FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1274, 711 aa
  1>>>pF1KE1274 711 - 711 aa - 711 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5969+/-0.00109; mu= 17.7198+/- 0.066
 mean_var=60.1942+/-11.858, 0's: 0 Z-trim(101.5): 25  B-trim: 0 in 0/49
 Lambda= 0.165309
 statistics sampled from 6535 (6540) to 6535 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.563), E-opt: 0.2 (0.201), width:  16
 Scan time:  2.560

The best scores are:                                      opt bits E(32554)
CCDS6011.2 INTS10 gene_id:55174|Hs108|chr8         ( 710) 4732 1137.6       0


>>CCDS6011.2 INTS10 gene_id:55174|Hs108|chr8              (710 aa)
 initn: 2543 init1: 2543 opt: 4732  Z-score: 6091.4  bits: 1137.6 E(32554):    0
Smith-Waterman score: 4732; 99.9% identity (99.9% similar) in 711 aa overlap (1-711:1-710)

               10        20        30        40        50        60
pF1KE1 MSAQGDCEFLVQRARELVPQDLWAAKAWLITARSLYPADFNIQYEMYTIERNAERTATAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 MSAQGDCEFLVQRARELVPQDLWAAKAWLITARSLYPADFNIQYEMYTIERNAERTATAG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 RLLYDMFVNFPDQPVVWREISIITSALRNDSQDKQTQFLRSLFETLPGRVQCEMLLKVTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 RLLYDMFVNFPDQPVVWREISIITSALRNDSQDKQTQFLRSLFETLPGRVQCEMLLKVTE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 QCFNTLERSEMLLLLLRRFPETVVQHGVGLGEALLEAETIEEQESPVNCFRKLFVCDVLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 QCFNTLERSEMLLLLLRRFPETVVQHGVGLGEALLEAETIEEQESPVNCFRKLFVCDVLP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 LIINNHDVRLPANLLYKYLNKAAEFYINYVTRSTQIENQHQGAQDTSDLMSPSKRSSQKY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 LIINNHDVRLPANLLYKYLNKAAEFYINYVTRSTQIENQHQGAQDTSDLMSPSKRSSQKY
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 IIEGLTEKSSQIVDPWERLFKILNVVGMRCEWQMDKGRRSYGDILHRMKDLCRYMNNFDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 IIEGLTEKSSQIVDPWERLFKILNVVGMRCEWQMDKGRRSYGDILHRMKDLCRYMNNFDS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 EAHAKYKNQVVYSTMLVFFKNAFQYVNSIQPSLFQGPNAPSQVPLVLLEDVSNVYGDVEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 EAHAKYKNQVVYSTMLVFFKNAFQYVNSIQPSLFQGPNAPSQVPLVLLEDVSNVYGDVEI
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 DRNKHIHKKRKLAEGREKTMQSSDDEDCSAKGRNRHIVVNKAELANSTEVLESFKLARES
       :::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::
CCDS60 DRNKHIHKKRKLAEGREKTM-SSDDEDCSAKGRNRHIVVNKAELANSTEVLESFKLARES
              370       380        390       400       410         

              430       440       450       460       470       480
pF1KE1 WELLYSLEFLDKEFTRICLAWKTDTWLWLRIFLTDMIIYQGQYKKAIASLHHLAALQGSI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 WELLYSLEFLDKEFTRICLAWKTDTWLWLRIFLTDMIIYQGQYKKAIASLHHLAALQGSI
     420       430       440       450       460       470         

              490       500       510       520       530       540
pF1KE1 SQPQITGQGTLEHQRALIQLATCHFALGEYRMTCEKVLDLMCYMVLPIQDGGKSQEEPSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 SQPQITGQGTLEHQRALIQLATCHFALGEYRMTCEKVLDLMCYMVLPIQDGGKSQEEPSK
     480       490       500       510       520       530         

              550       560       570       580       590       600
pF1KE1 VKPKFRKGSDLKLLPCTSKAIMPYCLHLMLACFKLRAFTDNRDDMALGHVIVLLQQEWPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 VKPKFRKGSDLKLLPCTSKAIMPYCLHLMLACFKLRAFTDNRDDMALGHVIVLLQQEWPR
     540       550       560       570       580       590         

              610       620       630       640       650       660
pF1KE1 GENLFLKAVNKICQQGNFQYENFFNYVTNIDMLEEFAYLRTQEGGKIHLELLPNQGMLIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 GENLFLKAVNKICQQGNFQYENFFNYVTNIDMLEEFAYLRTQEGGKIHLELLPNQGMLIK
     600       610       620       630       640       650         

              670       680       690       700       710 
pF1KE1 HHTVTRGITKGVKEDFRLAMERQVSRCGENLMVVLHRFCINEKILLLQTLT
       :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 HHTVTRGITKGVKEDFRLAMERQVSRCGENLMVVLHRFCINEKILLLQTLT
     660       670       680       690       700       710




711 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 21:41:23 2016 done: Sun Nov  6 21:41:24 2016
 Total Scan time:  2.560 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]