FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1311, 469 aa
  1>>>pF1KE1311 469 - 469 aa - 469 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9773+/-0.000895; mu= 15.6124+/- 0.054
 mean_var=95.4023+/-18.780, 0's: 0 Z-trim(107.8): 20  B-trim: 0 in 0/51
 Lambda= 0.131309
 statistics sampled from 9767 (9783) to 9767 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.665), E-opt: 0.2 (0.301), width:  16
 Scan time:  2.850

The best scores are:                                      opt bits E(32554)
CCDS7567.1 PDCD4 gene_id:27250|Hs108|chr10         ( 469) 3071 592.2  4e-169
CCDS44478.1 PDCD4 gene_id:27250|Hs108|chr10        ( 458) 2973 573.6 1.5e-163


>>CCDS7567.1 PDCD4 gene_id:27250|Hs108|chr10              (469 aa)
 initn: 3071 init1: 3071 opt: 3071  Z-score: 3149.9  bits: 592.2 E(32554): 4e-169
Smith-Waterman score: 3071; 99.6% identity (99.8% similar) in 469 aa overlap (1-469:1-469)

               10        20        30        40        50        60
pF1KE1 MDVENEQILNVNPADPDNLSDSLFSGDEENAGTEEVKNEINGNWISAYSINEARINAKAK
       :::::::::::::::::::::::::::::::::::.::::::::::: ::::::::::::
CCDS75 MDVENEQILNVNPADPDNLSDSLFSGDEENAGTEEIKNEINGNWISASSINEARINAKAK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 RRLRKNSSRDSGRGDSVSDSGSDALRSGLTVPTSPKGRLLDRRSRSGKGRGLPKKGGAGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 RRLRKNSSRDSGRGDSVSDSGSDALRSGLTVPTSPKGRLLDRRSRSGKGRGLPKKGGAGG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 KGVWGTPGQVYDVEEVDVKDPNYDDDQENCVYETVVLPLDERAFEKTLTPIIQEYFEHGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 KGVWGTPGQVYDVEEVDVKDPNYDDDQENCVYETVVLPLDERAFEKTLTPIIQEYFEHGD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 TNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTTDVEKSF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 TNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTTDVEKSF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 DKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 DKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 LLSMSKGGKRKDSVWGSGGGQQSVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 LLSMSKGGKRKDSVWGSGGGQQSVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFH
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYERIYNEIPDINLDVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYERIYNEIPDINLDVP
              370       380       390       400       410       420

              430       440       450       460         
pF1KE1 HSYSVLERFVEECFQAGIISKQLRDLCPSRGRKRFVSEGDGGRLKPESY
       :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 HSYSVLERFVEECFQAGIISKQLRDLCPSRGRKRFVSEGDGGRLKPESY
              430       440       450       460         

>>CCDS44478.1 PDCD4 gene_id:27250|Hs108|chr10             (458 aa)
 initn: 2973 init1: 2973 opt: 2973  Z-score: 3049.7  bits: 573.6 E(32554): 1.5e-163
Smith-Waterman score: 2973; 99.6% identity (99.8% similar) in 454 aa overlap (16-469:5-458)

               10        20        30        40        50        60
pF1KE1 MDVENEQILNVNPADPDNLSDSLFSGDEENAGTEEVKNEINGNWISAYSINEARINAKAK
                      ::::::::::::::::::::.::::::::::: ::::::::::::
CCDS44            MTKYPDNLSDSLFSGDEENAGTEEIKNEINGNWISASSINEARINAKAK
                          10        20        30        40         

               70        80        90       100       110       120
pF1KE1 RRLRKNSSRDSGRGDSVSDSGSDALRSGLTVPTSPKGRLLDRRSRSGKGRGLPKKGGAGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 RRLRKNSSRDSGRGDSVSDSGSDALRSGLTVPTSPKGRLLDRRSRSGKGRGLPKKGGAGG
      50        60        70        80        90       100         

              130       140       150       160       170       180
pF1KE1 KGVWGTPGQVYDVEEVDVKDPNYDDDQENCVYETVVLPLDERAFEKTLTPIIQEYFEHGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 KGVWGTPGQVYDVEEVDVKDPNYDDDQENCVYETVVLPLDERAFEKTLTPIIQEYFEHGD
     110       120       130       140       150       160         

              190       200       210       220       230       240
pF1KE1 TNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTTDVEKSF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 TNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTTDVEKSF
     170       180       190       200       210       220         

              250       260       270       280       290       300
pF1KE1 DKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 DKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATV
     230       240       250       260       270       280         

              310       320       330       340       350       360
pF1KE1 LLSMSKGGKRKDSVWGSGGGQQSVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LLSMSKGGKRKDSVWGSGGGQQSVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFH
     290       300       310       320       330       340         

              370       380       390       400       410       420
pF1KE1 HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYERIYNEIPDINLDVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYERIYNEIPDINLDVP
     350       360       370       380       390       400         

              430       440       450       460         
pF1KE1 HSYSVLERFVEECFQAGIISKQLRDLCPSRGRKRFVSEGDGGRLKPESY
       :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 HSYSVLERFVEECFQAGIISKQLRDLCPSRGRKRFVSEGDGGRLKPESY
     410       420       430       440       450        




469 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 00:29:53 2016 done: Mon Nov  7 00:29:54 2016
 Total Scan time:  2.850 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]