Result of FASTA (omim) for
pFN21AE1209
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1209, 130 aa
1>>>pF1KE1209 130 - 130 aa - 130 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0802+/-0.000328; mu= 11.8768+/- 0.020
mean_var=57.2066+/-11.571, 0's: 0 Z-trim(115.5): 46 B-trim: 574 in 2/51
Lambda= 0.169571
statistics sampled from 25962 (26012) to 25962 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.697), E-opt: 0.2 (0.305), width: 16
Scan time: 4.910
The best scores are: opt bits E(85289)
NP_254280 (OMIM: 615015) histone H2A type 3 [Homo ( 130) 825 209.5 1.3e-54
NP_003504 (OMIM: 602795) histone H2A type 1-B/E [H ( 130) 822 208.7 2.1e-54
NP_066390 (OMIM: 602786) histone H2A type 1-B/E [H ( 130) 822 208.7 2.1e-54
NP_003503 (OMIM: 602794) histone H2A type 1-C [Hom ( 130) 821 208.5 2.5e-54
NP_066409 (OMIM: 602792) histone H2A type 1-D [Hom ( 130) 818 207.8 4.2e-54
NP_003507 (OMIM: 142720) histone H2A type 2-A [Hom ( 130) 815 207.0 6.9e-54
NP_003500 (OMIM: 602787) histone H2A type 1 [Homo ( 130) 814 206.8 8.2e-54
NP_003502 (OMIM: 602793) histone H2A type 1 [Homo ( 130) 814 206.8 8.2e-54
NP_003501 (OMIM: 602788) histone H2A type 1 [Homo ( 130) 814 206.8 8.2e-54
NP_066408 (OMIM: 615012) histone H2A type 1 [Homo ( 130) 814 206.8 8.2e-54
NP_003505 (OMIM: 602796) histone H2A type 1 [Homo ( 130) 814 206.8 8.2e-54
NP_542163 (OMIM: 615013) histone H2A type 1-H [Hom ( 128) 800 203.3 8.7e-53
NP_066544 (OMIM: 602791) histone cluster 1, H2aj [ ( 128) 795 202.1 2e-52
NP_003508 (OMIM: 602797) histone H2A type 2-C [Hom ( 129) 785 199.7 1.1e-51
NP_778235 (OMIM: 615014) histone H2A type 2-B [Hom ( 130) 780 198.5 2.6e-51
NP_734466 (OMIM: 613499) histone H2A type 1-A [Hom ( 131) 777 197.7 4.4e-51
NP_002096 (OMIM: 601772) histone H2AX [Homo sapien ( 143) 735 187.5 5.9e-48
XP_011542037 (OMIM: 610054) PREDICTED: core histon ( 195) 496 129.1 3.1e-30
XP_011542036 (OMIM: 610054) PREDICTED: core histon ( 196) 496 129.1 3.1e-30
XP_005272192 (OMIM: 610054) PREDICTED: core histon ( 198) 496 129.1 3.1e-30
XP_005272191 (OMIM: 610054) PREDICTED: core histon ( 199) 496 129.1 3.1e-30
XP_016865558 (OMIM: 610054) PREDICTED: core histon ( 222) 496 129.1 3.4e-30
XP_016865557 (OMIM: 610054) PREDICTED: core histon ( 235) 496 129.1 3.6e-30
XP_016865556 (OMIM: 610054) PREDICTED: core histon ( 251) 496 129.1 3.8e-30
XP_011542035 (OMIM: 610054) PREDICTED: core histon ( 252) 496 129.1 3.8e-30
XP_011542034 (OMIM: 610054) PREDICTED: core histon ( 269) 496 129.1 4e-30
XP_011542033 (OMIM: 610054) PREDICTED: core histon ( 270) 496 129.1 4e-30
XP_005272189 (OMIM: 610054) PREDICTED: core histon ( 368) 496 129.2 5.3e-30
NP_613075 (OMIM: 610054) core histone macro-H2A.1 ( 369) 496 129.2 5.3e-30
NP_001035248 (OMIM: 610054) core histone macro-H2A ( 371) 496 129.2 5.3e-30
NP_004884 (OMIM: 610054) core histone macro-H2A.1 ( 371) 496 129.2 5.3e-30
XP_011542032 (OMIM: 610054) PREDICTED: core histon ( 371) 496 129.2 5.3e-30
NP_613258 (OMIM: 610054) core histone macro-H2A.1 ( 372) 496 129.2 5.3e-30
XP_011542031 (OMIM: 610054) PREDICTED: core histon ( 372) 496 129.2 5.3e-30
NP_061119 (OMIM: 616141) core histone macro-H2A.2 ( 372) 486 126.7 2.9e-29
NP_002097 (OMIM: 142763) histone H2A.Z [Homo sapie ( 128) 455 118.9 2.2e-27
NP_542451 (OMIM: 300445) histone H2A-Bbd type 2/3 ( 115) 298 80.5 7.4e-16
XP_011531366 (OMIM: 135300,182530,610733) PREDICTE (1276) 158 46.7 0.00012
XP_005264572 (OMIM: 135300,182530,610733) PREDICTE (1318) 158 46.8 0.00012
XP_011531364 (OMIM: 135300,182530,610733) PREDICTE (1326) 158 46.8 0.00012
NP_005624 (OMIM: 135300,182530,610733) son of seve (1333) 158 46.8 0.00012
NP_008870 (OMIM: 601247,616559) son of sevenless h (1332) 136 41.4 0.0052
>>NP_254280 (OMIM: 615015) histone H2A type 3 [Homo sapi (130 aa)
initn: 825 init1: 825 opt: 825 Z-score: 1101.6 bits: 209.5 E(85289): 1.3e-54
Smith-Waterman score: 825; 100.0% identity (100.0% similar) in 130 aa overlap (1-130:1-130)
10 20 30 40 50 60
pF1KE1 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_254 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_254 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
70 80 90 100 110 120
130
pF1KE1 TESHHKAKGK
::::::::::
NP_254 TESHHKAKGK
130
>>NP_003504 (OMIM: 602795) histone H2A type 1-B/E [Homo (130 aa)
initn: 822 init1: 822 opt: 822 Z-score: 1097.7 bits: 208.7 E(85289): 2.1e-54
Smith-Waterman score: 822; 99.2% identity (100.0% similar) in 130 aa overlap (1-130:1-130)
10 20 30 40 50 60
pF1KE1 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLT
::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::
NP_003 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
70 80 90 100 110 120
130
pF1KE1 TESHHKAKGK
::::::::::
NP_003 TESHHKAKGK
130
>>NP_066390 (OMIM: 602786) histone H2A type 1-B/E [Homo (130 aa)
initn: 822 init1: 822 opt: 822 Z-score: 1097.7 bits: 208.7 E(85289): 2.1e-54
Smith-Waterman score: 822; 99.2% identity (100.0% similar) in 130 aa overlap (1-130:1-130)
10 20 30 40 50 60
pF1KE1 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLT
::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::
NP_066 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
70 80 90 100 110 120
130
pF1KE1 TESHHKAKGK
::::::::::
NP_066 TESHHKAKGK
130
>>NP_003503 (OMIM: 602794) histone H2A type 1-C [Homo sa (130 aa)
initn: 821 init1: 821 opt: 821 Z-score: 1096.3 bits: 208.5 E(85289): 2.5e-54
Smith-Waterman score: 821; 99.2% identity (100.0% similar) in 130 aa overlap (1-130:1-130)
10 20 30 40 50 60
pF1KE1 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLT
::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::
NP_003 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
70 80 90 100 110 120
130
pF1KE1 TESHHKAKGK
::::::::::
NP_003 TESHHKAKGK
130
>>NP_066409 (OMIM: 602792) histone H2A type 1-D [Homo sa (130 aa)
initn: 818 init1: 818 opt: 818 Z-score: 1092.4 bits: 207.8 E(85289): 4.2e-54
Smith-Waterman score: 818; 98.5% identity (100.0% similar) in 130 aa overlap (1-130:1-130)
10 20 30 40 50 60
pF1KE1 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLT
::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::
NP_066 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
:::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::
NP_066 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
70 80 90 100 110 120
130
pF1KE1 TESHHKAKGK
::::::::::
NP_066 TESHHKAKGK
130
>>NP_003507 (OMIM: 142720) histone H2A type 2-A [Homo sa (130 aa)
initn: 815 init1: 815 opt: 815 Z-score: 1088.4 bits: 207.0 E(85289): 6.9e-54
Smith-Waterman score: 815; 97.7% identity (100.0% similar) in 130 aa overlap (1-130:1-130)
10 20 30 40 50 60
pF1KE1 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLT
::::::::::::::::::::::::::::::::::::::::.::::::::::.::::::::
NP_003 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
:::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::
NP_003 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
70 80 90 100 110 120
130
pF1KE1 TESHHKAKGK
::::::::::
NP_003 TESHHKAKGK
130
>>NP_003500 (OMIM: 602787) histone H2A type 1 [Homo sapi (130 aa)
initn: 814 init1: 814 opt: 814 Z-score: 1087.1 bits: 206.8 E(85289): 8.2e-54
Smith-Waterman score: 814; 97.7% identity (100.0% similar) in 130 aa overlap (1-130:1-130)
10 20 30 40 50 60
pF1KE1 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLT
::::::::::::::::.:::::::::::::::::::::::.:::::::::::::::::::
NP_003 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
:::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::
NP_003 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
70 80 90 100 110 120
130
pF1KE1 TESHHKAKGK
::::::::::
NP_003 TESHHKAKGK
130
>>NP_003502 (OMIM: 602793) histone H2A type 1 [Homo sapi (130 aa)
initn: 814 init1: 814 opt: 814 Z-score: 1087.1 bits: 206.8 E(85289): 8.2e-54
Smith-Waterman score: 814; 97.7% identity (100.0% similar) in 130 aa overlap (1-130:1-130)
10 20 30 40 50 60
pF1KE1 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLT
::::::::::::::::.:::::::::::::::::::::::.:::::::::::::::::::
NP_003 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
:::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::
NP_003 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
70 80 90 100 110 120
130
pF1KE1 TESHHKAKGK
::::::::::
NP_003 TESHHKAKGK
130
>>NP_003501 (OMIM: 602788) histone H2A type 1 [Homo sapi (130 aa)
initn: 814 init1: 814 opt: 814 Z-score: 1087.1 bits: 206.8 E(85289): 8.2e-54
Smith-Waterman score: 814; 97.7% identity (100.0% similar) in 130 aa overlap (1-130:1-130)
10 20 30 40 50 60
pF1KE1 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLT
::::::::::::::::.:::::::::::::::::::::::.:::::::::::::::::::
NP_003 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
:::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::
NP_003 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
70 80 90 100 110 120
130
pF1KE1 TESHHKAKGK
::::::::::
NP_003 TESHHKAKGK
130
>>NP_066408 (OMIM: 615012) histone H2A type 1 [Homo sapi (130 aa)
initn: 814 init1: 814 opt: 814 Z-score: 1087.1 bits: 206.8 E(85289): 8.2e-54
Smith-Waterman score: 814; 97.7% identity (100.0% similar) in 130 aa overlap (1-130:1-130)
10 20 30 40 50 60
pF1KE1 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLT
::::::::::::::::.:::::::::::::::::::::::.:::::::::::::::::::
NP_066 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
:::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::
NP_066 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
70 80 90 100 110 120
130
pF1KE1 TESHHKAKGK
::::::::::
NP_066 TESHHKAKGK
130
130 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 18:39:03 2016 done: Sun Nov 6 18:39:03 2016
Total Scan time: 4.910 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]