FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1273, 696 aa
  1>>>pF1KE1273     696 - 696 aa - 696 aa
Library: human.CCDS.faa
  18921897 residues in 33420 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 13.8503+/-0.00126; mu= -18.7343+/- 0.075
 mean_var=488.1949+/-101.903, 0's: 0 Z-trim(112.5): 74  B-trim: 560 in 1/52
 Lambda= 0.058047
 statistics sampled from 13350 (13403) to 13350 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.7), E-opt: 0.2 (0.401), width:  16
 Scan time:  1.990

The best scores are:                                      opt bits E(33420)
CCDS3204.1 GOLIM4 gene_id:27333|Hs109|chr3         ( 696) 4608 400.9 3.3e-111
CCDS77854.1 GOLIM4 gene_id:27333|Hs109|chr3        ( 668) 3225 285.1 2.4e-76


>>CCDS3204.1 GOLIM4 gene_id:27333|Hs109|chr3              (696 aa)
 initn: 4608 init1: 4608 opt: 4608  Z-score: 2110.1  bits: 400.9 E(33420): 3.3e-111
Smith-Waterman score: 4608; 100.0% identity (100.0% similar) in 696 aa overlap (1-696:1-696)

               10        20        30        40        50        60
pF1KE1 MGNGMCSRKQKRIFQTLLLLTVVFGFLYGAMLYYELQTQLRKAEAVALKYQQHQESLSAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MGNGMCSRKQKRIFQTLLLLTVVFGFLYGAMLYYELQTQLRKAEAVALKYQQHQESLSAQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 LQVVYEHRSRLEKSLQKERLEHKKAKEDFLVYKLEAQETLNKGRQDSNSRYSALNVQHQM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LQVVYEHRSRLEKSLQKERLEHKKAKEDFLVYKLEAQETLNKGRQDSNSRYSALNVQHQM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 LKSQHEELKKQHSDLEEEHRKQGEDFSRTFNDHKQKYLQLQQEKEQELSKLKETVYNLRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LKSQHEELKKQHSDLEEEHRKQGEDFSRTFNDHKQKYLQLQQEKEQELSKLKETVYNLRE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 ENRQLRKAHQDIHTQLQDVKQQHKNLLSEHEQLVVTLEDHKSALAAAQTQVAEYKQLKDT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 ENRQLRKAHQDIHTQLQDVKQQHKNLLSEHEQLVVTLEDHKSALAAAQTQVAEYKQLKDT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 LNRIPSLRKPDPAEQQNVTQVAHSPQGYNTAREKPTREVQEVSRNNDVWQNHEAVPGRAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LNRIPSLRKPDPAEQQNVTQVAHSPQGYNTAREKPTREVQEVSRNNDVWQNHEAVPGRAE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 DTKLYAPTHKEAEFQAPPEPIQQEVERREPEEHQVEEEHRKALEEEEMEQVGQAEHLEEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 DTKLYAPTHKEAEFQAPPEPIQQEVERREPEEHQVEEEHRKALEEEEMEQVGQAEHLEEE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 HDPSPEEQDREWKEQHEQREAANLLEGHARAEVYPSAKPMIKFQSPYEEQLEQQRLAVQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 HDPSPEEQDREWKEQHEQREAANLLEGHARAEVYPSAKPMIKFQSPYEEQLEQQRLAVQQ
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE1 VEEAQQLREHQEALHQQRLQGHLLRQQEQQQQQVAREMALQRQAELEEGRPQHQEQLRQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 VEEAQQLREHQEALHQQRLQGHLLRQQEQQQQQVAREMALQRQAELEEGRPQHQEQLRQQ
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE1 AHYDAMDNDIVQGAEDQGIQGEEGAYERDNQHQDEAEGDPGNRHEPREQGPREADPESEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 AHYDAMDNDIVQGAEDQGIQGEEGAYERDNQHQDEAEGDPGNRHEPREQGPREADPESEA
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE1 DRAAVEDINPADDPNNQGEDEFEEAEQVREENLPDENEEQKQSNQKQENTEVEEHLVMAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 DRAAVEDINPADDPNNQGEDEFEEAEQVREENLPDENEEQKQSNQKQENTEVEEHLVMAG
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE1 NPDQQEDNVDEQYQEEAEEEVQEDLTEEKKRELEHNAEETYGENDENTDDKNNDGEEQEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 NPDQQEDNVDEQYQEEAEEEVQEDLTEEKKRELEHNAEETYGENDENTDDKNNDGEEQEV
              610       620       630       640       650       660

              670       680       690      
pF1KE1 RDDNRPKGREEHYEEEEEEEEDGAAVAEKSHRRAEM
       ::::::::::::::::::::::::::::::::::::
CCDS32 RDDNRPKGREEHYEEEEEEEEDGAAVAEKSHRRAEM
              670       680       690      

>>CCDS77854.1 GOLIM4 gene_id:27333|Hs109|chr3             (668 aa)
 initn: 3178 init1: 3178 opt: 3225  Z-score: 1484.4  bits: 285.1 E(33420): 2.4e-76
Smith-Waterman score: 4369; 96.0% identity (96.0% similar) in 696 aa overlap (1-696:1-668)

               10        20        30        40        50        60
pF1KE1 MGNGMCSRKQKRIFQTLLLLTVVFGFLYGAMLYYELQTQLRKAEAVALKYQQHQESLSAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 MGNGMCSRKQKRIFQTLLLLTVVFGFLYGAMLYYELQTQLRKAEAVALKYQQHQESLSAQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 LQVVYEHRSRLEKSLQKERLEHKKAKEDFLVYKLEAQETLNKGRQDSNSRYSALNVQHQM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 LQVVYEHRSRLEKSLQKERLEHKKAKEDFLVYKLEAQETLNKGRQDSNSRYSALNVQHQM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 LKSQHEELKKQHSDLEEEHRKQGEDFSRTFNDHKQKYLQLQQEKEQELSKLKETVYNLRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 LKSQHEELKKQHSDLEEEHRKQGEDFSRTFNDHKQKYLQLQQEKEQELSKLKETVYNLRE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 ENRQLRKAHQDIHTQLQDVKQQHKNLLSEHEQLVVTLEDHKSALAAAQTQVAEYKQLKDT
       ::::::::::::::::::::                            ::::::::::::
CCDS77 ENRQLRKAHQDIHTQLQDVK----------------------------TQVAEYKQLKDT
              190       200                                   210  

              250       260       270       280       290       300
pF1KE1 LNRIPSLRKPDPAEQQNVTQVAHSPQGYNTAREKPTREVQEVSRNNDVWQNHEAVPGRAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 LNRIPSLRKPDPAEQQNVTQVAHSPQGYNTAREKPTREVQEVSRNNDVWQNHEAVPGRAE
            220       230       240       250       260       270  

              310       320       330       340       350       360
pF1KE1 DTKLYAPTHKEAEFQAPPEPIQQEVERREPEEHQVEEEHRKALEEEEMEQVGQAEHLEEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 DTKLYAPTHKEAEFQAPPEPIQQEVERREPEEHQVEEEHRKALEEEEMEQVGQAEHLEEE
            280       290       300       310       320       330  

              370       380       390       400       410       420
pF1KE1 HDPSPEEQDREWKEQHEQREAANLLEGHARAEVYPSAKPMIKFQSPYEEQLEQQRLAVQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 HDPSPEEQDREWKEQHEQREAANLLEGHARAEVYPSAKPMIKFQSPYEEQLEQQRLAVQQ
            340       350       360       370       380       390  

              430       440       450       460       470       480
pF1KE1 VEEAQQLREHQEALHQQRLQGHLLRQQEQQQQQVAREMALQRQAELEEGRPQHQEQLRQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 VEEAQQLREHQEALHQQRLQGHLLRQQEQQQQQVAREMALQRQAELEEGRPQHQEQLRQQ
            400       410       420       430       440       450  

              490       500       510       520       530       540
pF1KE1 AHYDAMDNDIVQGAEDQGIQGEEGAYERDNQHQDEAEGDPGNRHEPREQGPREADPESEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 AHYDAMDNDIVQGAEDQGIQGEEGAYERDNQHQDEAEGDPGNRHEPREQGPREADPESEA
            460       470       480       490       500       510  

              550       560       570       580       590       600
pF1KE1 DRAAVEDINPADDPNNQGEDEFEEAEQVREENLPDENEEQKQSNQKQENTEVEEHLVMAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 DRAAVEDINPADDPNNQGEDEFEEAEQVREENLPDENEEQKQSNQKQENTEVEEHLVMAG
            520       530       540       550       560       570  

              610       620       630       640       650       660
pF1KE1 NPDQQEDNVDEQYQEEAEEEVQEDLTEEKKRELEHNAEETYGENDENTDDKNNDGEEQEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 NPDQQEDNVDEQYQEEAEEEVQEDLTEEKKRELEHNAEETYGENDENTDDKNNDGEEQEV
            580       590       600       610       620       630  

              670       680       690      
pF1KE1 RDDNRPKGREEHYEEEEEEEEDGAAVAEKSHRRAEM
       ::::::::::::::::::::::::::::::::::::
CCDS77 RDDNRPKGREEHYEEEEEEEEDGAAVAEKSHRRAEM
            640       650       660        




696 residues in 1 query   sequences
18921897 residues in 33420 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Jun 21 11:07:55 2019 done: Fri Jun 21 11:07:55 2019
 Total Scan time:  1.990 Total Display time:  0.040

Function used was FASTA [36.3.4 Apr, 2011]