FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1289, 929 aa
  1>>>pF1KE1289 929 - 929 aa - 929 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 14.1994+/-0.00105; mu= -17.2500+/- 0.064
 mean_var=490.4993+/-98.459, 0's: 0 Z-trim(117.1): 30  B-trim: 0 in 0/56
 Lambda= 0.057910
 statistics sampled from 17732 (17756) to 17732 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.805), E-opt: 0.2 (0.545), width:  16
 Scan time:  5.920

The best scores are:                                      opt bits E(32554)
CCDS41487.1 TAF3 gene_id:83860|Hs108|chr10         ( 929) 6223 534.7 3.1e-151


>>CCDS41487.1 TAF3 gene_id:83860|Hs108|chr10              (929 aa)
 initn: 6223 init1: 6223 opt: 6223  Z-score: 2828.5  bits: 534.7 E(32554): 3.1e-151
Smith-Waterman score: 6223; 99.8% identity (99.9% similar) in 929 aa overlap (1-929:1-929)

               10        20        30        40        50        60
pF1KE1 MCESYSRSLLRVSVAQICQALGWDSVQLSACHLLTDVLQRYLQQLGRGCHRYSELYGRTD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MCESYSRSLLRVSVAQICQALGWDSVQLSACHLLTDVLQRYLQQLGRGCHRYSELYGRTD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 PILDDVGEAFQLMGVSLHELEDYIHNIEPVTFPHQIPSFPVSKNNVLQFPQPGSKDAEER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 PILDDVGEAFQLMGVSLHELEDYIHNIEPVTFPHQIPSFPVSKNNVLQFPQPGSKDAEER
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 KEYIPDYLPPIVSSQEEEEEEQVPTDGGTSAEAMQVPLEEDDELEEEEIINDENFLGKRP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 KEYIPDYLPPIVSSQEEEEEEQVPTDGGTSAEAMQVPLEEDDELEEEEIINDENFLGKRP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 LDSPEAEELPAMKRPRLLSTKGDTLDVVLLEAREPLSSINTQKIPPMLSPVHVQDSTDLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 LDSPEAEELPAMKRPRLLSTKGDTLDVVLLEAREPLSSINTQKIPPMLSPVHVQDSTDLA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 PPSPEPPMLAPVAKSQMPTAKPLETKSFTPKTKTKTSSPGQKTKSPKTAQSPAMVGSPIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 PPSPEPPMLAPVAKSQMPTAKPLETKSFTPKTKTKTSSPGQKTKSPKTAQSPAMVGSPIR
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 SPKTVSKEKKSPGRSKSPKSPKSPKVTTHIPQTPVRPETPNRTPSATLSEKISKETIQVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 SPKTVSKEKKSPGRSKSPKSPKSPKVTTHIPQTPVRPETPNRTPSATLSEKISKETIQVK
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 QIQTPPDAGKLNSENQPKKAVVADKTIEASIDAVIARACAEREPDPFEFSSGSESEGDIF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 QIQTPPDAGKLNSENQPKKAVVADKTIEASIDAVIARACAEREPDPFEFSSGSESEGDIF
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE1 TSPKRISGPECTTPKASTSANSFTKSGSTPLPLSGGTSSSDNSWTMDASIDEVVRKAKLG
       :::::::::::::::::::::.::::::::::::::::::::::::::::::::::::::
CCDS41 TSPKRISGPECTTPKASTSANNFTKSGSTPLPLSGGTSSSDNSWTMDASIDEVVRKAKLG
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE1 TPSNMPPNFPYISSPSVSPPTPEPLHKVYEEKTKLPSSVEVKKKLKKELKTKMKKKEKQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 TPSNMPPNFPYISSPSVSPPTPEPLHKVYEEKTKLPSSVEVKKKLKKELKTKMKKKEKQR
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE1 DREREKDKNKDKSKEKDKVKEKEKDKETGRETKYPWKEFLKEEEADPYKFKIKEFEDVDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 DREREKDKNKDKSKEKDKVKEKEKDKETGRETKYPWKEFLKEEEADPYKFKIKEFEDVDP
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE1 KVKLKDGLVRKEKEKHKDKKKDREKGKKDKDKREKEKVKDKGREDKMKAPAPPLVLPPKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 KVKLKDGLVRKEKEKHKDKKKDREKGKKDKDKREKEKVKDKGREDKMKAPAPPLVLPPKE
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KE1 LALPLFSPATASRVPAMLPSLLPVLPEKLFEEKEKPKEKEKKKDKKEKKKKKEKEKEKKE
       ::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::
CCDS41 LALPLFSPATASRVPAMLPSLLPVLPEKLFEEKEKVKEKEKKKDKKEKKKKKEKEKEKKE
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KE1 KEREKEKREREKREKEKEKHKHEKIKVEPVALAPSPVIPRLTLRVGAGQDKIVISKVVPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 KEREKEKREREKREKEKEKHKHEKIKVEPVALAPSPVIPRLTLRVGAGQDKIVISKVVPA
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KE1 PEAKPAPSQNRPKTPPPAPAPAPGPMLVSPAPVPLPLLAQAAAGPALLPSPGPAASGASA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 PEAKPAPSQNRPKTPPPAPAPAPGPMLVSPAPVPLPLLAQAAAGPALLPSPGPAASGASA
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KE1 KAPVRSVVTETVSTYVIRDEWGNQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 KAPVRSVVTETVSTYVIRDEWGNQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMTA
              850       860       870       880       890       900

              910       920         
pF1KE1 PPEEMQWFCPKCANKKKDKKHKKRKHRAH
       :::::::::::::::::::::::::::::
CCDS41 PPEEMQWFCPKCANKKKDKKHKKRKHRAH
              910       920         




929 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 04:36:00 2016 done: Sun Nov  6 04:36:01 2016
 Total Scan time:  5.920 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]