Result of FASTA (omim) for
pFN21AE1297
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1297, 126 aa
1>>>pF1KE1297 126 - 126 aa - 126 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.4462+/-0.000315; mu= 10.9783+/- 0.020
mean_var=74.9330+/-14.751, 0's: 0 Z-trim(117.4): 29 B-trim: 761 in 2/56
Lambda= 0.148162
statistics sampled from 29308 (29339) to 29308 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.715), E-opt: 0.2 (0.344), width: 16
Scan time: 4.930
The best scores are: opt bits E(85289)
NP_542160 (OMIM: 615045) histone H2B type 1-K [Hom ( 126) 787 176.6 9.5e-45
NP_001299582 (OMIM: 615045) histone H2B type 1-K [ ( 126) 787 176.6 9.5e-45
NP_066402 (OMIM: 615044) histone H2B type 1-J [Hom ( 126) 786 176.4 1.1e-44
NP_003509 (OMIM: 602798) histone H2B type 1-C/E/F/ ( 126) 783 175.7 1.7e-44
NP_003514 (OMIM: 602805) histone H2B type 1-C/E/F/ ( 126) 783 175.7 1.7e-44
NP_003516 (OMIM: 602807) histone H2B type 1-C/E/F/ ( 126) 783 175.7 1.7e-44
NP_003517 (OMIM: 602847) histone H2B type 1-C/E/F/ ( 126) 783 175.7 1.7e-44
NP_003513 (OMIM: 602804) histone H2B type 1-C/E/F/ ( 126) 783 175.7 1.7e-44
NP_003519 (OMIM: 601831) histone H2B type 2-E [Hom ( 126) 782 175.5 2e-44
NP_003515 (OMIM: 602806) histone H2B type 1-H [Hom ( 126) 779 174.9 3.1e-44
NP_003511 (OMIM: 602801) histone H2B type 1-N [Hom ( 126) 779 174.9 3.1e-44
NP_066407 (OMIM: 602799) histone H2B type 1-D [Hom ( 126) 778 174.6 3.6e-44
NP_619790 (OMIM: 602799) histone H2B type 1-D [Hom ( 126) 778 174.6 3.6e-44
NP_003518 (OMIM: 602808) histone H2B type 1-O [Hom ( 126) 778 174.6 3.6e-44
XP_005249096 (OMIM: 602799) PREDICTED: histone H2B ( 150) 778 174.7 4.1e-44
NP_066406 (OMIM: 602803) histone H2B type 1-B [Hom ( 126) 777 174.4 4.2e-44
NP_003512 (OMIM: 602802) histone H2B type 1-M [Hom ( 126) 767 172.3 1.8e-43
NP_003510 (OMIM: 602800) histone H2B type 1-L [Hom ( 126) 761 171.0 4.5e-43
NP_778225 (OMIM: 615046) histone H2B type 3-B [Hom ( 126) 760 170.8 5.2e-43
NP_733759 (OMIM: 609904) histone H2B type 1-A [Hom ( 127) 662 149.9 1.1e-36
NP_001002916 (OMIM: 300507) histone H2B type W-T [ ( 175) 302 73.0 2e-13
>>NP_542160 (OMIM: 615045) histone H2B type 1-K [Homo sa (126 aa)
initn: 787 init1: 787 opt: 787 Z-score: 924.4 bits: 176.6 E(85289): 9.5e-45
Smith-Waterman score: 787; 100.0% identity (100.0% similar) in 126 aa overlap (1-126:1-126)
10 20 30 40 50 60
pF1KE1 MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_542 MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_542 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
70 80 90 100 110 120
pF1KE1 KYTSAK
::::::
NP_542 KYTSAK
>>NP_001299582 (OMIM: 615045) histone H2B type 1-K [Homo (126 aa)
initn: 787 init1: 787 opt: 787 Z-score: 924.4 bits: 176.6 E(85289): 9.5e-45
Smith-Waterman score: 787; 100.0% identity (100.0% similar) in 126 aa overlap (1-126:1-126)
10 20 30 40 50 60
pF1KE1 MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
70 80 90 100 110 120
pF1KE1 KYTSAK
::::::
NP_001 KYTSAK
>>NP_066402 (OMIM: 615044) histone H2B type 1-J [Homo sa (126 aa)
initn: 786 init1: 786 opt: 786 Z-score: 923.2 bits: 176.4 E(85289): 1.1e-44
Smith-Waterman score: 786; 99.2% identity (100.0% similar) in 126 aa overlap (1-126:1-126)
10 20 30 40 50 60
pF1KE1 MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM
:::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::
NP_066 MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSIYVYKVLKQVHPDTGISSKAM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
70 80 90 100 110 120
pF1KE1 KYTSAK
::::::
NP_066 KYTSAK
>>NP_003509 (OMIM: 602798) histone H2B type 1-C/E/F/G/I (126 aa)
initn: 829 init1: 783 opt: 783 Z-score: 919.7 bits: 175.7 E(85289): 1.7e-44
Smith-Waterman score: 783; 99.2% identity (100.0% similar) in 126 aa overlap (1-126:1-126)
10 20 30 40 50 60
pF1KE1 MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
70 80 90 100 110 120
pF1KE1 KYTSAK
::::.:
NP_003 KYTSSK
>>NP_003514 (OMIM: 602805) histone H2B type 1-C/E/F/G/I (126 aa)
initn: 829 init1: 783 opt: 783 Z-score: 919.7 bits: 175.7 E(85289): 1.7e-44
Smith-Waterman score: 783; 99.2% identity (100.0% similar) in 126 aa overlap (1-126:1-126)
10 20 30 40 50 60
pF1KE1 MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
70 80 90 100 110 120
pF1KE1 KYTSAK
::::.:
NP_003 KYTSSK
>>NP_003516 (OMIM: 602807) histone H2B type 1-C/E/F/G/I (126 aa)
initn: 829 init1: 783 opt: 783 Z-score: 919.7 bits: 175.7 E(85289): 1.7e-44
Smith-Waterman score: 783; 99.2% identity (100.0% similar) in 126 aa overlap (1-126:1-126)
10 20 30 40 50 60
pF1KE1 MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
70 80 90 100 110 120
pF1KE1 KYTSAK
::::.:
NP_003 KYTSSK
>>NP_003517 (OMIM: 602847) histone H2B type 1-C/E/F/G/I (126 aa)
initn: 829 init1: 783 opt: 783 Z-score: 919.7 bits: 175.7 E(85289): 1.7e-44
Smith-Waterman score: 783; 99.2% identity (100.0% similar) in 126 aa overlap (1-126:1-126)
10 20 30 40 50 60
pF1KE1 MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
70 80 90 100 110 120
pF1KE1 KYTSAK
::::.:
NP_003 KYTSSK
>>NP_003513 (OMIM: 602804) histone H2B type 1-C/E/F/G/I (126 aa)
initn: 829 init1: 783 opt: 783 Z-score: 919.7 bits: 175.7 E(85289): 1.7e-44
Smith-Waterman score: 783; 99.2% identity (100.0% similar) in 126 aa overlap (1-126:1-126)
10 20 30 40 50 60
pF1KE1 MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
70 80 90 100 110 120
pF1KE1 KYTSAK
::::.:
NP_003 KYTSSK
>>NP_003519 (OMIM: 601831) histone H2B type 2-E [Homo sa (126 aa)
initn: 849 init1: 782 opt: 782 Z-score: 918.6 bits: 175.5 E(85289): 2e-44
Smith-Waterman score: 782; 98.4% identity (100.0% similar) in 126 aa overlap (1-126:1-126)
10 20 30 40 50 60
pF1KE1 MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM
:::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::
NP_003 MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSIYVYKVLKQVHPDTGISSKAM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
70 80 90 100 110 120
pF1KE1 KYTSAK
::::.:
NP_003 KYTSSK
>>NP_003515 (OMIM: 602806) histone H2B type 1-H [Homo sa (126 aa)
initn: 825 init1: 779 opt: 779 Z-score: 915.1 bits: 174.9 E(85289): 3.1e-44
Smith-Waterman score: 779; 98.4% identity (100.0% similar) in 126 aa overlap (1-126:1-126)
10 20 30 40 50 60
pF1KE1 MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM
::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MPDPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
70 80 90 100 110 120
pF1KE1 KYTSAK
::::.:
NP_003 KYTSSK
126 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 03:56:04 2016 done: Mon Nov 7 03:56:05 2016
Total Scan time: 4.930 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]