FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1331, 336 aa
  1>>>pF1KE1331 336 - 336 aa - 336 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.7700+/-0.000339; mu= 19.2172+/- 0.021
 mean_var=70.7534+/-14.674, 0's: 0 Z-trim(115.7): 66  B-trim: 1493 in 1/49
 Lambda= 0.152476
 statistics sampled from 26203 (26271) to 26203 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.677), E-opt: 0.2 (0.308), width:  16
 Scan time:  7.430

The best scores are:                                      opt bits E(85289)
NP_002027 (OMIM: 110700,611162,611862,613665) atyp ( 336) 2273 509.0 5.8e-144
NP_001116423 (OMIM: 110700,611162,611862,613665) a ( 338) 2217 496.7  3e-140
NP_001287 (OMIM: 602648) atypical chemokine recept ( 384)  160 44.2 0.00053


>>NP_002027 (OMIM: 110700,611162,611862,613665) atypical  (336 aa)
 initn: 2273 init1: 2273 opt: 2273  Z-score: 2705.6  bits: 509.0 E(85289): 5.8e-144
Smith-Waterman score: 2273; 99.7% identity (99.7% similar) in 336 aa overlap (1-336:1-336)

               10        20        30        40        50        60
pF1KE1 MGNCLHRAELSPSTENSSQLDFEDVWNSSYGVNDSFPDGDYGANLEAAAPCHSCNLLDDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MGNCLHRAELSPSTENSSQLDFEDVWNSSYGVNDSFPDGDYGANLEAAAPCHSCNLLDDS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 ALPFFILTSVLGILASSTVLFMLFRPLFRWQLCPGWPVLAQLAVGSALFSIVVPVLAPGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 ALPFFILTSVLGILASSTVLFMLFRPLFRWQLCPGWPVLAQLAVGSALFSIVVPVLAPGL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 GSTRSSALCSLGYCVWYGSAFAQALLLGCHASLGHRLGAGQVPGLTLGLTVGIWGVAALL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 GSTRSSALCSLGYCVWYGSAFAQALLLGCHASLGHRLGAGQVPGLTLGLTVGIWGVAALL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 TLPVTLASGASGGLCTLIYSTELKALQATHTVACLAIFVLLPLGLFGAKGLKKALGMGPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 TLPVTLASGASGGLCTLIYSTELKALQATHTVACLAIFVLLPLGLFGAKGLKKALGMGPG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 PWMNILWAWFIFWWPHGVVLGLDFLVRSKLLLLSTCLAQQALDLLLNLAEALAILHCVAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 PWMNILWAWFIFWWPHGVVLGLDFLVRSKLLLLSTCLAQQALDLLLNLAEALAILHCVAT
              250       260       270       280       290       300

              310       320       330      
pF1KE1 PLLLALFCHQATRTLLPSLPLPEGWFSHLDTLGSKS
       ::::::::::::::::::::::::: ::::::::::
NP_002 PLLLALFCHQATRTLLPSLPLPEGWSSHLDTLGSKS
              310       320       330      

>>NP_001116423 (OMIM: 110700,611162,611862,613665) atypi  (338 aa)
 initn: 2217 init1: 2217 opt: 2217  Z-score: 2639.0  bits: 496.7 E(85289): 3e-140
Smith-Waterman score: 2217; 99.4% identity (99.7% similar) in 330 aa overlap (7-336:9-338)

                 10        20        30        40        50        
pF1KE1   MGNCLHRAELSPSTENSSQLDFEDVWNSSYGVNDSFPDGDYGANLEAAAPCHSCNLLD
               .:::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MASSGYVLQAELSPSTENSSQLDFEDVWNSSYGVNDSFPDGDYGANLEAAAPCHSCNLLD
               10        20        30        40        50        60

       60        70        80        90       100       110        
pF1KE1 DSALPFFILTSVLGILASSTVLFMLFRPLFRWQLCPGWPVLAQLAVGSALFSIVVPVLAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DSALPFFILTSVLGILASSTVLFMLFRPLFRWQLCPGWPVLAQLAVGSALFSIVVPVLAP
               70        80        90       100       110       120

      120       130       140       150       160       170        
pF1KE1 GLGSTRSSALCSLGYCVWYGSAFAQALLLGCHASLGHRLGAGQVPGLTLGLTVGIWGVAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GLGSTRSSALCSLGYCVWYGSAFAQALLLGCHASLGHRLGAGQVPGLTLGLTVGIWGVAA
              130       140       150       160       170       180

      180       190       200       210       220       230        
pF1KE1 LLTLPVTLASGASGGLCTLIYSTELKALQATHTVACLAIFVLLPLGLFGAKGLKKALGMG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LLTLPVTLASGASGGLCTLIYSTELKALQATHTVACLAIFVLLPLGLFGAKGLKKALGMG
              190       200       210       220       230       240

      240       250       260       270       280       290        
pF1KE1 PGPWMNILWAWFIFWWPHGVVLGLDFLVRSKLLLLSTCLAQQALDLLLNLAEALAILHCV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PGPWMNILWAWFIFWWPHGVVLGLDFLVRSKLLLLSTCLAQQALDLLLNLAEALAILHCV
              250       260       270       280       290       300

      300       310       320       330      
pF1KE1 ATPLLLALFCHQATRTLLPSLPLPEGWFSHLDTLGSKS
       ::::::::::::::::::::::::::: ::::::::::
NP_001 ATPLLLALFCHQATRTLLPSLPLPEGWSSHLDTLGSKS
              310       320       330        

>>NP_001287 (OMIM: 602648) atypical chemokine receptor 2  (384 aa)
 initn: 117 init1: 117 opt: 160  Z-score: 192.8  bits: 44.2 E(85289): 0.00053
Smith-Waterman score: 199; 25.0% identity (54.3% similar) in 300 aa overlap (62-329:49-335)

              40        50        60         70        80        90
pF1KE1 VNDSFPDGDYGANLEAAAPCHSCNLLDDSALP-FFILTSVLGILASSTVLFMLFRPLFRW
                                     :: :. :  :::. ..  .:..:.: . : 
NP_001 NSSFYYYDYLDEVAFMLCRKDAVVSFGKVFLPVFYSLIFVLGLSGNLLLLMVLLRYVPRR
       20        30        40        50        60        70        

              100       110       120         130       140        
pF1KE1 QLCPGWPVLAQLAVGSALFSIVVPVLAPGLGS--TRSSALCSLGYCVWYGSAFAQALLLG
       ..   .  : .::... :: ...:  . ...   . .: ::..   ..  . ..  ....
NP_001 RMVEIY--LLNLAISNLLFLVTLPFWGISVAWHWVFGSFLCKMVSTLYTINFYSGIFFIS
       80          90       100       110       120       130      

                150       160       170       180           190    
pF1KE1 C----------HASLGHRLGAGQVPGLTLGLTVGIWGVAALLTLP----VTLASGASG--
       :          ::.  :::   .. . .: :.. .:.:.  ...:    :    . .:  
NP_001 CMSLDKYLEIVHAQPYHRL---RTRAKSLLLATIVWAVSLAVSIPDMVFVQTHENPKGVW
        140       150          160       170       180       190   

                  200         210        220       230       240   
pF1KE1 ------GLCTLIYSTELKALQAT--HTVACLA-IFVLLPLGLFGAKGLKKALGMGPGPWM
             :    :..  :.  :      .  :: ::    .:   .. :. :   : :  .
NP_001 NCHADFGGHGTIWKLFLRFQQNLLGFLLPLLAMIFFYSRIGCVLVR-LRPA---GQGRAL
           200       210       220       230        240            

               250       260       270       280       290         
pF1KE1 NI----LWAWFIFWWPHGVVLGLDFLVRSKLLLLSTCLAQQALDLLLNLAEALAILHCVA
       .:    . :.:..:.:....: :  :.   : ....: ..: ::  :...:..:.:::  
NP_001 KIAAALVVAFFVLWFPYNLTLFLHTLL--DLQVFGNCEVSQHLDYALQVTESIAFLHCCF
     250       260       270         280       290       300       

     300       310       320       330                             
pF1KE1 TPLLLALFCHQATRTLLPSLPLPEGWFSHLDTLGSKS                       
       .:.: :.  :.  . :   :    ::  ::                              
NP_001 SPILYAFSSHRFRQYLKAFLAAVLGW--HLAPGTAQASLSSCSESSILTAQEEMTGMNDL
       310       320       330         340       350       360     




336 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 22:47:49 2016 done: Sun Nov  6 22:47:50 2016
 Total Scan time:  7.430 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]