FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1217, 199 aa
  1>>>pF1KE1217 199 - 199 aa - 199 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1368+/-0.000297; mu= 14.9099+/- 0.019
 mean_var=64.2991+/-12.946, 0's: 0 Z-trim(117.8): 3  B-trim: 449 in 1/48
 Lambda= 0.159945
 statistics sampled from 30101 (30104) to 30101 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.73), E-opt: 0.2 (0.353), width:  16
 Scan time:  5.730

The best scores are:                                      opt bits E(85289)
NP_062563 (OMIM: 606402) gastrokine-1 [Homo sapien ( 199) 1362 322.2 3.5e-88


>>NP_062563 (OMIM: 606402) gastrokine-1 [Homo sapiens]    (199 aa)
 initn: 1362 init1: 1362 opt: 1362  Z-score: 1704.2  bits: 322.2 E(85289): 3.5e-88
Smith-Waterman score: 1362; 100.0% identity (100.0% similar) in 199 aa overlap (1-199:1-199)

               10        20        30        40        50        60
pF1KE1 MLAYSSVHCFREDKMKFTIVFAGLLGVFLAPALANYNINVNDDNNNAGSGQQSVSVNNEH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_062 MLAYSSVHCFREDKMKFTIVFAGLLGVFLAPALANYNINVNDDNNNAGSGQQSVSVNNEH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 NVANVDNNNGWDSWNSIWDYGNGFAATRLFQKKTCIVHKMNKEVMPSIQSLDALVKEKKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_062 NVANVDNNNGWDSWNSIWDYGNGFAATRLFQKKTCIVHKMNKEVMPSIQSLDALVKEKKL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 QGKGPGGPPPKGLMYSVNPNKVDDLSKFGKNIANMCRGIPTYMAEEMQEASLFFYSGTCY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_062 QGKGPGGPPPKGLMYSVNPNKVDDLSKFGKNIANMCRGIPTYMAEEMQEASLFFYSGTCY
              130       140       150       160       170       180

              190         
pF1KE1 TTSVLWIVDISFCGDTVEN
       :::::::::::::::::::
NP_062 TTSVLWIVDISFCGDTVEN
              190         




199 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 18:26:25 2016 done: Sun Nov  6 18:26:26 2016
 Total Scan time:  5.730 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]