Result of FASTA (ccds) for
pFN21AE1330
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1330, 132 aa
1>>>pF1KE1330 132 - 132 aa - 132 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1803+/-0.000753; mu= 11.5908+/- 0.045
mean_var=67.7341+/-14.054, 0's: 0 Z-trim(108.8): 94 B-trim: 358 in 1/50
Lambda= 0.155837
statistics sampled from 10339 (10450) to 10339 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.725), E-opt: 0.2 (0.321), width: 16
Scan time: 1.220
The best scores are: opt bits E(32554)
CCDS30928.1 SH2D1B gene_id:117157|Hs108|chr1 ( 132) 888 207.9 1.5e-54
CCDS48162.1 SH2D1A gene_id:4068|Hs108|chrX ( 125) 355 88.1 1.7e-18
CCDS14608.1 SH2D1A gene_id:4068|Hs108|chrX ( 128) 350 86.9 3.7e-18
CCDS8213.1 INPPL1 gene_id:3636|Hs108|chr11 (1258) 285 73.0 5.8e-13
CCDS77543.1 INPP5D gene_id:3635|Hs108|chr2 (1188) 260 67.3 2.7e-11
CCDS74672.1 INPP5D gene_id:3635|Hs108|chr2 (1189) 260 67.3 2.7e-11
>>CCDS30928.1 SH2D1B gene_id:117157|Hs108|chr1 (132 aa)
initn: 888 init1: 888 opt: 888 Z-score: 1093.0 bits: 207.9 E(32554): 1.5e-54
Smith-Waterman score: 888; 100.0% identity (100.0% similar) in 132 aa overlap (1-132:1-132)
10 20 30 40 50 60
pF1KE1 MDLPYYHGRLTKQDCETLLLKEGVDGNFLLRDSESIPGVLCLCVSFKNIVYTYRIFREKH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MDLPYYHGRLTKQDCETLLLKEGVDGNFLLRDSESIPGVLCLCVSFKNIVYTYRIFREKH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 GYYRIQTAEGSPKQVFPSLKELISKFEKPNQGMVVHLLKPIKRTSPSLRWRGLKLELETF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 GYYRIQTAEGSPKQVFPSLKELISKFEKPNQGMVVHLLKPIKRTSPSLRWRGLKLELETF
70 80 90 100 110 120
130
pF1KE1 VNSNSDYVDVLP
::::::::::::
CCDS30 VNSNSDYVDVLP
130
>>CCDS48162.1 SH2D1A gene_id:4068|Hs108|chrX (125 aa)
initn: 376 init1: 346 opt: 355 Z-score: 445.7 bits: 88.1 E(32554): 1.7e-18
Smith-Waterman score: 355; 43.5% identity (73.0% similar) in 115 aa overlap (1-114:1-115)
10 20 30 40 50
pF1KE1 MD-LPYYHGRLTKQDCETLLLKEGVDGNFLLRDSESIPGVLCLCVSFKNIVYTYRIFREK
:: . :::..... : ::: :.::..:::::::.::: :::: ... .::::. . .
CCDS48 MDAVAVYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTE
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE1 HGYYRIQTAEGSPKQVFPSLKELISKFEKPNQGMVVHLLKPIKRTSPSLRWRGLKLELET
: . .:: : :. : ..:.::: :.::.::.:. : :... : . .:..
CCDS48 TGSWSAETAPGVHKRYFRKIKNLISAFQKPDQGIVIPLQYPVEKKSSARSTQGIREDPDV
70 80 90 100 110 120
120 130
pF1KE1 FVNSNSDYVDVLP
CCDS48 CLKAP
>>CCDS14608.1 SH2D1A gene_id:4068|Hs108|chrX (128 aa)
initn: 376 init1: 346 opt: 350 Z-score: 439.5 bits: 86.9 E(32554): 3.7e-18
Smith-Waterman score: 350; 44.2% identity (72.6% similar) in 113 aa overlap (1-112:1-113)
10 20 30 40 50
pF1KE1 MD-LPYYHGRLTKQDCETLLLKEGVDGNFLLRDSESIPGVLCLCVSFKNIVYTYRIFREK
:: . :::..... : ::: :.::..:::::::.::: :::: ... .::::. . .
CCDS14 MDAVAVYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTE
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE1 HGYYRIQTAEGSPKQVFPSLKELISKFEKPNQGMVVHLLKPIKRTSPSLRWRGLKLELET
: . .:: : :. : ..:.::: :.::.::.:. : :... : . .:
CCDS14 TGSWSAETAPGVHKRYFRKIKNLISAFQKPDQGIVIPLQYPVEKKSSARSTQGTTGIRED
70 80 90 100 110 120
120 130
pF1KE1 FVNSNSDYVDVLP
CCDS14 PDVCLKAP
>>CCDS8213.1 INPPL1 gene_id:3636|Hs108|chr11 (1258 aa)
initn: 283 init1: 283 opt: 285 Z-score: 346.1 bits: 73.0 E(32554): 5.8e-13
Smith-Waterman score: 285; 42.9% identity (71.4% similar) in 98 aa overlap (5-102:21-118)
10 20 30 40
pF1KE1 MDLPYYHGRLTKQDCETLLLKEGVDGNFLLRDSESIPGVLCLCV
.:: :.. : :: . : ::.::.:::::. :.. :::
CCDS82 MASACGAPGPGGALGSQAPSWYHRDLSRAAAEELLARAGRDGSFLVRDSESVAGAFALCV
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE1 SFKNIVYTYRIFREKHGYYRIQTAEGSPKQVFPSLKELISKFEKPNQGMVVHLLKPIKRT
... :.::::. . . . .::..: : . : .: :::. . .::::.: :: :..
CCDS82 LYQKHVHTYRILPDGEDFLAVQTSQGVPVRRFQTLGELIGLYAQPNQGLVCALLLPVEGE
70 80 90 100 110 120
110 120 130
pF1KE1 SPSLRWRGLKLELETFVNSNSDYVDVLP
CCDS82 REPDPPDDRDASDGEDEKPPLPPRSGSTSISAPTGPSSPLPAPETPTAPAAESAPNGLST
130 140 150 160 170 180
>>CCDS77543.1 INPP5D gene_id:3635|Hs108|chr2 (1188 aa)
initn: 260 init1: 260 opt: 260 Z-score: 316.1 bits: 67.3 E(32554): 2.7e-11
Smith-Waterman score: 260; 42.1% identity (68.4% similar) in 95 aa overlap (7-101:7-101)
10 20 30 40 50 60
pF1KE1 MDLPYYHGRLTKQDCETLLLKEGVDGNFLLRDSESIPGVLCLCVSFKNIVYTYRIFREKH
:: .:.. : :: . : ::.::.: :::: . ::: ..: ::::::. ..
CCDS77 MVPCWNHGNITRSKAEELLSRTGKDGSFLVRASESISRAYALCVLYRNCVYTYRILPNED
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 GYYRIQTAEGSPKQVFPSLKELISKFEKPNQGMVVHLLKPIKRTSPSLRWRGLKLELETF
. .:..:: . : .: .:: ..: :.:.:.:: :.
CCDS77 DKFTVQASEGVSMRFFTKLDQLIEFYKKENMGLVTHLQYPVPLEEEDTGDDPEEDTESVV
70 80 90 100 110 120
130
pF1KE1 VNSNSDYVDVLP
CCDS77 SPPELPPRNIPLTASSCEAKEVPFSNENPRATETSRPSLSETLFQRLQSMDTSGLPEEHL
130 140 150 160 170 180
>>CCDS74672.1 INPP5D gene_id:3635|Hs108|chr2 (1189 aa)
initn: 260 init1: 260 opt: 260 Z-score: 316.1 bits: 67.3 E(32554): 2.7e-11
Smith-Waterman score: 260; 42.1% identity (68.4% similar) in 95 aa overlap (7-101:7-101)
10 20 30 40 50 60
pF1KE1 MDLPYYHGRLTKQDCETLLLKEGVDGNFLLRDSESIPGVLCLCVSFKNIVYTYRIFREKH
:: .:.. : :: . : ::.::.: :::: . ::: ..: ::::::. ..
CCDS74 MVPCWNHGNITRSKAEELLSRTGKDGSFLVRASESISRAYALCVLYRNCVYTYRILPNED
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 GYYRIQTAEGSPKQVFPSLKELISKFEKPNQGMVVHLLKPIKRTSPSLRWRGLKLELETF
. .:..:: . : .: .:: ..: :.:.:.:: :.
CCDS74 DKFTVQASEGVSMRFFTKLDQLIEFYKKENMGLVTHLQYPVPLEEEDTGDDPEEDTVESV
70 80 90 100 110 120
130
pF1KE1 VNSNSDYVDVLP
CCDS74 VSPPELPPRNIPLTASSCEAKEVPFSNENPRATETSRPSLSETLFQRLQSMDTSGLPEEH
130 140 150 160 170 180
132 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 22:42:32 2016 done: Sun Nov 6 22:42:32 2016
Total Scan time: 1.220 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]