FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1310, 397 aa
  1>>>pF1KE1310 397 - 397 aa - 397 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.9379+/-0.00108; mu= -8.0539+/- 0.065
 mean_var=303.8869+/-60.578, 0's: 0 Z-trim(114.1): 15  B-trim: 110 in 1/52
 Lambda= 0.073573
 statistics sampled from 14654 (14662) to 14654 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.773), E-opt: 0.2 (0.45), width:  16
 Scan time:  3.500

The best scores are:                                      opt bits E(32554)
CCDS10779.1 CX3CL1 gene_id:6376|Hs108|chr16        ( 397) 2695 299.2 4.3e-81


>>CCDS10779.1 CX3CL1 gene_id:6376|Hs108|chr16             (397 aa)
 initn: 2695 init1: 2695 opt: 2695  Z-score: 1569.3  bits: 299.2 E(32554): 4.3e-81
Smith-Waterman score: 2695; 100.0% identity (100.0% similar) in 397 aa overlap (1-397:1-397)

               10        20        30        40        50        60
pF1KE1 MAPISLSWLLRLATFCHLTVLLAGQHHGVTKCNITCSKMTSKIPVALLIHYQQNQASCGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MAPISLSWLLRLATFCHLTVLLAGQHHGVTKCNITCSKMTSKIPVALLIHYQQNQASCGK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 RAIILETRQHRLFCADPKEQWVKDAMQHLDRQAAALTRNGGTFEKQIGEVKPRTTPAAGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 RAIILETRQHRLFCADPKEQWVKDAMQHLDRQAAALTRNGGTFEKQIGEVKPRTTPAAGG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 MDESVVLEPEATGESSSLEPTPSSQEAQRALGTSPELPTGVTGSSGTRLPPTPKAQDGGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MDESVVLEPEATGESSSLEPTPSSQEAQRALGTSPELPTGVTGSSGTRLPPTPKAQDGGP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 VGTELFRVPPVSTAATWQSSAPHQPGPSLWAEAKTSEAPSTQDPSTQASTASSPAPEENA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 VGTELFRVPPVSTAATWQSSAPHQPGPSLWAEAKTSEAPSTQDPSTQASTASSPAPEENA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 PSEGQRVWGQGQSPRPENSLEREEMGPVPAHTDAFQDWGPGSMAHVSVVPVSSEGTPSRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 PSEGQRVWGQGQSPRPENSLEREEMGPVPAHTDAFQDWGPGSMAHVSVVPVSSEGTPSRE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 PVASGSWTPKAEEPIHATMDPQRLGVLITPVPDAQAATRRQAVGLLAFLGLLFCLGVAMF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 PVASGSWTPKAEEPIHATMDPQRLGVLITPVPDAQAATRRQAVGLLAFLGLLFCLGVAMF
              310       320       330       340       350       360

              370       380       390       
pF1KE1 TYQSLQGCPRKMAGEMAEGLRYIPRSCGSNSYVLVPV
       :::::::::::::::::::::::::::::::::::::
CCDS10 TYQSLQGCPRKMAGEMAEGLRYIPRSCGSNSYVLVPV
              370       380       390       




397 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 01:13:16 2016 done: Mon Nov  7 01:13:16 2016
 Total Scan time:  3.500 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]