FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1288, 902 aa
  1>>>pF1KE1288 902 - 902 aa - 902 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.1619+/-0.000927; mu= 7.6930+/- 0.056
 mean_var=130.1462+/-25.836, 0's: 0 Z-trim(109.5): 21  B-trim: 4 in 1/50
 Lambda= 0.112424
 statistics sampled from 10907 (10920) to 10907 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.692), E-opt: 0.2 (0.335), width:  16
 Scan time:  3.850

The best scores are:                                      opt bits E(32554)
CCDS677.1 ZZZ3 gene_id:26009|Hs108|chr1            ( 903) 6080 997.9       0
CCDS76172.1 ZZZ3 gene_id:26009|Hs108|chr1          ( 409) 2757 458.9 8.9e-129


>>CCDS677.1 ZZZ3 gene_id:26009|Hs108|chr1                 (903 aa)
 initn: 6078 init1: 3949 opt: 6080  Z-score: 5332.6  bits: 997.9 E(32554):    0
Smith-Waterman score: 6080; 99.9% identity (99.9% similar) in 903 aa overlap (1-902:1-903)

               10        20        30        40        50        60
pF1KE1 MAASRSTRVTRSTVGLNGLDESFCGRTLRNRSIAHPEEISSNSQVRSRSPKKRPEPVPIQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 MAASRSTRVTRSTVGLNGLDESFCGRTLRNRSIAHPEEISSNSQVRSRSPKKRPEPVPIQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 KGNNNGRTTDLKQQSTRESWVSPRKRGLSSSEKDNIERQAIENCERRQTEPVSPVLKRIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 KGNNNGRTTDLKQQSTRESWVSPRKRGLSSSEKDNIERQAIENCERRQTEPVSPVLKRIK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 RCLRSEAPNSSEEDSPIKSDKESVEQRSTVVDNDADFQGTKRACRCLILDDCEKREIKKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 RCLRSEAPNSSEEDSPIKSDKESVEQRSTVVDNDADFQGTKRACRCLILDDCEKREIKKV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 NVSEEGPLNSAVVEEITGYLAVNGVDDSDSAVINCDDCQPDGNTKQNSIGSYVLQEKSVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 NVSEEGPLNSAVVEEITGYLAVNGVDDSDSAVINCDDCQPDGNTKQNSIGSYVLQEKSVA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 ENGDTDTQTSMFLDSRKEDSYIDHKVPCTDSQVQVKLEDHKIVTACLPVEHVNQLTTEPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 ENGDTDTQTSMFLDSRKEDSYIDHKVPCTDSQVQVKLEDHKIVTACLPVEHVNQLTTEPA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 TGPFSETQSSLRDSEEEVDVVGDSSASKEQCKENTNNELDTSLESMPASGEPEPSPVLDC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 TGPFSETQSSLRDSEEEVDVVGDSSASKEQCKENTNNELDTSLESMPASGEPEPSPVLDC
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 VSAQMMSLSEPQEHRYTLRTSPRRAAPTRGSPTKNSSPYRENGQFEENNLSPNETNATVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 VSAQMMSLSEPQEHRYTLRTSPRRAAPTRGSPTKNSSPYRENGQFEENNLSPNETNATVS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE1 DNVSQSPTNPGEISQNEKGICCDSQNNGSEGVSKPPSEARLNIGHLPSAKESASQHITEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 DNVSQSPTNPGEISQNEKGICCDSQNNGSEGVSKPPSEARLNIGHLPSAKESASQHITEE
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE1 EDDDPDVYYFESDHVALKHNKDYQRLLQTIAVLEAQRSQAVQDLESLGRHQREALKNPIG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 EDDDPDVYYFESDHVALKHNKDYQRLLQTIAVLEAQRSQAVQDLESLGRHQREALKNPIG
              490       500       510       520       530       540

              550       560       570       580       590          
pF1KE1 FVEKLQKKADIGLPYPQRVVQLPEIVWDQYTHSLGNFEREFKNRKRHTRRVKLVFDK-GL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::
CCDS67 FVEKLQKKADIGLPYPQRVVQLPEIVWDQYTHSLGNFEREFKNRKRHTRRVKLVFDKVGL
              550       560       570       580       590       600

     600       610       620       630       640       650         
pF1KE1 PARPKSPLDPKKDGESLSYSMLPLSDGPEGSSSRPQMIRGRLCDDTKPETFNQLWTVEEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 PARPKSPLDPKKDGESLSYSMLPLSDGPEGSSSRPQMIRGRLCDDTKPETFNQLWTVEEQ
              610       620       630       640       650       660

     660       670       680       690       700       710         
pF1KE1 KKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASRVQKYFIKLTKAGIPVPGRTPNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 KKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASRVQKYFIKLTKAGIPVPGRTPNL
              670       680       690       700       710       720

     720       730       740       750       760       770         
pF1KE1 YIYSKKSSTSRRQHPLNKHLFKPSTFMTSHEPPVYMDEDDDRSCFHSHMNTAVEDASDDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 YIYSKKSSTSRRQHPLNKHLFKPSTFMTSHEPPVYMDEDDDRSCFHSHMNTAVEDASDDE
              730       740       750       760       770       780

     780       790       800       810       820       830         
pF1KE1 SIPIMYRNLPEYKELLQFKKLKKQKLQQMQAESGFVQHVGFKCDNCGIEPIQGVRWHCQD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 SIPIMYRNLPEYKELLQFKKLKKQKLQQMQAESGFVQHVGFKCDNCGIEPIQGVRWHCQD
              790       800       810       820       830       840

     840       850       860       870       880       890         
pF1KE1 CPPEMSLDFCDSCSDCLHETDIHKEDHQLEPIYRSETFLDRDYCVSQGTSYNYLDPNYFP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 CPPEMSLDFCDSCSDCLHETDIHKEDHQLEPIYRSETFLDRDYCVSQGTSYNYLDPNYFP
              850       860       870       880       890       900

     900  
pF1KE1 ANR
       :::
CCDS67 ANR
          

>>CCDS76172.1 ZZZ3 gene_id:26009|Hs108|chr1               (409 aa)
 initn: 2755 init1: 2143 opt: 2757  Z-score: 2425.4  bits: 458.9 E(32554): 8.9e-129
Smith-Waterman score: 2757; 99.8% identity (99.8% similar) in 401 aa overlap (503-902:9-409)

            480       490       500       510       520       530  
pF1KE1 ASQHITEEEDDDPDVYYFESDHVALKHNKDYQRLLQTIAVLEAQRSQAVQDLESLGRHQR
                                     ::::::::::::::::::::::::::::::
CCDS76                       MIDLWLYSYQRLLQTIAVLEAQRSQAVQDLESLGRHQR
                                     10        20        30        

            540       550       560       570       580       590  
pF1KE1 EALKNPIGFVEKLQKKADIGLPYPQRVVQLPEIVWDQYTHSLGNFEREFKNRKRHTRRVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 EALKNPIGFVEKLQKKADIGLPYPQRVVQLPEIVWDQYTHSLGNFEREFKNRKRHTRRVK
       40        50        60        70        80        90        

             600       610       620       630       640       650 
pF1KE1 LVFDK-GLPARPKSPLDPKKDGESLSYSMLPLSDGPEGSSSRPQMIRGRLCDDTKPETFN
       ::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 LVFDKVGLPARPKSPLDPKKDGESLSYSMLPLSDGPEGSSSRPQMIRGRLCDDTKPETFN
      100       110       120       130       140       150        

             660       670       680       690       700       710 
pF1KE1 QLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASRVQKYFIKLTKAGIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 QLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASRVQKYFIKLTKAGIP
      160       170       180       190       200       210        

             720       730       740       750       760       770 
pF1KE1 VPGRTPNLYIYSKKSSTSRRQHPLNKHLFKPSTFMTSHEPPVYMDEDDDRSCFHSHMNTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 VPGRTPNLYIYSKKSSTSRRQHPLNKHLFKPSTFMTSHEPPVYMDEDDDRSCFHSHMNTA
      220       230       240       250       260       270        

             780       790       800       810       820       830 
pF1KE1 VEDASDDESIPIMYRNLPEYKELLQFKKLKKQKLQQMQAESGFVQHVGFKCDNCGIEPIQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 VEDASDDESIPIMYRNLPEYKELLQFKKLKKQKLQQMQAESGFVQHVGFKCDNCGIEPIQ
      280       290       300       310       320       330        

             840       850       860       870       880       890 
pF1KE1 GVRWHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLEPIYRSETFLDRDYCVSQGTSYN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 GVRWHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLEPIYRSETFLDRDYCVSQGTSYN
      340       350       360       370       380       390        

             900  
pF1KE1 YLDPNYFPANR
       :::::::::::
CCDS76 YLDPNYFPANR
      400         




902 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 21:05:06 2016 done: Sun Nov  6 21:05:07 2016
 Total Scan time:  3.850 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]