Result of FASTA (omim) for
pFN21AE1225
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1225, 287 aa
1>>>pF1KE1225 287 - 287 aa - 287 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.7674+/-0.000399; mu= 13.4063+/- 0.025
mean_var=107.1896+/-21.879, 0's: 0 Z-trim(114.4): 215 B-trim: 9 in 1/52
Lambda= 0.123879
statistics sampled from 24016 (24270) to 24016 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.671), E-opt: 0.2 (0.285), width: 16
Scan time: 5.150
The best scores are: opt bits E(85289)
NP_001138486 (OMIM: 612601) ret finger protein-lik ( 287) 1969 362.6 4.8e-100
XP_011525217 (OMIM: 612601) PREDICTED: ret finger ( 344) 1969 362.7 5.4e-100
XP_016884391 (OMIM: 605968) PREDICTED: ret finger ( 288) 1166 219.1 7.6e-57
XP_016884390 (OMIM: 605968) PREDICTED: ret finger ( 288) 1166 219.1 7.6e-57
XP_011528600 (OMIM: 605968) PREDICTED: ret finger ( 288) 1166 219.1 7.6e-57
XP_011528601 (OMIM: 605968) PREDICTED: ret finger ( 288) 1166 219.1 7.6e-57
XP_016884389 (OMIM: 605968) PREDICTED: ret finger ( 288) 1166 219.1 7.6e-57
NP_066306 (OMIM: 605968) ret finger protein-like 1 ( 317) 1166 219.2 8.2e-57
NP_006595 (OMIM: 605970) ret finger protein-like 3 ( 288) 1145 215.4 1e-55
NP_001092005 (OMIM: 605970) ret finger protein-lik ( 317) 1145 215.4 1.1e-55
XP_016884025 (OMIM: 605969) PREDICTED: ret finger ( 288) 1104 208.1 1.7e-53
XP_016884024 (OMIM: 605969) PREDICTED: ret finger ( 288) 1104 208.1 1.7e-53
NP_001153017 (OMIM: 605969) ret finger protein-lik ( 288) 1104 208.1 1.7e-53
NP_001153018 (OMIM: 605969) ret finger protein-lik ( 288) 1104 208.1 1.7e-53
NP_006596 (OMIM: 605969) ret finger protein-like 2 ( 317) 1104 208.1 1.8e-53
NP_001091997 (OMIM: 605969) ret finger protein-lik ( 378) 1104 208.2 2e-53
XP_011528134 (OMIM: 605969) PREDICTED: ret finger ( 378) 1104 208.2 2e-53
XP_011528128 (OMIM: 605969) PREDICTED: ret finger ( 416) 1104 208.2 2.1e-53
XP_011528129 (OMIM: 605969) PREDICTED: ret finger ( 416) 1104 208.2 2.1e-53
XP_011528132 (OMIM: 605969) PREDICTED: ret finger ( 416) 1104 208.2 2.1e-53
XP_011528130 (OMIM: 605969) PREDICTED: ret finger ( 416) 1104 208.2 2.1e-53
NP_006501 (OMIM: 602165) zinc finger protein RFP [ ( 513) 530 105.7 1.9e-22
NP_003132 (OMIM: 109092) E3 ubiquitin-protein liga ( 475) 492 98.9 2e-20
XP_011542587 (OMIM: 607868) PREDICTED: E3 ubiquiti ( 391) 482 97.0 6e-20
XP_016857901 (OMIM: 607868) PREDICTED: E3 ubiquiti ( 467) 483 97.3 6e-20
NP_660215 (OMIM: 607868) E3 ubiquitin-protein liga ( 468) 483 97.3 6e-20
NP_008925 (OMIM: 613595) butyrophilin subfamily 3 ( 584) 472 95.4 2.7e-19
NP_001229732 (OMIM: 613595) butyrophilin subfamily ( 374) 467 94.3 3.7e-19
NP_001184162 (OMIM: 613590) butyrophilin subfamily ( 466) 468 94.6 3.8e-19
NP_008980 (OMIM: 613590) butyrophilin subfamily 2 ( 527) 468 94.6 4.2e-19
NP_932078 (OMIM: 613595) butyrophilin subfamily 3 ( 535) 467 94.5 4.8e-19
NP_001184168 (OMIM: 613591) butyrophilin subfamily ( 313) 460 93.0 7.8e-19
XP_011512533 (OMIM: 613591) PREDICTED: butyrophili ( 313) 460 93.0 7.8e-19
NP_061008 (OMIM: 111620,111750,609017) erythroid m ( 475) 461 93.3 9.3e-19
XP_011538872 (OMIM: 111620,111750,609017) PREDICTE ( 475) 461 93.3 9.3e-19
NP_001017922 (OMIM: 111620,111750,609017) erythroi ( 475) 461 93.3 9.3e-19
XP_006710376 (OMIM: 111620,111750,609017) PREDICTE ( 475) 461 93.3 9.3e-19
NP_853509 (OMIM: 613591) butyrophilin subfamily 2 ( 407) 460 93.1 9.4e-19
XP_016865656 (OMIM: 613591) PREDICTED: butyrophili ( 407) 460 93.1 9.4e-19
XP_005248855 (OMIM: 613591) PREDICTED: butyrophili ( 407) 460 93.1 9.4e-19
XP_011512531 (OMIM: 613591) PREDICTED: butyrophili ( 461) 460 93.2 1e-18
XP_016865655 (OMIM: 613591) PREDICTED: butyrophili ( 461) 460 93.2 1e-18
XP_011512530 (OMIM: 613591) PREDICTED: butyrophili ( 523) 460 93.2 1.1e-18
NP_008926 (OMIM: 613591) butyrophilin subfamily 2 ( 523) 460 93.2 1.1e-18
XP_005248854 (OMIM: 613591) PREDICTED: butyrophili ( 523) 460 93.2 1.1e-18
NP_001184166 (OMIM: 613591) butyrophilin subfamily ( 523) 460 93.2 1.1e-18
XP_006715016 (OMIM: 613591) PREDICTED: butyrophili ( 523) 460 93.2 1.1e-18
NP_742013 (OMIM: 605700) E3 ubiquitin-protein liga ( 488) 453 91.9 2.5e-18
NP_001723 (OMIM: 601610) butyrophilin subfamily 1 ( 526) 453 92.0 2.7e-18
XP_005249397 (OMIM: 601610) PREDICTED: butyrophili ( 626) 453 92.0 3e-18
>>NP_001138486 (OMIM: 612601) ret finger protein-like 4A (287 aa)
initn: 1969 init1: 1969 opt: 1969 Z-score: 1917.1 bits: 362.6 E(85289): 4.8e-100
Smith-Waterman score: 1969; 100.0% identity (100.0% similar) in 287 aa overlap (1-287:1-287)
10 20 30 40 50 60
pF1KE1 MAEHFKQIIRCPVCLKDLEEAVQLKCGYACCLQCLNSLQKEPDGEGLLCRFCSVVSQKDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAEHFKQIIRCPVCLKDLEEAVQLKCGYACCLQCLNSLQKEPDGEGLLCRFCSVVSQKDD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 IKPKYKLRALVSIIKELEPKLKSVLTMNPRMRKFQVDMTFDVDTANNYLIISEDLRSFRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IKPKYKLRALVSIIKELEPKLKSVLTMNPRMRKFQVDMTFDVDTANNYLIISEDLRSFRS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 GDLSQNRKEQAERFDTALCVLGTPRFTSGRHYWEVDVGTSQVWDVGVCKESVNRQGKIVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GDLSQNRKEQAERFDTALCVLGTPRFTSGRHYWEVDVGTSQVWDVGVCKESVNRQGKIVL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 SSEHGFLTVGCREGKVFAASTVPMTPLWVSPQLHRVGIFLDVGMRSIAFYNVSDGCHIYT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SSEHGFLTVGCREGKVFAASTVPMTPLWVSPQLHRVGIFLDVGMRSIAFYNVSDGCHIYT
190 200 210 220 230 240
250 260 270 280
pF1KE1 FIEIPVCEPWRPFFAHKRGSQDDQSILSICSVINPSAASAPVSSEGK
:::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FIEIPVCEPWRPFFAHKRGSQDDQSILSICSVINPSAASAPVSSEGK
250 260 270 280
>>XP_011525217 (OMIM: 612601) PREDICTED: ret finger prot (344 aa)
initn: 1969 init1: 1969 opt: 1969 Z-score: 1916.1 bits: 362.7 E(85289): 5.4e-100
Smith-Waterman score: 1969; 100.0% identity (100.0% similar) in 287 aa overlap (1-287:58-344)
10 20 30
pF1KE1 MAEHFKQIIRCPVCLKDLEEAVQLKCGYAC
::::::::::::::::::::::::::::::
XP_011 PWQAALTPDLSCPQKQLEARGETPEGETFAMAEHFKQIIRCPVCLKDLEEAVQLKCGYAC
30 40 50 60 70 80
40 50 60 70 80 90
pF1KE1 CLQCLNSLQKEPDGEGLLCRFCSVVSQKDDIKPKYKLRALVSIIKELEPKLKSVLTMNPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CLQCLNSLQKEPDGEGLLCRFCSVVSQKDDIKPKYKLRALVSIIKELEPKLKSVLTMNPR
90 100 110 120 130 140
100 110 120 130 140 150
pF1KE1 MRKFQVDMTFDVDTANNYLIISEDLRSFRSGDLSQNRKEQAERFDTALCVLGTPRFTSGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MRKFQVDMTFDVDTANNYLIISEDLRSFRSGDLSQNRKEQAERFDTALCVLGTPRFTSGR
150 160 170 180 190 200
160 170 180 190 200 210
pF1KE1 HYWEVDVGTSQVWDVGVCKESVNRQGKIVLSSEHGFLTVGCREGKVFAASTVPMTPLWVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HYWEVDVGTSQVWDVGVCKESVNRQGKIVLSSEHGFLTVGCREGKVFAASTVPMTPLWVS
210 220 230 240 250 260
220 230 240 250 260 270
pF1KE1 PQLHRVGIFLDVGMRSIAFYNVSDGCHIYTFIEIPVCEPWRPFFAHKRGSQDDQSILSIC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PQLHRVGIFLDVGMRSIAFYNVSDGCHIYTFIEIPVCEPWRPFFAHKRGSQDDQSILSIC
270 280 290 300 310 320
280
pF1KE1 SVINPSAASAPVSSEGK
:::::::::::::::::
XP_011 SVINPSAASAPVSSEGK
330 340
>>XP_016884391 (OMIM: 605968) PREDICTED: ret finger prot (288 aa)
initn: 1166 init1: 1166 opt: 1166 Z-score: 1141.5 bits: 219.1 E(85289): 7.6e-57
Smith-Waterman score: 1166; 58.5% identity (83.3% similar) in 282 aa overlap (1-282:1-282)
10 20 30 40 50 60
pF1KE1 MAEHFKQIIRCPVCLKDLEEAVQLKCGYACCLQCLNSLQKEPDGEGLLCRFCSVVSQKDD
:: :.. :::: ::. ..:.:: : :..:.::::::: :: ::: ::.::::.
XP_016 MAALFQEASSCPVCSDYLEKPMSLECGCAVCFKCINSLQKEPHGEDLLCCCCSMVSQKNK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 IKPKYKLRALVSIIKELEPKLKSVLTMNPRMRKFQVDMTFDVDTANNYLIISEDLRSFRS
:.:...:. :.: :::::::::..: :::::::::::::.:.:::::.:.::.:::: ::
XP_016 IRPSWQLERLASHIKELEPKLKKILQMNPRMRKFQVDMTLDADTANNFLLISDDLRSVRS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 GDLSQNRKEQAERFDTALCVLGTPRFTSGRHYWEVDVGTSQVWDVGVCKESVNRQGKIVL
: ..:::.. :::::...:.::.:::: :::::::::::: ::.:::.:::.:.:.: :
XP_016 GCITQNRQDLAERFDVSICILGSPRFTCGRHYWEVDVGTSTEWDLGVCRESVHRKGRIHL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 SSEHGFLTVGCREGKVFAASTVPMTPLWVSPQLHRVGIFLDVGMRSIAFYNVSDGCHIYT
..:.:: ::. :.:. ..:::::.: :.:. .:.:::::::.::....:... : :.::
XP_016 TTERGFWTVSLRDGSRLSASTVPLTFLFVDRKLQRVGIFLDMGMQNVSFFDAEGGSHVYT
190 200 210 220 230 240
250 260 270 280
pF1KE1 FIEIPVCEPWRPFFAHKRGSQDDQSILSICSVINPSAASAPVSSEGK
: . . :: . ::: . :.:.:::: ::::....:::
XP_016 FRSVSAEEPLHLFFAPPSPPNGDKSVLSICPVINPGTTDAPVHPGEAK
250 260 270 280
>>XP_016884390 (OMIM: 605968) PREDICTED: ret finger prot (288 aa)
initn: 1166 init1: 1166 opt: 1166 Z-score: 1141.5 bits: 219.1 E(85289): 7.6e-57
Smith-Waterman score: 1166; 58.5% identity (83.3% similar) in 282 aa overlap (1-282:1-282)
10 20 30 40 50 60
pF1KE1 MAEHFKQIIRCPVCLKDLEEAVQLKCGYACCLQCLNSLQKEPDGEGLLCRFCSVVSQKDD
:: :.. :::: ::. ..:.:: : :..:.::::::: :: ::: ::.::::.
XP_016 MAALFQEASSCPVCSDYLEKPMSLECGCAVCFKCINSLQKEPHGEDLLCCCCSMVSQKNK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 IKPKYKLRALVSIIKELEPKLKSVLTMNPRMRKFQVDMTFDVDTANNYLIISEDLRSFRS
:.:...:. :.: :::::::::..: :::::::::::::.:.:::::.:.::.:::: ::
XP_016 IRPSWQLERLASHIKELEPKLKKILQMNPRMRKFQVDMTLDADTANNFLLISDDLRSVRS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 GDLSQNRKEQAERFDTALCVLGTPRFTSGRHYWEVDVGTSQVWDVGVCKESVNRQGKIVL
: ..:::.. :::::...:.::.:::: :::::::::::: ::.:::.:::.:.:.: :
XP_016 GCITQNRQDLAERFDVSICILGSPRFTCGRHYWEVDVGTSTEWDLGVCRESVHRKGRIHL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 SSEHGFLTVGCREGKVFAASTVPMTPLWVSPQLHRVGIFLDVGMRSIAFYNVSDGCHIYT
..:.:: ::. :.:. ..:::::.: :.:. .:.:::::::.::....:... : :.::
XP_016 TTERGFWTVSLRDGSRLSASTVPLTFLFVDRKLQRVGIFLDMGMQNVSFFDAEGGSHVYT
190 200 210 220 230 240
250 260 270 280
pF1KE1 FIEIPVCEPWRPFFAHKRGSQDDQSILSICSVINPSAASAPVSSEGK
: . . :: . ::: . :.:.:::: ::::....:::
XP_016 FRSVSAEEPLHLFFAPPSPPNGDKSVLSICPVINPGTTDAPVHPGEAK
250 260 270 280
>>XP_011528600 (OMIM: 605968) PREDICTED: ret finger prot (288 aa)
initn: 1166 init1: 1166 opt: 1166 Z-score: 1141.5 bits: 219.1 E(85289): 7.6e-57
Smith-Waterman score: 1166; 58.5% identity (83.3% similar) in 282 aa overlap (1-282:1-282)
10 20 30 40 50 60
pF1KE1 MAEHFKQIIRCPVCLKDLEEAVQLKCGYACCLQCLNSLQKEPDGEGLLCRFCSVVSQKDD
:: :.. :::: ::. ..:.:: : :..:.::::::: :: ::: ::.::::.
XP_011 MAALFQEASSCPVCSDYLEKPMSLECGCAVCFKCINSLQKEPHGEDLLCCCCSMVSQKNK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 IKPKYKLRALVSIIKELEPKLKSVLTMNPRMRKFQVDMTFDVDTANNYLIISEDLRSFRS
:.:...:. :.: :::::::::..: :::::::::::::.:.:::::.:.::.:::: ::
XP_011 IRPSWQLERLASHIKELEPKLKKILQMNPRMRKFQVDMTLDADTANNFLLISDDLRSVRS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 GDLSQNRKEQAERFDTALCVLGTPRFTSGRHYWEVDVGTSQVWDVGVCKESVNRQGKIVL
: ..:::.. :::::...:.::.:::: :::::::::::: ::.:::.:::.:.:.: :
XP_011 GCITQNRQDLAERFDVSICILGSPRFTCGRHYWEVDVGTSTEWDLGVCRESVHRKGRIHL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 SSEHGFLTVGCREGKVFAASTVPMTPLWVSPQLHRVGIFLDVGMRSIAFYNVSDGCHIYT
..:.:: ::. :.:. ..:::::.: :.:. .:.:::::::.::....:... : :.::
XP_011 TTERGFWTVSLRDGSRLSASTVPLTFLFVDRKLQRVGIFLDMGMQNVSFFDAEGGSHVYT
190 200 210 220 230 240
250 260 270 280
pF1KE1 FIEIPVCEPWRPFFAHKRGSQDDQSILSICSVINPSAASAPVSSEGK
: . . :: . ::: . :.:.:::: ::::....:::
XP_011 FRSVSAEEPLHLFFAPPSPPNGDKSVLSICPVINPGTTDAPVHPGEAK
250 260 270 280
>>XP_011528601 (OMIM: 605968) PREDICTED: ret finger prot (288 aa)
initn: 1166 init1: 1166 opt: 1166 Z-score: 1141.5 bits: 219.1 E(85289): 7.6e-57
Smith-Waterman score: 1166; 58.5% identity (83.3% similar) in 282 aa overlap (1-282:1-282)
10 20 30 40 50 60
pF1KE1 MAEHFKQIIRCPVCLKDLEEAVQLKCGYACCLQCLNSLQKEPDGEGLLCRFCSVVSQKDD
:: :.. :::: ::. ..:.:: : :..:.::::::: :: ::: ::.::::.
XP_011 MAALFQEASSCPVCSDYLEKPMSLECGCAVCFKCINSLQKEPHGEDLLCCCCSMVSQKNK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 IKPKYKLRALVSIIKELEPKLKSVLTMNPRMRKFQVDMTFDVDTANNYLIISEDLRSFRS
:.:...:. :.: :::::::::..: :::::::::::::.:.:::::.:.::.:::: ::
XP_011 IRPSWQLERLASHIKELEPKLKKILQMNPRMRKFQVDMTLDADTANNFLLISDDLRSVRS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 GDLSQNRKEQAERFDTALCVLGTPRFTSGRHYWEVDVGTSQVWDVGVCKESVNRQGKIVL
: ..:::.. :::::...:.::.:::: :::::::::::: ::.:::.:::.:.:.: :
XP_011 GCITQNRQDLAERFDVSICILGSPRFTCGRHYWEVDVGTSTEWDLGVCRESVHRKGRIHL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 SSEHGFLTVGCREGKVFAASTVPMTPLWVSPQLHRVGIFLDVGMRSIAFYNVSDGCHIYT
..:.:: ::. :.:. ..:::::.: :.:. .:.:::::::.::....:... : :.::
XP_011 TTERGFWTVSLRDGSRLSASTVPLTFLFVDRKLQRVGIFLDMGMQNVSFFDAEGGSHVYT
190 200 210 220 230 240
250 260 270 280
pF1KE1 FIEIPVCEPWRPFFAHKRGSQDDQSILSICSVINPSAASAPVSSEGK
: . . :: . ::: . :.:.:::: ::::....:::
XP_011 FRSVSAEEPLHLFFAPPSPPNGDKSVLSICPVINPGTTDAPVHPGEAK
250 260 270 280
>>XP_016884389 (OMIM: 605968) PREDICTED: ret finger prot (288 aa)
initn: 1166 init1: 1166 opt: 1166 Z-score: 1141.5 bits: 219.1 E(85289): 7.6e-57
Smith-Waterman score: 1166; 58.5% identity (83.3% similar) in 282 aa overlap (1-282:1-282)
10 20 30 40 50 60
pF1KE1 MAEHFKQIIRCPVCLKDLEEAVQLKCGYACCLQCLNSLQKEPDGEGLLCRFCSVVSQKDD
:: :.. :::: ::. ..:.:: : :..:.::::::: :: ::: ::.::::.
XP_016 MAALFQEASSCPVCSDYLEKPMSLECGCAVCFKCINSLQKEPHGEDLLCCCCSMVSQKNK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 IKPKYKLRALVSIIKELEPKLKSVLTMNPRMRKFQVDMTFDVDTANNYLIISEDLRSFRS
:.:...:. :.: :::::::::..: :::::::::::::.:.:::::.:.::.:::: ::
XP_016 IRPSWQLERLASHIKELEPKLKKILQMNPRMRKFQVDMTLDADTANNFLLISDDLRSVRS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 GDLSQNRKEQAERFDTALCVLGTPRFTSGRHYWEVDVGTSQVWDVGVCKESVNRQGKIVL
: ..:::.. :::::...:.::.:::: :::::::::::: ::.:::.:::.:.:.: :
XP_016 GCITQNRQDLAERFDVSICILGSPRFTCGRHYWEVDVGTSTEWDLGVCRESVHRKGRIHL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 SSEHGFLTVGCREGKVFAASTVPMTPLWVSPQLHRVGIFLDVGMRSIAFYNVSDGCHIYT
..:.:: ::. :.:. ..:::::.: :.:. .:.:::::::.::....:... : :.::
XP_016 TTERGFWTVSLRDGSRLSASTVPLTFLFVDRKLQRVGIFLDMGMQNVSFFDAEGGSHVYT
190 200 210 220 230 240
250 260 270 280
pF1KE1 FIEIPVCEPWRPFFAHKRGSQDDQSILSICSVINPSAASAPVSSEGK
: . . :: . ::: . :.:.:::: ::::....:::
XP_016 FRSVSAEEPLHLFFAPPSPPNGDKSVLSICPVINPGTTDAPVHPGEAK
250 260 270 280
>>NP_066306 (OMIM: 605968) ret finger protein-like 1 [Ho (317 aa)
initn: 1166 init1: 1166 opt: 1166 Z-score: 1141.0 bits: 219.2 E(85289): 8.2e-57
Smith-Waterman score: 1166; 58.5% identity (83.3% similar) in 282 aa overlap (1-282:30-311)
10 20 30
pF1KE1 MAEHFKQIIRCPVCLKDLEEAVQLKCGYACC
:: :.. :::: ::. ..:.:: : :
NP_066 MKRLSLVTTNRLSPHGNFLPLCTFPLAVDMAALFQEASSCPVCSDYLEKPMSLECGCAVC
10 20 30 40 50 60
40 50 60 70 80 90
pF1KE1 LQCLNSLQKEPDGEGLLCRFCSVVSQKDDIKPKYKLRALVSIIKELEPKLKSVLTMNPRM
..:.::::::: :: ::: ::.::::. :.:...:. :.: :::::::::..: :::::
NP_066 FKCINSLQKEPHGEDLLCCCCSMVSQKNKIRPSWQLERLASHIKELEPKLKKILQMNPRM
70 80 90 100 110 120
100 110 120 130 140 150
pF1KE1 RKFQVDMTFDVDTANNYLIISEDLRSFRSGDLSQNRKEQAERFDTALCVLGTPRFTSGRH
::::::::.:.:::::.:.::.:::: ::: ..:::.. :::::...:.::.:::: :::
NP_066 RKFQVDMTLDADTANNFLLISDDLRSVRSGCITQNRQDLAERFDVSICILGSPRFTCGRH
130 140 150 160 170 180
160 170 180 190 200 210
pF1KE1 YWEVDVGTSQVWDVGVCKESVNRQGKIVLSSEHGFLTVGCREGKVFAASTVPMTPLWVSP
::::::::: ::.:::.:::.:.:.: :..:.:: ::. :.:. ..:::::.: :.:.
NP_066 YWEVDVGTSTEWDLGVCRESVHRKGRIHLTTERGFWTVSLRDGSRLSASTVPLTFLFVDR
190 200 210 220 230 240
220 230 240 250 260 270
pF1KE1 QLHRVGIFLDVGMRSIAFYNVSDGCHIYTFIEIPVCEPWRPFFAHKRGSQDDQSILSICS
.:.:::::::.::....:... : :.::: . . :: . ::: . :.:.::::
NP_066 KLQRVGIFLDMGMQNVSFFDAEGGSHVYTFRSVSAEEPLHLFFAPPSPPNGDKSVLSICP
250 260 270 280 290 300
280
pF1KE1 VINPSAASAPVSSEGK
::::....:::
NP_066 VINPGTTDAPVHPGEAK
310
>>NP_006595 (OMIM: 605970) ret finger protein-like 3 iso (288 aa)
initn: 1145 init1: 1145 opt: 1145 Z-score: 1121.2 bits: 215.4 E(85289): 1e-55
Smith-Waterman score: 1145; 57.8% identity (82.6% similar) in 282 aa overlap (1-282:1-282)
10 20 30 40 50 60
pF1KE1 MAEHFKQIIRCPVCLKDLEEAVQLKCGYACCLQCLNSLQKEPDGEGLLCRFCSVVSQKDD
:: :.. :::: ::. ..:.:: . ::.:.::::::: :: ::: ::.:::..
NP_006 MAALFQEASSCPVCSDYLEKPMSLECGCTVCLKCINSLQKEPHGEDLLCCCCSMVSQRNK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 IKPKYKLRALVSIIKELEPKLKSVLTMNPRMRKFQVDMTFDVDTANNYLIISEDLRSFRS
:.:. .:. ::: :::::::::..: :::::::::::::.:.:::::.:.::.:::: ::
NP_006 IRPNRQLERLVSHIKELEPKLKKILQMNPRMRKFQVDMTLDADTANNFLLISDDLRSVRS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 GDLSQNRKEQAERFDTALCVLGTPRFTSGRHYWEVDVGTSQVWDVGVCKESVNRQGKIVL
: ..:::.. :::::...:.::.:::: :::::::::::: ::.:::.:::. .::: :
NP_006 GLITQNRQDLAERFDVSVCILGSPRFTCGRHYWEVDVGTSTEWDLGVCRESVHCKGKIQL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 SSEHGFLTVGCREGKVFAASTVPMTPLWVSPQLHRVGIFLDVGMRSIAFYNVSDGCHIYT
..: :: ::. :.:. ..:::::.: : :. .:.:::::::.::....:... .: :.::
NP_006 TTELGFWTVSLRDGSRLSASTVPLTFLLVDRKLQRVGIFLDMGMQNVSFFDAESGSHVYT
190 200 210 220 230 240
250 260 270 280
pF1KE1 FIEIPVCEPWRPFFAHKRGSQDDQSILSICSVINPSAASAPVSSEGK
: . . :: :::.: . . ::..:::: ..: ....:::
NP_006 FRSVSAEEPLRPFLAPSIPPNGDQGVLSICPLMNSGTTDAPVRPGEAK
250 260 270 280
>>NP_001092005 (OMIM: 605970) ret finger protein-like 3 (317 aa)
initn: 1145 init1: 1145 opt: 1145 Z-score: 1120.7 bits: 215.4 E(85289): 1.1e-55
Smith-Waterman score: 1145; 57.8% identity (82.6% similar) in 282 aa overlap (1-282:30-311)
10 20 30
pF1KE1 MAEHFKQIIRCPVCLKDLEEAVQLKCGYACC
:: :.. :::: ::. ..:.:: . :
NP_001 MKRLSLVTTNRLSPQGNFLPLCTFPLAVDMAALFQEASSCPVCSDYLEKPMSLECGCTVC
10 20 30 40 50 60
40 50 60 70 80 90
pF1KE1 LQCLNSLQKEPDGEGLLCRFCSVVSQKDDIKPKYKLRALVSIIKELEPKLKSVLTMNPRM
:.:.::::::: :: ::: ::.:::.. :.:. .:. ::: :::::::::..: :::::
NP_001 LKCINSLQKEPHGEDLLCCCCSMVSQRNKIRPNRQLERLVSHIKELEPKLKKILQMNPRM
70 80 90 100 110 120
100 110 120 130 140 150
pF1KE1 RKFQVDMTFDVDTANNYLIISEDLRSFRSGDLSQNRKEQAERFDTALCVLGTPRFTSGRH
::::::::.:.:::::.:.::.:::: ::: ..:::.. :::::...:.::.:::: :::
NP_001 RKFQVDMTLDADTANNFLLISDDLRSVRSGLITQNRQDLAERFDVSVCILGSPRFTCGRH
130 140 150 160 170 180
160 170 180 190 200 210
pF1KE1 YWEVDVGTSQVWDVGVCKESVNRQGKIVLSSEHGFLTVGCREGKVFAASTVPMTPLWVSP
::::::::: ::.:::.:::. .::: :..: :: ::. :.:. ..:::::.: : :.
NP_001 YWEVDVGTSTEWDLGVCRESVHCKGKIQLTTELGFWTVSLRDGSRLSASTVPLTFLLVDR
190 200 210 220 230 240
220 230 240 250 260 270
pF1KE1 QLHRVGIFLDVGMRSIAFYNVSDGCHIYTFIEIPVCEPWRPFFAHKRGSQDDQSILSICS
.:.:::::::.::....:... .: :.::: . . :: :::.: . . ::..::::
NP_001 KLQRVGIFLDMGMQNVSFFDAESGSHVYTFRSVSAEEPLRPFLAPSIPPNGDQGVLSICP
250 260 270 280 290 300
280
pF1KE1 VINPSAASAPVSSEGK
..: ....:::
NP_001 LMNSGTTDAPVRPGEAK
310
287 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 10:34:20 2016 done: Sun Nov 6 10:34:20 2016
Total Scan time: 5.150 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]