Result of FASTA (ccds) for
pFN21AE1307
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1307, 472 aa
1>>>pF1KE1307 472 - 472 aa - 472 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.3831+/-0.000781; mu= 17.4396+/- 0.047
mean_var=68.4953+/-13.721, 0's: 0 Z-trim(108.6): 10 B-trim: 80 in 2/50
Lambda= 0.154969
statistics sampled from 10338 (10344) to 10338 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.697), E-opt: 0.2 (0.318), width: 16
Scan time: 2.100
The best scores are: opt bits E(32554)
CCDS995.1 SELENBP1 gene_id:8991|Hs108|chr1 ( 472) 3284 743.2 1.4e-214
CCDS60266.1 SELENBP1 gene_id:8991|Hs108|chr1 ( 514) 3277 741.6 4.5e-214
CCDS58027.1 SELENBP1 gene_id:8991|Hs108|chr1 ( 410) 2475 562.3 3.5e-160
>>CCDS995.1 SELENBP1 gene_id:8991|Hs108|chr1 (472 aa)
initn: 3284 init1: 3284 opt: 3284 Z-score: 3965.8 bits: 743.2 E(32554): 1.4e-214
Smith-Waterman score: 3284; 100.0% identity (100.0% similar) in 472 aa overlap (1-472:1-472)
10 20 30 40 50 60
pF1KE1 MATKCGNCGPGYSTPLEAMKGPREEIVYLPCIYRNTGTEAPDYLATVDVDPKSPQYCQVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 MATKCGNCGPGYSTPLEAMKGPREEIVYLPCIYRNTGTEAPDYLATVDVDPKSPQYCQVI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 HRLPMPNLKDELHHSGWNTCSSCFGDSTKSRTKLVLPSLISSRIYVVDVGSEPRAPKLHK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 HRLPMPNLKDELHHSGWNTCSSCFGDSTKSRTKLVLPSLISSRIYVVDVGSEPRAPKLHK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 VIEPKDIHAKCELAFLHTSHCLASGEVMISSLGDVKGNGKGGFVLLDGETFEVKGTWERP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 VIEPKDIHAKCELAFLHTSHCLASGEVMISSLGDVKGNGKGGFVLLDGETFEVKGTWERP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 GGAAPLGYDFWYQPRHNVMISTEWAAPNVLRDGFNPADVEAGLYGSHLYVWDWQRHEIVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 GGAAPLGYDFWYQPRHNVMISTEWAAPNVLRDGFNPADVEAGLYGSHLYVWDWQRHEIVQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 TLSLKDGLIPLEIRFLHNPDAAQGFVGCALSSTIQRFYKNEGGTWSVEKVIQVPPKKVKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 TLSLKDGLIPLEIRFLHNPDAAQGFVGCALSSTIQRFYKNEGGTWSVEKVIQVPPKKVKG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 WLLPEMPGLITDILLSLDDRFLYFSNWLHGDLRQYDISDPQRPRLTGQLFLGGSIVKGGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 WLLPEMPGLITDILLSLDDRFLYFSNWLHGDLRQYDISDPQRPRLTGQLFLGGSIVKGGP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE1 VQVLEDEELKSQPEPLVVKGKRVAGGPQMIQLSLDGKRLYITTSLYSAWDKQFYPDLIRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 VQVLEDEELKSQPEPLVVKGKRVAGGPQMIQLSLDGKRLYITTSLYSAWDKQFYPDLIRE
370 380 390 400 410 420
430 440 450 460 470
pF1KE1 GSVMLQVDVDTVKGGLKLNPNFLVDFGKEPLGPALAHELRYPGGDCSSDIWI
::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 GSVMLQVDVDTVKGGLKLNPNFLVDFGKEPLGPALAHELRYPGGDCSSDIWI
430 440 450 460 470
>>CCDS60266.1 SELENBP1 gene_id:8991|Hs108|chr1 (514 aa)
initn: 3277 init1: 3277 opt: 3277 Z-score: 3956.8 bits: 741.6 E(32554): 4.5e-214
Smith-Waterman score: 3277; 100.0% identity (100.0% similar) in 471 aa overlap (2-472:44-514)
10 20 30
pF1KE1 MATKCGNCGPGYSTPLEAMKGPREEIVYLPC
::::::::::::::::::::::::::::::
CCDS60 WPAGMCAAERAEGAFTLQSVAQPMRPIASTATKCGNCGPGYSTPLEAMKGPREEIVYLPC
20 30 40 50 60 70
40 50 60 70 80 90
pF1KE1 IYRNTGTEAPDYLATVDVDPKSPQYCQVIHRLPMPNLKDELHHSGWNTCSSCFGDSTKSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 IYRNTGTEAPDYLATVDVDPKSPQYCQVIHRLPMPNLKDELHHSGWNTCSSCFGDSTKSR
80 90 100 110 120 130
100 110 120 130 140 150
pF1KE1 TKLVLPSLISSRIYVVDVGSEPRAPKLHKVIEPKDIHAKCELAFLHTSHCLASGEVMISS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 TKLVLPSLISSRIYVVDVGSEPRAPKLHKVIEPKDIHAKCELAFLHTSHCLASGEVMISS
140 150 160 170 180 190
160 170 180 190 200 210
pF1KE1 LGDVKGNGKGGFVLLDGETFEVKGTWERPGGAAPLGYDFWYQPRHNVMISTEWAAPNVLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 LGDVKGNGKGGFVLLDGETFEVKGTWERPGGAAPLGYDFWYQPRHNVMISTEWAAPNVLR
200 210 220 230 240 250
220 230 240 250 260 270
pF1KE1 DGFNPADVEAGLYGSHLYVWDWQRHEIVQTLSLKDGLIPLEIRFLHNPDAAQGFVGCALS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 DGFNPADVEAGLYGSHLYVWDWQRHEIVQTLSLKDGLIPLEIRFLHNPDAAQGFVGCALS
260 270 280 290 300 310
280 290 300 310 320 330
pF1KE1 STIQRFYKNEGGTWSVEKVIQVPPKKVKGWLLPEMPGLITDILLSLDDRFLYFSNWLHGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 STIQRFYKNEGGTWSVEKVIQVPPKKVKGWLLPEMPGLITDILLSLDDRFLYFSNWLHGD
320 330 340 350 360 370
340 350 360 370 380 390
pF1KE1 LRQYDISDPQRPRLTGQLFLGGSIVKGGPVQVLEDEELKSQPEPLVVKGKRVAGGPQMIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 LRQYDISDPQRPRLTGQLFLGGSIVKGGPVQVLEDEELKSQPEPLVVKGKRVAGGPQMIQ
380 390 400 410 420 430
400 410 420 430 440 450
pF1KE1 LSLDGKRLYITTSLYSAWDKQFYPDLIREGSVMLQVDVDTVKGGLKLNPNFLVDFGKEPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 LSLDGKRLYITTSLYSAWDKQFYPDLIREGSVMLQVDVDTVKGGLKLNPNFLVDFGKEPL
440 450 460 470 480 490
460 470
pF1KE1 GPALAHELRYPGGDCSSDIWI
:::::::::::::::::::::
CCDS60 GPALAHELRYPGGDCSSDIWI
500 510
>>CCDS58027.1 SELENBP1 gene_id:8991|Hs108|chr1 (410 aa)
initn: 2475 init1: 2475 opt: 2475 Z-score: 2989.2 bits: 562.3 E(32554): 3.5e-160
Smith-Waterman score: 2724; 86.9% identity (86.9% similar) in 472 aa overlap (1-472:1-410)
10 20 30 40 50 60
pF1KE1 MATKCGNCGPGYSTPLEAMKGPREEIVYLPCIYRNTGTEAPDYLATVDVDPKSPQYCQVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MATKCGNCGPGYSTPLEAMKGPREEIVYLPCIYRNTGTEAPDYLATVDVDPKSPQYCQVI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 HRLPMPNLKDELHHSGWNTCSSCFGDSTKSRTKLVLPSLISSRIYVVDVGSEPRAPKLHK
CCDS58 ------------------------------------------------------------
130 140 150 160 170 180
pF1KE1 VIEPKDIHAKCELAFLHTSHCLASGEVMISSLGDVKGNGKGGFVLLDGETFEVKGTWERP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 --EPKDIHAKCELAFLHTSHCLASGEVMISSLGDVKGNGKGGFVLLDGETFEVKGTWERP
70 80 90 100 110
190 200 210 220 230 240
pF1KE1 GGAAPLGYDFWYQPRHNVMISTEWAAPNVLRDGFNPADVEAGLYGSHLYVWDWQRHEIVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 GGAAPLGYDFWYQPRHNVMISTEWAAPNVLRDGFNPADVEAGLYGSHLYVWDWQRHEIVQ
120 130 140 150 160 170
250 260 270 280 290 300
pF1KE1 TLSLKDGLIPLEIRFLHNPDAAQGFVGCALSSTIQRFYKNEGGTWSVEKVIQVPPKKVKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 TLSLKDGLIPLEIRFLHNPDAAQGFVGCALSSTIQRFYKNEGGTWSVEKVIQVPPKKVKG
180 190 200 210 220 230
310 320 330 340 350 360
pF1KE1 WLLPEMPGLITDILLSLDDRFLYFSNWLHGDLRQYDISDPQRPRLTGQLFLGGSIVKGGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 WLLPEMPGLITDILLSLDDRFLYFSNWLHGDLRQYDISDPQRPRLTGQLFLGGSIVKGGP
240 250 260 270 280 290
370 380 390 400 410 420
pF1KE1 VQVLEDEELKSQPEPLVVKGKRVAGGPQMIQLSLDGKRLYITTSLYSAWDKQFYPDLIRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 VQVLEDEELKSQPEPLVVKGKRVAGGPQMIQLSLDGKRLYITTSLYSAWDKQFYPDLIRE
300 310 320 330 340 350
430 440 450 460 470
pF1KE1 GSVMLQVDVDTVKGGLKLNPNFLVDFGKEPLGPALAHELRYPGGDCSSDIWI
::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 GSVMLQVDVDTVKGGLKLNPNFLVDFGKEPLGPALAHELRYPGGDCSSDIWI
360 370 380 390 400 410
472 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 02:04:47 2016 done: Mon Nov 7 02:04:47 2016
Total Scan time: 2.100 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]