FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1260, 595 aa
  1>>>pF1KE1260 595 - 595 aa - 595 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 11.2485+/-0.00103; mu= -3.9246+/- 0.062
 mean_var=459.1022+/-95.303, 0's: 0 Z-trim(117.3): 783  B-trim: 1040 in 1/53
 Lambda= 0.059858
 statistics sampled from 17178 (18052) to 17178 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.81), E-opt: 0.2 (0.555), width:  16
 Scan time:  3.810

The best scores are:                                      opt bits E(32554)
CCDS47259.1 PRDM6 gene_id:93166|Hs108|chr5         ( 595) 4210 377.8 2.1e-104


>>CCDS47259.1 PRDM6 gene_id:93166|Hs108|chr5              (595 aa)
 initn: 4210 init1: 4210 opt: 4210  Z-score: 1987.7  bits: 377.8 E(32554): 2.1e-104
Smith-Waterman score: 4210; 100.0% identity (100.0% similar) in 595 aa overlap (1-595:1-595)

               10        20        30        40        50        60
pF1KE1 MLKPGDPGGSAFLKVDPAYLQHWQQLFPHGGAGPLKGSGAAGLLSAPQPLQPPPPPPPPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MLKPGDPGGSAFLKVDPAYLQHWQQLFPHGGAGPLKGSGAAGLLSAPQPLQPPPPPPPPE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 RAEPPPDSLRPRPASLSSASSTPASSSTSASSASSCAAAAAAAALAGLSALPVSQLPVFA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 RAEPPPDSLRPRPASLSSASSTPASSSTSASSASSCAAAAAAAALAGLSALPVSQLPVFA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 PLAAAAVAAEPLPPKELCLGATSGPGPVKCGGGGGGGGEGRGAPRFRCSAEELDYYLYGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 PLAAAAVAAEPLPPKELCLGATSGPGPVKCGGGGGGGGEGRGAPRFRCSAEELDYYLYGQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 QRMEIIPLNQHTSDPNNRCDMCADNRNGECPMHGPLHSLRRLVGTSSAAAAAPPPELPEW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 QRMEIIPLNQHTSDPNNRCDMCADNRNGECPMHGPLHSLRRLVGTSSAAAAAPPPELPEW
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 LRDLPREVCLCTSTVPGLAYGICAAQRIQQGTWIGPFQGVLLPPEKVQAGAVRNTQHLWE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 LRDLPREVCLCTSTVPGLAYGICAAQRIQQGTWIGPFQGVLLPPEKVQAGAVRNTQHLWE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 IYDQDGTLQHFIDGGEPSKSSWMRYIRCARHCGEQNLTVVQYRSNIFYRACIDIPRGTEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 IYDQDGTLQHFIDGGEPSKSSWMRYIRCARHCGEQNLTVVQYRSNIFYRACIDIPRGTEL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 LVWYNDSYTSFFGIPLQCIAQDENLNVPSTVMEAMCRQDALQPFNKSSKLAPTTQQRSVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 LVWYNDSYTSFFGIPLQCIAQDENLNVPSTVMEAMCRQDALQPFNKSSKLAPTTQQRSVV
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE1 FPQTPCSRNFSLLDKSGPIESGFNQINVKNQRVLASPTSTSQLHSEFSDWHLWKCGQCFK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 FPQTPCSRNFSLLDKSGPIESGFNQINVKNQRVLASPTSTSQLHSEFSDWHLWKCGQCFK
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE1 TFTQRILLQMHVCTQNPDRPYQCGHCSQSFSQPSELRNHVVTHSSDRPFKCGYCGRAFAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 TFTQRILLQMHVCTQNPDRPYQCGHCSQSFSQPSELRNHVVTHSSDRPFKCGYCGRAFAG
              490       500       510       520       530       540

              550       560       570       580       590     
pF1KE1 ATTLNNHIRTHTGEKPFKCERCERSFTQATQLSRHQRMPNECKPITESPESIEVD
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 ATTLNNHIRTHTGEKPFKCERCERSFTQATQLSRHQRMPNECKPITESPESIEVD
              550       560       570       580       590     




595 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 03:48:32 2016 done: Thu Nov  3 03:48:33 2016
 Total Scan time:  3.810 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]