWLLPHSWAVPEAPTPMWPDDL-QNHTFLHTV-YCQDGSPSVG
:: . :. . .: .:. .:. . : . :. .::
NP_064 MILNKALLLGALALTAVMSPCGGEDIVADHVASYGVNFYQSHGPSGQ
10 20 30 40
60 70 80 90 100 110
pF1KE1 LSEAYDEDQLFFFDFSQNTRVPRLPEFADWAQ--EQGDAPAILFDKEFCEWMIQQIGPKL
.. .: :. :. :. . : .:: :. . . :. . :. :.:..:
NP_064 YTHEFDGDEEFYVDLETKETVWQLPMFSKFISFDPQSALRNMAVGKHTLEFMMRQ-----
50 60 70 80 90 100
120 130 140 150 160 170
pF1KE1 DGKIPVSRGFPIAEVFTLKPLEFGKPNTLVCFVSNLFPPMLTVNW--QHHSVPVEGFGPT
... .. : . ::. :. .:.::::.:.:.:.:::.....: . ::: .:: . :
NP_064 SNSTAATNEVPEVTVFSKFPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSV-TEGVSET
110 120 130 140 150 160
180 190 200 210 220 230
pF1KE1 -FVSAVDGLSFQAFSYLNFTPEPSDIFSCIVTHEIDRYTAIAYWVPRNALP-SDLLENVL
:.: : :: .:::.: : ..:..: : : . .: :. : :.: :...
NP_064 SFLSKSDH-SFFKISYLTFLPSADEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETLV
170 180 190 200 210 220
240 250 260
pF1KE1 CGVAFGLGVLGIIVGIVLIIYFRKPCSGD
:......:..::.:: :.::
NP_064 CALGLSVGLMGIVVGTVFIIQGLRSVGASRHQGLL
230 240 250
>>NP_002110 (OMIM: 142930) HLA class II histocompatibili (250 aa)
initn: 262 init1: 102 opt: 363 Z-score: 420.7 bits: 85.4 E(85289): 1.1e-16
Smith-Waterman score: 363; 32.2% identity (63.0% similar) in 211 aa overlap (49-252:38-240)
20 30 40 50 60 70
pF1KE1 WLLPHSWAVPEAPTPMWPDDLQNHTFLHTVYCQDGSPSVGLSEAYDEDQLFFFDFSQNTR
. :. . : ... .::.::: :....
NP_002 VLGFHTLMTLLSPQEAGATKADHMGSYGPAFYQSYGASGQFTHEFDEEQLFSVDLKKSEA
10 20 30 40 50 60
80 90 100 110 120 130
pF1KE1 VPRLPEFADWAQ--EQGDAPAILFDKEFCEWMIQQIGPKLDGKIPVSRGFPIAEVFTLKP
: :::::.:.:. :: .: : . .... . . ..: : . :. .
NP_002 VWRLPEFGDFARFDPQGGLAGIAAIKAHLDILVERSNRSRAINVP-----PRVTVLPKSR
70 80 90 100 110 120
140 150 160 170 180 190
pF1KE1 LEFGKPNTLVCFVSNLFPPMLTVNWQHHSVPV-EGFGPT-FVSAVDGLSFQAFSYLNFTP
.:.:.:: :.:.:.:.:::.....: ... : :: . : : : : : :. : :: :.:
NP_002 VELGQPNILICIVDNIFPPVINITWLRNGQTVTEGVAQTSFYSQPDHL-FRKFHYLPFVP
130 140 150 160 170 180
200 210 220 230 240 250
pF1KE1 EPSDIFSCIVTHEIDRYTAIAYW---VPRNALPSDLLENVLCGVAFGLGVLGIIVGIVLI
:...: : : . .: :: : : .:...:......:..:..:: :::
NP_002 SAEDVYDCQVEHWGLDAPLLRHWELQVP--IPPPDAMETLVCALGLAIGLVGFLVGTVLI
190 200 210 220 230
260
pF1KE1 IYFRKPCSGD
:
NP_002 IMGTYVSSVPR
240 250
>>NP_002113 (OMIM: 146880,212750) HLA class II histocomp (255 aa)
initn: 345 init1: 141 opt: 360 Z-score: 417.2 bits: 84.8 E(85289): 1.7e-16
Smith-Waterman score: 360; 32.0% identity (63.1% similar) in 203 aa overlap (55-252:44-240)
30 40 50 60 70 80
pF1KE1 WAVPEAPTPMWPDDLQNHTFLHTVYCQDGSPSVGLSEAYDEDQLFFFDFSQNTRVPRLPE
:: .. .: :. :. :. .. . : ::
NP_002 LTTVMSPCGGEDIVADHVASCGVNLYQFYGPSGQYTHEFDGDEQFYVDLERKETAWRWPE
20 30 40 50 60 70
90 100 110 120 130 140
pF1KE1 FADWA--QEQGDAPAILFDKEFCEWMIQQIGPKLDGKIPVSRGFPIAEVFTLKPLEFGKP
:. .. . :: . :. . ::.. . . .. : . ::. .:. .:.:
NP_002 FSKFGGFDPQGALRNMAVAKHNLNIMIKRYN-----STAATNEVPEVTVFSKSPVTLGQP
80 90 100 110 120
150 160 170 180 190 200
pF1KE1 NTLVCFVSNLFPPMLTVNWQHHSVPV-EGFGPT-FVSAVDGLSFQAFSYLNFTPEPSDIF
:::.:.:.:.:::.....: .. : :: . : :.: : :: .:::.: : ..:.
NP_002 NTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDH-SFFKISYLTFLPSADEIY
130 140 150 160 170 180
210 220 230 240 250
pF1KE1 SCIVTHEIDRYTAIAYWVPRNALP-SDLLENVLCGVAFGLGVLGIIVGIVLIIYFRKPCS
.: : : . .: :. : :.: :.:.:......:..::.:: :.::
NP_002 DCKVEHWGLDQPLLKHWEPEIPAPMSELTETVVCALGLSVGLMGIVVGTVFIIQGLRSVG
190 200 210 220 230 240
260
pF1KE1 GD
NP_002 ASRHQGPL
250
>>NP_291032 (OMIM: 142880) HLA class II histocompatibili (260 aa)
initn: 347 init1: 140 opt: 348 Z-score: 403.5 bits: 82.3 E(85289): 9.8e-16
Smith-Waterman score: 348; 29.6% identity (61.1% similar) in 216 aa overlap (41-252:35-245)
20 30 40 50 60 70
pF1KE1 LLQMLPLLWLLPHSWAVPEAPTPMWPDDLQNHTFLHTVYCQDGSPSVGLSEAYDEDQLFF
.:. .... : :. . .:::..:.
NP_291 DRMFHIRAVILRALSLAFLLSLRGAGAIKADHVSTYAAFVQTHRPTGEFMFEFDEDEMFY
10 20 30 40 50 60
80 90 100 110 120
pF1KE1 FDFSQNTRVPRLPEFADWA--QEQGDAPAILFDKEFCEWMIQQIGPKLDGKIPVSRGFPI
:.... : .: ::.. . :: : . .. . .::. ... .. :
NP_291 VDLDKKETVWHLEEFGQAFSFEAQGGLANIAILNNNLNTLIQR-----SNHTQATNDPPE
70 80 90 100 110
130 140 150 160 170 180
pF1KE1 AEVFTLKPLEFGKPNTLVCFVSNLFPPMLTVNWQHHSVPV-EGFGPTFVSAVDGLSFQAF
. :: .:.:.:.::::.: ....:::.:.:.: .. : :: . .. ::. :
NP_291 VTVFPKEPVELGQPNTLICHIDKFFPPVLNVTWLCNGELVTEGVAESLFLPRTDYSFHKF
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE1 SYLNFTPEPSDIFSCIVTHEIDRYTAIAYWVPRNALP-SDLLENVLCGVAFGLGVLGIIV
::.:.: :...: : : . .: .. . . :.:::.... ::..::::
NP_291 HYLTFVPSAEDFYDCRVEHWGLDQPLLKHWEAQEPIQMPETTETVLCALGLVLGLVGIIV
180 190 200 210 220 230
250 260
pF1KE1 GIVLIIYFRKPCSGD
: ::::
NP_291 GTVLIIKSLRSGHDPRAQGTL
240 250 260
>>NP_001229454 (OMIM: 142880) HLA class II histocompatib (260 aa)
initn: 347 init1: 140 opt: 348 Z-score: 403.5 bits: 82.3 E(85289): 9.8e-16
Smith-Waterman score: 348; 29.6% identity (61.1% similar) in 216 aa overlap (41-252:35-245)
20 30 40 50 60 70
pF1KE1 LLQMLPLLWLLPHSWAVPEAPTPMWPDDLQNHTFLHTVYCQDGSPSVGLSEAYDEDQLFF
.:. .... : :. . .:::..:.
NP_001 DRMFHIRAVILRALSLAFLLSLRGAGAIKADHVSTYAAFVQTHRPTGEFMFEFDEDEMFY
10 20 30 40 50 60
80 90 100 110 120
pF1KE1 FDFSQNTRVPRLPEFADWA--QEQGDAPAILFDKEFCEWMIQQIGPKLDGKIPVSRGFPI
:.... : .: ::.. . :: : . .. . .::. ... .. :
NP_001 VDLDKKETVWHLEEFGQAFSFEAQGGLANIAILNNNLNTLIQR-----SNHTQATNDPPE
70 80 90 100 110
130 140 150 160 170 180
pF1KE1 AEVFTLKPLEFGKPNTLVCFVSNLFPPMLTVNWQHHSVPV-EGFGPTFVSAVDGLSFQAF
. :: .:.:.:.::::.: ....:::.:.:.: .. : :: . .. ::. :
NP_001 VTVFPKEPVELGQPNTLICHIDKFFPPVLNVTWLCNGELVTEGVAESLFLPRTDYSFHKF
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE1 SYLNFTPEPSDIFSCIVTHEIDRYTAIAYWVPRNALP-SDLLENVLCGVAFGLGVLGIIV
::.:.: :...: : : . .: .. . . :.:::.... ::..::::
NP_001 HYLTFVPSAEDFYDCRVEHWGLDQPLLKHWEAQEPIQMPETTETVLCALGLVLGLVGIIV
180 190 200 210 220 230
250 260
pF1KE1 GIVLIIYFRKPCSGD
: ::::
NP_001 GTVLIIKSLRSGHDPRAQGTL
240 250 260
>>NP_001229453 (OMIM: 142880) HLA class II histocompatib (260 aa)
initn: 347 init1: 140 opt: 348 Z-score: 403.5 bits: 82.3 E(85289): 9.8e-16
Smith-Waterman score: 348; 29.6% identity (61.1% similar) in 216 aa overlap (41-252:35-245)
20 30 40 50 60 70
pF1KE1 LLQMLPLLWLLPHSWAVPEAPTPMWPDDLQNHTFLHTVYCQDGSPSVGLSEAYDEDQLFF
.:. .... : :. . .:::..:.
NP_001 DRMFHIRAVILRALSLAFLLSLRGAGAIKADHVSTYAAFVQTHRPTGEFMFEFDEDEMFY
10 20 30 40 50 60
80 90 100 110 120
pF1KE1 FDFSQNTRVPRLPEFADWA--QEQGDAPAILFDKEFCEWMIQQIGPKLDGKIPVSRGFPI
:.... : .: ::.. . :: : . .. . .::. ... .. :
NP_001 VDLDKKETVWHLEEFGQAFSFEAQGGLANIAILNNNLNTLIQR-----SNHTQATNDPPE
70 80 90 100 110
130 140 150 160 170 180
pF1KE1 AEVFTLKPLEFGKPNTLVCFVSNLFPPMLTVNWQHHSVPV-EGFGPTFVSAVDGLSFQAF
. :: .:.:.:.::::.: ....:::.:.:.: .. : :: . .. ::. :
NP_001 VTVFPKEPVELGQPNTLICHIDKFFPPVLNVTWLCNGELVTEGVAESLFLPRTDYSFHKF
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE1 SYLNFTPEPSDIFSCIVTHEIDRYTAIAYWVPRNALP-SDLLENVLCGVAFGLGVLGIIV
::.:.: :...: : : . .: .. . . :.:::.... ::..::::
NP_001 HYLTFVPSAEDFYDCRVEHWGLDQPLLKHWEAQEPIQMPETTETVLCALGLVLGLVGIIV
180 190 200 210 220 230
250 260
pF1KE1 GIVLIIYFRKPCSGD
: ::::
NP_001 GTVLIIKSLRSGHDPRAQGTL
240 250 260
>>NP_061984 (OMIM: 142860) HLA class II histocompatibili (254 aa)
initn: 199 init1: 126 opt: 339 Z-score: 393.4 bits: 80.4 E(85289): 3.6e-15
Smith-Waterman score: 341; 28.9% identity (58.1% similar) in 246 aa overlap (14-252:13-239)
10 20 30 40 50 60
pF1KE1 MGHEQNQGAALLQMLPLLWLLPHSWAVPEAPTPMWPDDLQNHTFLHTVYCQDGSPSVGLS
.. .: .:::. : .:..... . . . : .
NP_061 MAISGVPVLGFFIIAVLMSAQESWAIKE-----------EHVIIQAEFYLNPDQSGEFM
10 20 30 40
70 80 90 100 110
pF1KE1 EAYDEDQLFFFDFSQNTRVPRLPEFADWA--QEQGDAPAILFDKEFCEWMIQQIGPKLDG
.: :..: :.... : :: ::. .: . :: : :: : : .. ..
NP_061 FDFDGDEIFHVDMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKR-----SN
50 60 70 80 90 100
120 130 140 150 160 170
pF1KE1 KIPVSRGFPIAEVFTLKPLEFGKPNTLVCFVSNLFPPMLTVNWQHHSVPVE-GFGPT-FV
:.. : . :.: .:.:. .::.:.::.... ::...:.: ... :: : . : :.
NP_061 YTPITNVPPEVTVLTNSPVELREPNVLICFIDKFTPPVVNVTWLRNGKPVTTGVSETVFL
110 120 130 140 150 160
180 190 200 210 220 230
pF1KE1 SAVDGLSFQAFSYLNFTPEPSDIFSCIVTHEIDRYTAIAYW---VPRNALPSDLLENVLC
: : :. : :: : : :...: : : . .: .: . :: . :::.:
NP_061 PREDHL-FRKFHYLPFLPSTEDVYDCRVEHWGLDEPLLKHWEFDAP-SPLP-ETTENVVC
170 180 190 200 210 220
240 250 260
pF1KE1 GVAFGLGVLGIIVGIVLIIYFRKPCSGD
.... .:..:::.: ..::
NP_061 ALGLTVGLVGIIIGTIFIIKGLRKSNAAERRGPL
230 240 250
>>XP_006715142 (OMIM: 146880,212750) PREDICTED: HLA clas (206 aa)
initn: 269 init1: 141 opt: 270 Z-score: 316.3 bits: 65.8 E(85289): 7.1e-11
Smith-Waterman score: 270; 30.4% identity (59.5% similar) in 168 aa overlap (55-218:44-205)
30 40 50 60 70 80
pF1KE1 WAVPEAPTPMWPDDLQNHTFLHTVYCQDGSPSVGLSEAYDEDQLFFFDFSQNTRVPRLPE
:: .. .: :. :. :. .. . : ::
XP_006 LTTVMSPCGGEDIVADHVASCGVNLYQFYGPSGQYTHEFDGDEQFYVDLERKETAWRWPE
20 30 40 50 60 70
90 100 110 120 130 140
pF1KE1 FADWA--QEQGDAPAILFDKEFCEWMIQQIGPKLDGKIPVSRGFPIAEVFTLKPLEFGKP
:. .. . :: . :. . ::.. . . .. : . ::. .:. .:.:
XP_006 FSKFGGFDPQGALRNMAVAKHNLNIMIKRYN-----STAATNEVPEVTVFSKSPVTLGQP
80 90 100 110 120
150 160 170 180 190 200
pF1KE1 NTLVCFVSNLFPPMLTVNWQHHSVPV-EGFGPT-FVSAVDGLSFQAFSYLNFTPEPSDIF
:::.:.:.:.:::.....: .. : :: . : :.: : :: .:::.: : ..:.
XP_006 NTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDH-SFFKISYLTFLPSADEIY
130 140 150 160 170 180
210 220 230 240 250 260
pF1KE1 SCIVTHEIDRYTAIAYWVPRNALPSDLLENVLCGVAFGLGVLGIIVGIVLIIYFRKPCSG
.: : : . .::
XP_006 DCKVEHWGLDQPLLKHWVE
190 200
>>XP_011507765 (OMIM: 600764) PREDICTED: major histocomp (254 aa)
initn: 138 init1: 66 opt: 174 Z-score: 206.1 bits: 45.7 E(85289): 9.7e-05
Smith-Waterman score: 174; 22.6% identity (57.4% similar) in 230 aa overlap (38-257:21-240)
10 20 30 40 50 60
pF1KE1 GAALLQMLPLLWLLPHSWAVPEAPTPMWPDDLQNHTFLHTVYCQ---DGSPSVGLSEAYD
: ..::. . . :. ::: . :. :::
XP_011 MGELMAFLLPLIIVLMVKHSDSRSHTYQRMIGCELLEDGSTTGFLQYAYD
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 EDQLFFF--DFSQNTRVPRLPEFADWAQEQGDAPAILFDKEFCEWM-IQQIGPKLD-GKI
.....: : . : . . : : .. .:..:.. : : . :. ::
XP_011 GQDFLIFNKDTLSWLAVDNVAHTIKQAWE-ANQHELLYQKNWLEEECIAWLKRFLEYGKD
60 70 80 90 100
130 140 150 160 170
pF1KE1 PVSRGFPIAEVFTLKPLEFGKPNTLVCFVSNLFPPMLTVNWQHHSVPVE---GFGPTFVS
..: : : . . : ..: : . ...:: . ..:.... . .: . :
XP_011 TLQRTEP-PLVRVNRKETFPGVTALFCKAHGFYPPEIYMTWMKNGEEIVQEIDYGDILPS
110 120 130 140 150 160
180 190 200 210 220 230
pF1KE1 AVDGLSFQAFSYLNFTPEPSDIFSCIVTHEIDRYTAIAYWVPRNALPSDLLENVLCGVAF
. :: ..::.. ... :. :...:: : : . .. ::.. :. . :. .:.
XP_011 G-DG-TYQAWASIELDPQSSNLYSCHVEHC---GVHMVLQVPQE---SETIPLVMKAVSG
170 180 190 200 210 220
240 250 260
pF1KE1 GLGVLGIIVGIVLIIYFRKPCSGD
.. .. ...:. .... :.:
XP_011 SIVLVIVLAGVGVLVWRRRPREQNGAIYLPTPDR
230 240 250
261 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 01:50:43 2016 done: Mon Nov 7 01:50:44 2016
Total Scan time: 6.600 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]