FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1316, 273 aa
  1>>>pF1KE1316 273 - 273 aa - 273 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8176+/-0.000306; mu= 15.1328+/- 0.019
 mean_var=109.2920+/-22.389, 0's: 0 Z-trim(119.2): 6  B-trim: 0 in 0/54
 Lambda= 0.122682
 statistics sampled from 32986 (32992) to 32986 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.735), E-opt: 0.2 (0.387), width:  16
 Scan time:  5.850

The best scores are:                                      opt bits E(85289)
NP_000371 (OMIM: 278700,611153) DNA repair protein ( 273) 1832 334.2 1.6e-91
XP_006717341 (OMIM: 278700,611153) PREDICTED: DNA  ( 262) 1715 313.5 2.7e-85
XP_016870603 (OMIM: 278700,611153) PREDICTED: DNA  ( 231) 1488 273.2   3e-73


>>NP_000371 (OMIM: 278700,611153) DNA repair protein com  (273 aa)
 initn: 1832 init1: 1832 opt: 1832  Z-score: 1764.1  bits: 334.2 E(85289): 1.6e-91
Smith-Waterman score: 1832; 100.0% identity (100.0% similar) in 273 aa overlap (1-273:1-273)

               10        20        30        40        50        60
pF1KE1 MAAADGALPEAAALEQPAELPASVRASIERKRQRALMLRQARLAARPYSATAAAATGGMA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MAAADGALPEAAALEQPAELPASVRASIERKRQRALMLRQARLAARPYSATAAAATGGMA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 NVKAAPKIIDTGGGFILEEEEEEEQKIGKVVHQPGPVMEFDYVICEECGKEFMDSYLMNH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 NVKAAPKIIDTGGGFILEEEEEEEQKIGKVVHQPGPVMEFDYVICEECGKEFMDSYLMNH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 FDLPTCDNCRDADDKHKLITKTEAKQEYLLKDCDLEKREPPLKFIVKKNPHHSQWGDMKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 FDLPTCDNCRDADDKHKLITKTEAKQEYLLKDCDLEKREPPLKFIVKKNPHHSQWGDMKL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 YLKLQIVKRSLEVWGSQEALEEAKEVRQENREKMKQKKFDKKVKELRRAVRSSVWKRETI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 YLKLQIVKRSLEVWGSQEALEEAKEVRQENREKMKQKKFDKKVKELRRAVRSSVWKRETI
              190       200       210       220       230       240

              250       260       270   
pF1KE1 VHQHEYGPEENLEDDMYRKTCTMCGHELTYEKM
       :::::::::::::::::::::::::::::::::
NP_000 VHQHEYGPEENLEDDMYRKTCTMCGHELTYEKM
              250       260       270   

>>XP_006717341 (OMIM: 278700,611153) PREDICTED: DNA repa  (262 aa)
 initn: 1715 init1: 1715 opt: 1715  Z-score: 1652.4  bits: 313.5 E(85289): 2.7e-85
Smith-Waterman score: 1715; 100.0% identity (100.0% similar) in 257 aa overlap (1-257:1-257)

               10        20        30        40        50        60
pF1KE1 MAAADGALPEAAALEQPAELPASVRASIERKRQRALMLRQARLAARPYSATAAAATGGMA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MAAADGALPEAAALEQPAELPASVRASIERKRQRALMLRQARLAARPYSATAAAATGGMA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 NVKAAPKIIDTGGGFILEEEEEEEQKIGKVVHQPGPVMEFDYVICEECGKEFMDSYLMNH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 NVKAAPKIIDTGGGFILEEEEEEEQKIGKVVHQPGPVMEFDYVICEECGKEFMDSYLMNH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 FDLPTCDNCRDADDKHKLITKTEAKQEYLLKDCDLEKREPPLKFIVKKNPHHSQWGDMKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 FDLPTCDNCRDADDKHKLITKTEAKQEYLLKDCDLEKREPPLKFIVKKNPHHSQWGDMKL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 YLKLQIVKRSLEVWGSQEALEEAKEVRQENREKMKQKKFDKKVKELRRAVRSSVWKRETI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 YLKLQIVKRSLEVWGSQEALEEAKEVRQENREKMKQKKFDKKVKELRRAVRSSVWKRETI
              190       200       210       220       230       240

              250       260       270   
pF1KE1 VHQHEYGPEENLEDDMYRKTCTMCGHELTYEKM
       :::::::::::::::::                
XP_006 VHQHEYGPEENLEDDMYPLKYQ           
              250       260             

>>XP_016870603 (OMIM: 278700,611153) PREDICTED: DNA repa  (231 aa)
 initn: 1488 init1: 1488 opt: 1488  Z-score: 1436.0  bits: 273.2 E(85289): 3e-73
Smith-Waterman score: 1488; 98.6% identity (99.1% similar) in 220 aa overlap (54-273:12-231)

            30        40        50        60        70        80   
pF1KE1 VRASIERKRQRALMLRQARLAARPYSATAAAATGGMANVKAAPKIIDTGGGFILEEEEEE
                                     :.  ::::::::::::::::::::::::::
XP_016                    MFILTPKLQIPATFDGMANVKAAPKIIDTGGGFILEEEEEE
                                  10        20        30        40 

            90       100       110       120       130       140   
pF1KE1 EQKIGKVVHQPGPVMEFDYVICEECGKEFMDSYLMNHFDLPTCDNCRDADDKHKLITKTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EQKIGKVVHQPGPVMEFDYVICEECGKEFMDSYLMNHFDLPTCDNCRDADDKHKLITKTE
              50        60        70        80        90       100 

           150       160       170       180       190       200   
pF1KE1 AKQEYLLKDCDLEKREPPLKFIVKKNPHHSQWGDMKLYLKLQIVKRSLEVWGSQEALEEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AKQEYLLKDCDLEKREPPLKFIVKKNPHHSQWGDMKLYLKLQIVKRSLEVWGSQEALEEA
             110       120       130       140       150       160 

           210       220       230       240       250       260   
pF1KE1 KEVRQENREKMKQKKFDKKVKELRRAVRSSVWKRETIVHQHEYGPEENLEDDMYRKTCTM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KEVRQENREKMKQKKFDKKVKELRRAVRSSVWKRETIVHQHEYGPEENLEDDMYRKTCTM
             170       180       190       200       210       220 

           270   
pF1KE1 CGHELTYEKM
       ::::::::::
XP_016 CGHELTYEKM
             230 




273 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 22:54:45 2016 done: Sun Nov  6 22:54:45 2016
 Total Scan time:  5.850 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]