Result of FASTA (omim) for
pFN21AE1332
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1332, 223 aa
1>>>pF1KE1332 223 - 223 aa - 223 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.9113+/-0.000361; mu= 15.9725+/- 0.022
mean_var=64.7411+/-12.908, 0's: 0 Z-trim(114.0): 50 B-trim: 0 in 0/53
Lambda= 0.159398
statistics sampled from 23500 (23550) to 23500 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.668), E-opt: 0.2 (0.276), width: 16
Scan time: 6.260
The best scores are: opt bits E(85289)
NP_004172 (OMIM: 191342,613643,615491) ubiquitin c ( 223) 1485 350.0 1.8e-96
NP_005993 (OMIM: 603090) ubiquitin carboxyl-termin ( 230) 856 205.4 6.6e-53
XP_016876216 (OMIM: 603090) PREDICTED: ubiquitin c ( 226) 831 199.6 3.5e-51
NP_001257881 (OMIM: 603090) ubiquitin carboxyl-ter ( 194) 742 179.1 4.5e-45
XP_016876215 (OMIM: 603090) PREDICTED: ubiquitin c ( 252) 566 138.7 8.4e-33
XP_016876214 (OMIM: 603090) PREDICTED: ubiquitin c ( 261) 566 138.7 8.7e-33
XP_011533514 (OMIM: 603090) PREDICTED: ubiquitin c ( 294) 566 138.8 9.5e-33
XP_011533515 (OMIM: 603090) PREDICTED: ubiquitin c ( 290) 541 133.0 5.1e-31
XP_011533516 (OMIM: 603090) PREDICTED: ubiquitin c ( 258) 452 112.5 6.7e-25
NP_001186192 (OMIM: 610667) ubiquitin carboxyl-ter ( 316) 228 61.1 2.5e-09
NP_001186191 (OMIM: 610667) ubiquitin carboxyl-ter ( 326) 228 61.1 2.6e-09
NP_001186190 (OMIM: 610667) ubiquitin carboxyl-ter ( 328) 228 61.1 2.6e-09
NP_057068 (OMIM: 610667) ubiquitin carboxyl-termin ( 329) 228 61.1 2.6e-09
XP_016856922 (OMIM: 610667) PREDICTED: ubiquitin c ( 384) 228 61.1 2.9e-09
XP_005245303 (OMIM: 610667) PREDICTED: ubiquitin c ( 393) 228 61.1 3e-09
XP_016856920 (OMIM: 610667) PREDICTED: ubiquitin c ( 394) 228 61.1 3e-09
XP_016856921 (OMIM: 610667) PREDICTED: ubiquitin c ( 394) 228 61.1 3e-09
XP_005245305 (OMIM: 610667) PREDICTED: ubiquitin c ( 319) 210 56.9 4.5e-08
XP_005245304 (OMIM: 610667) PREDICTED: ubiquitin c ( 320) 210 56.9 4.5e-08
XP_016856924 (OMIM: 610667) PREDICTED: ubiquitin c ( 348) 210 56.9 4.8e-08
XP_006711432 (OMIM: 610667) PREDICTED: ubiquitin c ( 410) 201 54.9 2.3e-07
XP_006711431 (OMIM: 610667) PREDICTED: ubiquitin c ( 411) 201 54.9 2.3e-07
XP_016856918 (OMIM: 610667) PREDICTED: ubiquitin c ( 420) 201 54.9 2.3e-07
XP_016856919 (OMIM: 610667) PREDICTED: ubiquitin c ( 420) 201 54.9 2.3e-07
XP_011507906 (OMIM: 610667) PREDICTED: ubiquitin c ( 421) 201 54.9 2.3e-07
XP_006711430 (OMIM: 610667) PREDICTED: ubiquitin c ( 421) 201 54.9 2.3e-07
XP_005245301 (OMIM: 610667) PREDICTED: ubiquitin c ( 422) 201 54.9 2.3e-07
XP_006711429 (OMIM: 610667) PREDICTED: ubiquitin c ( 423) 201 54.9 2.3e-07
XP_016856926 (OMIM: 610667) PREDICTED: ubiquitin c ( 291) 189 52.1 1.2e-06
XP_016856925 (OMIM: 610667) PREDICTED: ubiquitin c ( 292) 189 52.1 1.2e-06
XP_011507909 (OMIM: 610667) PREDICTED: ubiquitin c ( 347) 183 50.7 3.5e-06
XP_016856923 (OMIM: 610667) PREDICTED: ubiquitin c ( 375) 183 50.8 3.7e-06
XP_006711433 (OMIM: 610667) PREDICTED: ubiquitin c ( 376) 183 50.8 3.8e-06
XP_011532454 (OMIM: 603089,614327) PREDICTED: ubiq ( 714) 166 47.0 9.3e-05
XP_011507911 (OMIM: 610667) PREDICTED: ubiquitin c ( 319) 162 45.9 9.4e-05
XP_011507910 (OMIM: 610667) PREDICTED: ubiquitin c ( 319) 162 45.9 9.4e-05
NP_004647 (OMIM: 603089,614327) ubiquitin carboxyl ( 729) 166 47.1 9.5e-05
XP_011532452 (OMIM: 603089,614327) PREDICTED: ubiq ( 737) 166 47.1 9.6e-05
XP_011532451 (OMIM: 603089,614327) PREDICTED: ubiq ( 752) 166 47.1 9.7e-05
XP_016862792 (OMIM: 603089,614327) PREDICTED: ubiq ( 711) 165 46.8 0.00011
XP_011532453 (OMIM: 603089,614327) PREDICTED: ubiq ( 734) 165 46.8 0.00011
XP_016856933 (OMIM: 610667) PREDICTED: ubiquitin c ( 192) 150 43.0 0.00043
XP_016856932 (OMIM: 610667) PREDICTED: ubiquitin c ( 203) 150 43.0 0.00045
XP_016856931 (OMIM: 610667) PREDICTED: ubiquitin c ( 204) 150 43.0 0.00045
XP_016856930 (OMIM: 610667) PREDICTED: ubiquitin c ( 204) 150 43.0 0.00045
XP_016856929 (OMIM: 610667) PREDICTED: ubiquitin c ( 205) 150 43.0 0.00045
XP_005245306 (OMIM: 610667) PREDICTED: ubiquitin c ( 205) 150 43.0 0.00045
>>NP_004172 (OMIM: 191342,613643,615491) ubiquitin carbo (223 aa)
initn: 1485 init1: 1485 opt: 1485 Z-score: 1852.8 bits: 350.0 E(85289): 1.8e-96
Smith-Waterman score: 1485; 100.0% identity (100.0% similar) in 223 aa overlap (1-223:1-223)
10 20 30 40 50 60
pF1KE1 MQLKPMEINPEMLNKVLSRLGVAGQWRFVDVLGLEEESLGSVPAPACALLLLFPLTAQHE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MQLKPMEINPEMLNKVLSRLGVAGQWRFVDVLGLEEESLGSVPAPACALLLLFPLTAQHE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 NFRKKQIEELKGQEVSPKVYFMKQTIGNSCGTIGLIHAVANNQDKLGFEDGSVLKQFLSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 NFRKKQIEELKGQEVSPKVYFMKQTIGNSCGTIGLIHAVANNQDKLGFEDGSVLKQFLSE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 TEKMSPEDRAKCFEKNEAIQAAHDAVAQEGQCRVDDKVNFHFILFNNVDGHLYELDGRMP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 TEKMSPEDRAKCFEKNEAIQAAHDAVAQEGQCRVDDKVNFHFILFNNVDGHLYELDGRMP
130 140 150 160 170 180
190 200 210 220
pF1KE1 FPVNHGASSEDTLLKDAAKVCREFTEREQGEVRFSAVALCKAA
:::::::::::::::::::::::::::::::::::::::::::
NP_004 FPVNHGASSEDTLLKDAAKVCREFTEREQGEVRFSAVALCKAA
190 200 210 220
>>NP_005993 (OMIM: 603090) ubiquitin carboxyl-terminal h (230 aa)
initn: 836 init1: 342 opt: 856 Z-score: 1070.8 bits: 205.4 E(85289): 6.6e-53
Smith-Waterman score: 856; 55.2% identity (83.4% similar) in 223 aa overlap (5-222:8-230)
10 20 30 40 50
pF1KE1 MQLKPMEINPEMLNKVLSRLGVAGQWRFVDVLGLEEESLGSVPAPACALLLLFPLTA
:.: :::. :. :..::. .:.:::: :.. : :. :: :.::.:::::.:
NP_005 MEGQRWLPLEANPEVTNQFLKQLGLHPNWQFVDVYGMDPELLSMVPRPVCAVLLLFPITE
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE1 QHENFRKKQIEELK--GQEVSPKVYFMKQTIGNSCGTIGLIHAVANNQDKLGFEDGSVLK
..: :: .. :..: ::.:. .::::::::.:.:::::::::.:::.::. ::.::.::
NP_005 KYEVFRTEEEEKIKSQGQDVTSSVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSTLK
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE1 QFLSETEKMSPEDRAKCFEKNEAIQAAHDAVAQEGQCR---VDDKVNFHFILFNNVDGHL
.:: :. .::::.::. .:. .::...:.. :.::: . .:.::..::: . .:::::
NP_005 KFLEESVSMSPEERARYLENYDAIRVTHETSAHEGQTEAPSIDEKVDLHFIALVHVDGHL
130 140 150 160 170 180
180 190 200 210 220
pF1KE1 YELDGRMPFPVNHGASSEDTLLKDAAKVCREFTEREQGEVRFSAVALCKAA
:::::: :::.::: .:..:::.:: .::..: ::. :.::.:.:: :
NP_005 YELDGRKPFPINHGETSDETLLEDAIEVCKKFMERDPDELRFNAIALSAA
190 200 210 220 230
>>XP_016876216 (OMIM: 603090) PREDICTED: ubiquitin carbo (226 aa)
initn: 816 init1: 342 opt: 831 Z-score: 1039.9 bits: 199.6 E(85289): 3.5e-51
Smith-Waterman score: 831; 54.7% identity (82.5% similar) in 223 aa overlap (5-222:8-226)
10 20 30 40 50
pF1KE1 MQLKPMEINPEMLNKVLSRLGVAGQWRFVDVLGLEEESLGSVPAPACALLLLFPLTA
:.: :::.:.. ::. .:.:::: :.. : :. :: :.::.:::::.:
XP_016 MEGQRWLPLEANPEFLKQ----LGLHPNWQFVDVYGMDPELLSMVPRPVCAVLLLFPITE
10 20 30 40 50
60 70 80 90 100 110
pF1KE1 QHENFRKKQIEELK--GQEVSPKVYFMKQTIGNSCGTIGLIHAVANNQDKLGFEDGSVLK
..: :: .. :..: ::.:. .::::::::.:.:::::::::.:::.::. ::.::.::
XP_016 KYEVFRTEEEEKIKSQGQDVTSSVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSTLK
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE1 QFLSETEKMSPEDRAKCFEKNEAIQAAHDAVAQEGQCR---VDDKVNFHFILFNNVDGHL
.:: :. .::::.::. .:. .::...:.. :.::: . .:.::..::: . .:::::
XP_016 KFLEESVSMSPEERARYLENYDAIRVTHETSAHEGQTEAPSIDEKVDLHFIALVHVDGHL
120 130 140 150 160 170
180 190 200 210 220
pF1KE1 YELDGRMPFPVNHGASSEDTLLKDAAKVCREFTEREQGEVRFSAVALCKAA
:::::: :::.::: .:..:::.:: .::..: ::. :.::.:.:: :
XP_016 YELDGRKPFPINHGETSDETLLEDAIEVCKKFMERDPDELRFNAIALSAA
180 190 200 210 220
>>NP_001257881 (OMIM: 603090) ubiquitin carboxyl-termina (194 aa)
initn: 730 init1: 342 opt: 742 Z-score: 930.2 bits: 179.1 E(85289): 4.5e-45
Smith-Waterman score: 742; 55.7% identity (84.0% similar) in 194 aa overlap (34-222:1-194)
10 20 30 40 50 60
pF1KE1 KPMEINPEMLNKVLSRLGVAGQWRFVDVLGLEEESLGSVPAPACALLLLFPLTAQHENFR
.. : :. :: :.::.:::::.: ..: ::
NP_001 MDPELLSMVPRPVCAVLLLFPITEKYEVFR
10 20 30
70 80 90 100 110 120
pF1KE1 KKQIEELK--GQEVSPKVYFMKQTIGNSCGTIGLIHAVANNQDKLGFEDGSVLKQFLSET
.. :..: ::.:. .::::::::.:.:::::::::.:::.::. ::.::.::.:: :.
NP_001 TEEEEKIKSQGQDVTSSVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSTLKKFLEES
40 50 60 70 80 90
130 140 150 160 170
pF1KE1 EKMSPEDRAKCFEKNEAIQAAHDAVAQEGQCR---VDDKVNFHFILFNNVDGHLYELDGR
.::::.::. .:. .::...:.. :.::: . .:.::..::: . .:::::::::::
NP_001 VSMSPEERARYLENYDAIRVTHETSAHEGQTEAPSIDEKVDLHFIALVHVDGHLYELDGR
100 110 120 130 140 150
180 190 200 210 220
pF1KE1 MPFPVNHGASSEDTLLKDAAKVCREFTEREQGEVRFSAVALCKAA
:::.::: .:..:::.:: .::..: ::. :.::.:.:: :
NP_001 KPFPINHGETSDETLLEDAIEVCKKFMERDPDELRFNAIALSAA
160 170 180 190
>>XP_016876215 (OMIM: 603090) PREDICTED: ubiquitin carbo (252 aa)
initn: 654 init1: 342 opt: 566 Z-score: 709.9 bits: 138.7 E(85289): 8.4e-33
Smith-Waterman score: 566; 55.0% identity (84.6% similar) in 149 aa overlap (5-151:8-156)
10 20 30 40 50
pF1KE1 MQLKPMEINPEMLNKVLSRLGVAGQWRFVDVLGLEEESLGSVPAPACALLLLFPLTA
:.: :::. :. :..::. .:.:::: :.. : :. :: :.::.:::::.:
XP_016 MEGQRWLPLEANPEVTNQFLKQLGLHPNWQFVDVYGMDPELLSMVPRPVCAVLLLFPITE
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE1 QHENFRKKQIEELK--GQEVSPKVYFMKQTIGNSCGTIGLIHAVANNQDKLGFEDGSVLK
..: :: .. :..: ::.:. .::::::::.:.:::::::::.:::.::. ::.::.::
XP_016 KYEVFRTEEEEKIKSQGQDVTSSVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSTLK
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE1 QFLSETEKMSPEDRAKCFEKNEAIQAAHDAVAQEGQCRVDDKVNFHFILFNNVDGHLYEL
.:: :. .::::.::. .:. .::...:.. :.:::
XP_016 KFLEESVSMSPEERARYLENYDAIRVTHETSAHEGQTESSSPSSSQPHSSHCRTKASSLC
130 140 150 160 170 180
180 190 200 210 220
pF1KE1 DGRMPFPVNHGASSEDTLLKDAAKVCREFTEREQGEVRFSAVALCKAA
XP_016 HHASLPWVKRNHVGPAKATSPSLRLRRWRPFLRLPSLGLHSVAPSIDEKVDLHFIALVHV
190 200 210 220 230 240
>>XP_016876214 (OMIM: 603090) PREDICTED: ubiquitin carbo (261 aa)
initn: 646 init1: 342 opt: 566 Z-score: 709.7 bits: 138.7 E(85289): 8.7e-33
Smith-Waterman score: 566; 55.0% identity (84.6% similar) in 149 aa overlap (5-151:8-156)
10 20 30 40 50
pF1KE1 MQLKPMEINPEMLNKVLSRLGVAGQWRFVDVLGLEEESLGSVPAPACALLLLFPLTA
:.: :::. :. :..::. .:.:::: :.. : :. :: :.::.:::::.:
XP_016 MEGQRWLPLEANPEVTNQFLKQLGLHPNWQFVDVYGMDPELLSMVPRPVCAVLLLFPITE
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE1 QHENFRKKQIEELK--GQEVSPKVYFMKQTIGNSCGTIGLIHAVANNQDKLGFEDGSVLK
..: :: .. :..: ::.:. .::::::::.:.:::::::::.:::.::. ::.::.::
XP_016 KYEVFRTEEEEKIKSQGQDVTSSVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSTLK
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE1 QFLSETEKMSPEDRAKCFEKNEAIQAAHDAVAQEGQCRVDDKVNFHFILFNNVDGHLYEL
.:: :. .::::.::. .:. .::...:.. :.:::
XP_016 KFLEESVSMSPEERARYLENYDAIRVTHETSAHEGQTESSSPSSSQPHSSHCRTKASSLC
130 140 150 160 170 180
180 190 200 210 220
pF1KE1 DGRMPFPVNHGASSEDTLLKDAAKVCREFTEREQGEVRFSAVALCKAA
XP_016 HHASLPWVKRNHVGPAKATSPSLRLRRWRPFLRLPSLGLHSVAPSIDEKVDLHFIALVHV
190 200 210 220 230 240
>>XP_011533514 (OMIM: 603090) PREDICTED: ubiquitin carbo (294 aa)
initn: 836 init1: 342 opt: 566 Z-score: 708.9 bits: 138.8 E(85289): 9.5e-33
Smith-Waterman score: 614; 42.3% identity (62.8% similar) in 253 aa overlap (5-188:8-260)
10 20 30 40 50
pF1KE1 MQLKPMEINPEMLNKVLSRLGVAGQWRFVDVLGLEEESLGSVPAPACALLLLFPLTA
:.: :::. :. :..::. .:.:::: :.. : :. :: :.::.:::::.:
XP_011 MEGQRWLPLEANPEVTNQFLKQLGLHPNWQFVDVYGMDPELLSMVPRPVCAVLLLFPITE
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE1 QHENFRKKQIEELK--GQEVSPKVYFMKQTIGNSCGTIGLIHAVANNQDKLGFEDGSVLK
..: :: .. :..: ::.:. .::::::::.:.:::::::::.:::.::. ::.::.::
XP_011 KYEVFRTEEEEKIKSQGQDVTSSVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSTLK
70 80 90 100 110 120
120 130 140 150
pF1KE1 QFLSETEKMSPEDRAKCFEKNEAIQAAHDAVAQEGQ---------------CR-------
.:: :. .::::.::. .:. .::...:.. :.::: ::
XP_011 KFLEESVSMSPEERARYLENYDAIRVTHETSAHEGQTESSSPSSSQPHSSHCRTKASSLC
130 140 150 160 170 180
160
pF1KE1 ---------------------------------------------VDDKVNFHFILFNNV
.:.::..::: . .:
XP_011 HHASLPWVKRNHVGPAKATSPSLRLRRWRPFLRLPSLGLHSVAPSIDEKVDLHFIALVHV
190 200 210 220 230 240
170 180 190 200 210 220
pF1KE1 DGHLYELDGRMPFPVNHGASSEDTLLKDAAKVCREFTEREQGEVRFSAVALCKAA
:::::::::: :::.::: .
XP_011 DGHLYELDGRKPFPINHGETSDETLLEDAIEVCKKFMERDPDELRFNAIALSAA
250 260 270 280 290
>>XP_011533515 (OMIM: 603090) PREDICTED: ubiquitin carbo (290 aa)
initn: 816 init1: 342 opt: 541 Z-score: 677.9 bits: 133.0 E(85289): 5.1e-31
Smith-Waterman score: 589; 41.9% identity (62.1% similar) in 253 aa overlap (5-188:8-256)
10 20 30 40 50
pF1KE1 MQLKPMEINPEMLNKVLSRLGVAGQWRFVDVLGLEEESLGSVPAPACALLLLFPLTA
:.: :::.:.. ::. .:.:::: :.. : :. :: :.::.:::::.:
XP_011 MEGQRWLPLEANPEFLKQ----LGLHPNWQFVDVYGMDPELLSMVPRPVCAVLLLFPITE
10 20 30 40 50
60 70 80 90 100 110
pF1KE1 QHENFRKKQIEELK--GQEVSPKVYFMKQTIGNSCGTIGLIHAVANNQDKLGFEDGSVLK
..: :: .. :..: ::.:. .::::::::.:.:::::::::.:::.::. ::.::.::
XP_011 KYEVFRTEEEEKIKSQGQDVTSSVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSTLK
60 70 80 90 100 110
120 130 140 150
pF1KE1 QFLSETEKMSPEDRAKCFEKNEAIQAAHDAVAQEGQ---------------CR-------
.:: :. .::::.::. .:. .::...:.. :.::: ::
XP_011 KFLEESVSMSPEERARYLENYDAIRVTHETSAHEGQTESSSPSSSQPHSSHCRTKASSLC
120 130 140 150 160 170
160
pF1KE1 ---------------------------------------------VDDKVNFHFILFNNV
.:.::..::: . .:
XP_011 HHASLPWVKRNHVGPAKATSPSLRLRRWRPFLRLPSLGLHSVAPSIDEKVDLHFIALVHV
180 190 200 210 220 230
170 180 190 200 210 220
pF1KE1 DGHLYELDGRMPFPVNHGASSEDTLLKDAAKVCREFTEREQGEVRFSAVALCKAA
:::::::::: :::.::: .
XP_011 DGHLYELDGRKPFPINHGETSDETLLEDAIEVCKKFMERDPDELRFNAIALSAA
240 250 260 270 280 290
>>XP_011533516 (OMIM: 603090) PREDICTED: ubiquitin carbo (258 aa)
initn: 730 init1: 342 opt: 452 Z-score: 568.0 bits: 112.5 E(85289): 6.7e-25
Smith-Waterman score: 500; 41.1% identity (60.7% similar) in 224 aa overlap (34-188:1-224)
10 20 30 40 50 60
pF1KE1 KPMEINPEMLNKVLSRLGVAGQWRFVDVLGLEEESLGSVPAPACALLLLFPLTAQHENFR
.. : :. :: :.::.:::::.: ..: ::
XP_011 MDPELLSMVPRPVCAVLLLFPITEKYEVFR
10 20 30
70 80 90 100 110 120
pF1KE1 KKQIEELK--GQEVSPKVYFMKQTIGNSCGTIGLIHAVANNQDKLGFEDGSVLKQFLSET
.. :..: ::.:. .::::::::.:.:::::::::.:::.::. ::.::.::.:: :.
XP_011 TEEEEKIKSQGQDVTSSVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSTLKKFLEES
40 50 60 70 80 90
130 140 150
pF1KE1 EKMSPEDRAKCFEKNEAIQAAHDAVAQEGQ---------------CR-------------
.::::.::. .:. .::...:.. :.::: ::
XP_011 VSMSPEERARYLENYDAIRVTHETSAHEGQTESSSPSSSQPHSSHCRTKASSLCHHASLP
100 110 120 130 140 150
160 170
pF1KE1 ---------------------------------------VDDKVNFHFILFNNVDGHLYE
.:.::..::: . .:::::::
XP_011 WVKRNHVGPAKATSPSLRLRRWRPFLRLPSLGLHSVAPSIDEKVDLHFIALVHVDGHLYE
160 170 180 190 200 210
180 190 200 210 220
pF1KE1 LDGRMPFPVNHGASSEDTLLKDAAKVCREFTEREQGEVRFSAVALCKAA
:::: :::.::: .
XP_011 LDGRKPFPINHGETSDETLLEDAIEVCKKFMERDPDELRFNAIALSAA
220 230 240 250
>>NP_001186192 (OMIM: 610667) ubiquitin carboxyl-termina (316 aa)
initn: 133 init1: 107 opt: 228 Z-score: 288.4 bits: 61.1 E(85289): 2.5e-09
Smith-Waterman score: 232; 24.2% identity (61.2% similar) in 227 aa overlap (6-219:11-223)
10 20 30 40 50
pF1KE1 MQLKPMEINPEMLNKVLSRLGVAGQWRFVDVLGLEEESLGSVPAPACALLLLFPL
:: .: ....... .: : . .. .:: :.. .. :. .:..::
NP_001 MTGNAGEWCLMESDPGVFTELIKGFGCRGA-QVEEIWSLEPENFEKLK-PVHGLIFLF--
10 20 30 40 50
60 70 80 90 100
pF1KE1 TAQHENFRKKQIEELKGQEVSPK----VYFMKQTIGNSCGTIGLIHAVAN--NQDKLGFE
. . :: :. :. . ..: ::.:.:.:.: ... .. : .:: .
NP_001 -------KWQPGEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQD---VH
60 70 80 90 100
110 120 130 140 150 160
pF1KE1 DGSVLKQFLSETEKMSPEDRAKCFEKNEAIQAAHDAVAQEGQCRVDDKVN------FHFI
: .:..: ..... .. . ....:. .:.. :.. . . : :.. :::.
NP_001 LGETLSEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFDTKTSAKEEDAFHFV
110 120 130 140 150 160
170 180 190 200 210 220
pF1KE1 LFNNVDGHLYELDGRMPFPVNHGASSEDTLLKDAAKVCREFTER-EQGEVRFSAVALCKA
. :.:.:::::: :.. :: ..: .. . : .. .. .::.::. .:.
NP_001 SYVPVNGRLYELDGLREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSD
170 180 190 200 210 220
pF1KE1 A
NP_001 RKMIYEQKIAELQRQLAEEPMDTDQGNSMLSAIQSEVAKNQMLIEEEVQKLKRYKIENIR
230 240 250 260 270 280
223 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 03:07:26 2016 done: Mon Nov 7 03:07:27 2016
Total Scan time: 6.260 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]