FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1319, 313 aa
  1>>>pF1KE1319 313 - 313 aa - 313 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3529+/-0.000288; mu= 16.2815+/- 0.018
 mean_var=72.2790+/-14.340, 0's: 0 Z-trim(118.3): 6  B-trim: 0 in 0/53
 Lambda= 0.150858
 statistics sampled from 31013 (31018) to 31013 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.732), E-opt: 0.2 (0.364), width:  16
 Scan time:  7.960

The best scores are:                                      opt bits E(85289)
NP_001062 (OMIM: 188350) thymidylate synthase [Hom ( 313) 2172 481.4  1e-135


>>NP_001062 (OMIM: 188350) thymidylate synthase [Homo sa  (313 aa)
 initn: 2172 init1: 2172 opt: 2172  Z-score: 2557.3  bits: 481.4 E(85289): 1e-135
Smith-Waterman score: 2172; 100.0% identity (100.0% similar) in 313 aa overlap (1-313:1-313)

               10        20        30        40        50        60
pF1KE1 MPVAGSELPRRPLPPAAQERDAEPRPPHGELQYLGQIQHILRCGVRKDDRTGTGTLSVFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPVAGSELPRRPLPPAAQERDAEPRPPHGELQYLGQIQHILRCGVRKDDRTGTGTLSVFG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 MQARYSLRDEFPLLTTKRVFWKGVLEELLWFIKGSTNAKELSSKGVKIWDANGSRDFLDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MQARYSLRDEFPLLTTKRVFWKGVLEELLWFIKGSTNAKELSSKGVKIWDANGSRDFLDS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 LGFSTREEGDLGPVYGFQWRHFGAEYRDMESDYSGQGVDQLQRVIDTIKTNPDDRRIIMC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LGFSTREEGDLGPVYGFQWRHFGAEYRDMESDYSGQGVDQLQRVIDTIKTNPDDRRIIMC
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 AWNPRDLPLMALPPCHALCQFYVVNSELSCQLYQRSGDMGLGVPFNIASYALLTYMIAHI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AWNPRDLPLMALPPCHALCQFYVVNSELSCQLYQRSGDMGLGVPFNIASYALLTYMIAHI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 TGLKPGDFIHTLGDAHIYLNHIEPLKIQLQREPRPFPKLRILRKVEKIDDFKAEDFQIEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TGLKPGDFIHTLGDAHIYLNHIEPLKIQLQREPRPFPKLRILRKVEKIDDFKAEDFQIEG
              250       260       270       280       290       300

              310   
pF1KE1 YNPHPTIKMEMAV
       :::::::::::::
NP_001 YNPHPTIKMEMAV
              310   




313 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 23:25:58 2016 done: Sun Nov  6 23:25:59 2016
 Total Scan time:  7.960 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]