FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1224, 271 aa
  1>>>pF1KE1224 271 - 271 aa - 271 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.2667+/-0.000279; mu= 8.8548+/- 0.018
 mean_var=156.9777+/-31.595, 0's: 0 Z-trim(124.0): 31  B-trim: 62 in 1/54
 Lambda= 0.102366
 statistics sampled from 44849 (44886) to 44849 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.832), E-opt: 0.2 (0.526), width:  16
 Scan time:  8.010

The best scores are:                                      opt bits E(85289)
NP_001096637 (OMIM: 611639) GATA-type zinc finger  ( 271) 1960 300.1 2.9e-81


>>NP_001096637 (OMIM: 611639) GATA-type zinc finger prot  (271 aa)
 initn: 1960 init1: 1960 opt: 1960  Z-score: 1579.8  bits: 300.1 E(85289): 2.9e-81
Smith-Waterman score: 1960; 100.0% identity (100.0% similar) in 271 aa overlap (1-271:1-271)

               10        20        30        40        50        60
pF1KE1 MTEPQVGCVACPRVHKEPAQVGTPWPAKPRSHPRKRDPTALLPRSLWPACQESVTALCFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTEPQVGCVACPRVHKEPAQVGTPWPAKPRSHPRKRDPTALLPRSLWPACQESVTALCFL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 QETVERLGQSPAQDTPVLGPCWDPMALGTQGRLLLDRDSKDTQTRISQKGRRLQPPGTPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QETVERLGQSPAQDTPVLGPCWDPMALGTQGRLLLDRDSKDTQTRISQKGRRLQPPGTPS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 APPQRRPRKQLNPCRGTERVDPGFEGVTLKFQIKPDSSLQIIPTYSLPCSSRSQESPADA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 APPQRRPRKQLNPCRGTERVDPGFEGVTLKFQIKPDSSLQIIPTYSLPCSSRSQESPADA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 VGGPAAHPGGTEAHSAGSEALEPRRCASCRTQRTPLWRDAEDGTPLCNACGIRYKKYGTR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VGGPAAHPGGTEAHSAGSEALEPRRCASCRTQRTPLWRDAEDGTPLCNACGIRYKKYGTR
              190       200       210       220       230       240

              250       260       270 
pF1KE1 CSSCWLVPRKNVQPKRLCGRCGVSLDPIQEG
       :::::::::::::::::::::::::::::::
NP_001 CSSCWLVPRKNVQPKRLCGRCGVSLDPIQEG
              250       260       270 




271 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 10:36:42 2016 done: Sun Nov  6 10:36:43 2016
 Total Scan time:  8.010 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]