FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1323, 95 aa
  1>>>pF1KE1323 95 - 95 aa - 95 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.5205+/-0.000627; mu= 12.3952+/- 0.038
 mean_var=49.5666+/- 9.957, 0's: 0 Z-trim(110.0): 43  B-trim: 50 in 1/47
 Lambda= 0.182171
 statistics sampled from 11228 (11271) to 11228 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.734), E-opt: 0.2 (0.346), width:  16
 Scan time:  1.440

The best scores are:                                      opt bits E(32554)
CCDS46536.1 CCL20 gene_id:6364|Hs108|chr2          (  95)  644 176.1 2.9e-45
CCDS2469.1 CCL20 gene_id:6364|Hs108|chr2           (  96)  632 172.9 2.6e-44


>>CCDS46536.1 CCL20 gene_id:6364|Hs108|chr2               (95 aa)
 initn: 644 init1: 644 opt: 644  Z-score: 926.2  bits: 176.1 E(32554): 2.9e-45
Smith-Waterman score: 644; 100.0% identity (100.0% similar) in 95 aa overlap (1-95:1-95)

               10        20        30        40        50        60
pF1KE1 MCCTKSLLLAALMSVLLLHLCGESEASNFDCCLGYTDRILHPKFIVGFTRQLANEGCDIN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MCCTKSLLLAALMSVLLLHLCGESEASNFDCCLGYTDRILHPKFIVGFTRQLANEGCDIN
               10        20        30        40        50        60

               70        80        90     
pF1KE1 AIIFHTKKKLSVCANPKQTWVKYIVRLLSKKVKNM
       :::::::::::::::::::::::::::::::::::
CCDS46 AIIFHTKKKLSVCANPKQTWVKYIVRLLSKKVKNM
               70        80        90     

>>CCDS2469.1 CCL20 gene_id:6364|Hs108|chr2                (96 aa)
 initn: 484 init1: 484 opt: 632  Z-score: 909.0  bits: 172.9 E(32554): 2.6e-44
Smith-Waterman score: 632; 99.0% identity (99.0% similar) in 96 aa overlap (1-95:1-96)

               10        20         30        40        50         
pF1KE1 MCCTKSLLLAALMSVLLLHLCGESEA-SNFDCCLGYTDRILHPKFIVGFTRQLANEGCDI
       :::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::
CCDS24 MCCTKSLLLAALMSVLLLHLCGESEAASNFDCCLGYTDRILHPKFIVGFTRQLANEGCDI
               10        20        30        40        50        60

      60        70        80        90     
pF1KE1 NAIIFHTKKKLSVCANPKQTWVKYIVRLLSKKVKNM
       ::::::::::::::::::::::::::::::::::::
CCDS24 NAIIFHTKKKLSVCANPKQTWVKYIVRLLSKKVKNM
               70        80        90      




95 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 22:13:47 2016 done: Sun Nov  6 22:13:48 2016
 Total Scan time:  1.440 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]