FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1143, 425 aa
  1>>>pF1KE1143 425 - 425 aa - 425 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.3741+/-0.000368; mu= 12.2162+/- 0.023
 mean_var=97.6706+/-19.397, 0's: 0 Z-trim(115.1): 65  B-trim: 66 in 1/54
 Lambda= 0.129775
 statistics sampled from 25356 (25420) to 25356 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.668), E-opt: 0.2 (0.298), width:  16
 Scan time:  9.070

The best scores are:                                      opt bits E(85289)
NP_786924 (OMIM: 613816) putative E3 ubiquitin-pro ( 425) 2935 560.0  4e-159


>>NP_786924 (OMIM: 613816) putative E3 ubiquitin-protein  (425 aa)
 initn: 2935 init1: 2935 opt: 2935  Z-score: 2977.8  bits: 560.0 E(85289): 4e-159
Smith-Waterman score: 2935; 100.0% identity (100.0% similar) in 425 aa overlap (1-425:1-425)

               10        20        30        40        50        60
pF1KE1 MAGAEGAAGRQSELEPVVSLVDVLEEDEELENEACAVLGGSDSEKCSYSQGSVKRQALYA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_786 MAGAEGAAGRQSELEPVVSLVDVLEEDEELENEACAVLGGSDSEKCSYSQGSVKRQALYA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 CSTCTPEGEEPAGICLACSYECHGSHKLFELYTKRNFRCDCGNSKFKNLECKLLPDKAKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_786 CSTCTPEGEEPAGICLACSYECHGSHKLFELYTKRNFRCDCGNSKFKNLECKLLPDKAKV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 NSGNKYNDNFFGLYCICKRPYPDPEDEIPDEMIQCVVCEDWFHGRHLGAIPPESGDFQEM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_786 NSGNKYNDNFFGLYCICKRPYPDPEDEIPDEMIQCVVCEDWFHGRHLGAIPPESGDFQEM
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 VCQACMKRCSFLWAYAAQLAVTKISTEDDGLVRNIDGIGDQEVIKPENGEHQDSTLKEDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_786 VCQACMKRCSFLWAYAAQLAVTKISTEDDGLVRNIDGIGDQEVIKPENGEHQDSTLKEDV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 PEQGKDDVREVKVEQNSEPCAGSSSESDLQTVFKNESLNAESKSGCKLQELKAKQLIKKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_786 PEQGKDDVREVKVEQNSEPCAGSSSESDLQTVFKNESLNAESKSGCKLQELKAKQLIKKD
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 TATYWPLNWRSKLCTCQDCMKMYGDLDVLFLTDEYDTVLAYENKGKIAQATDRSDPLMDT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_786 TATYWPLNWRSKLCTCQDCMKMYGDLDVLFLTDEYDTVLAYENKGKIAQATDRSDPLMDT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 LSSMNRVQQVELICEYNDLKTELKDYLKRFADEGTVVKREDIQQFFEEFQSKKRRRVDGM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_786 LSSMNRVQQVELICEYNDLKTELKDYLKRFADEGTVVKREDIQQFFEEFQSKKRRRVDGM
              370       380       390       400       410       420

            
pF1KE1 QYYCS
       :::::
NP_786 QYYCS
            




425 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 14:23:59 2016 done: Sun Nov  6 14:24:00 2016
 Total Scan time:  9.070 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]