Result of FASTA (omim) for
pFN21AE1140
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1140, 403 aa
1>>>pF1KE1140 403 - 403 aa - 403 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.6387+/-0.000305; mu= -5.2721+/- 0.019
mean_var=325.7723+/-66.156, 0's: 0 Z-trim(126.8): 5 B-trim: 0 in 0/62
Lambda= 0.071059
statistics sampled from 53516 (53521) to 53516 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.86), E-opt: 0.2 (0.628), width: 16
Scan time: 11.940
The best scores are: opt bits E(85289)
NP_077273 (OMIM: 612910) PHD finger protein 23 iso ( 403) 2794 299.2 1.2e-80
NP_001271447 (OMIM: 612910) PHD finger protein 23 ( 399) 2722 291.9 1.9e-78
NP_001271446 (OMIM: 612910) PHD finger protein 23 ( 336) 1972 214.9 2.3e-55
>>NP_077273 (OMIM: 612910) PHD finger protein 23 isoform (403 aa)
initn: 2794 init1: 2794 opt: 2794 Z-score: 1569.2 bits: 299.2 E(85289): 1.2e-80
Smith-Waterman score: 2794; 100.0% identity (100.0% similar) in 403 aa overlap (1-403:1-403)
10 20 30 40 50 60
pF1KE1 MLEAMAEPSPEDPPPTLKPETQPPEKRRRTIEDFNKFCSFVLAYAGYIPPSKEESDWPAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_077 MLEAMAEPSPEDPPPTLKPETQPPEKRRRTIEDFNKFCSFVLAYAGYIPPSKEESDWPAS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 GSSSPLRGESAADSDGWDSAPSDLRTIQTFVKKAKSSKRRAAQAGPTQPGPPRSTFSRLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_077 GSSSPLRGESAADSDGWDSAPSDLRTIQTFVKKAKSSKRRAAQAGPTQPGPPRSTFSRLQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 APDSATLLEKMKLKDSLFDLDGPKVASPLSPTSLTHTSRPPAALTPVPLSQGDLSHPPRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_077 APDSATLLEKMKLKDSLFDLDGPKVASPLSPTSLTHTSRPPAALTPVPLSQGDLSHPPRK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 KDRKNRKLGPGAGAGFGVLRRPRPTPGDGEKRSRIKKSKKRKLKKAERGDRLPPPGPPQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_077 KDRKNRKLGPGAGAGFGVLRRPRPTPGDGEKRSRIKKSKKRKLKKAERGDRLPPPGPPQA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 PPSDTDSEEEEEEEEEEEEEEMATVVGGEAPVPVLPTPPEAPRPPATVHPEGVPPADSES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_077 PPSDTDSEEEEEEEEEEEEEEMATVVGGEAPVPVLPTPPEAPRPPATVHPEGVPPADSES
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 KEVGSTETSQDGDASSSEGEMRVMDEDIMVESGDDSWDLITCYCRKPFAGRPMIECSLCG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_077 KEVGSTETSQDGDASSSEGEMRVMDEDIMVESGDDSWDLITCYCRKPFAGRPMIECSLCG
310 320 330 340 350 360
370 380 390 400
pF1KE1 TWIHLSCAKIKKTNVPDFFYCQKCKELRPEARRLGGPPKSGEP
:::::::::::::::::::::::::::::::::::::::::::
NP_077 TWIHLSCAKIKKTNVPDFFYCQKCKELRPEARRLGGPPKSGEP
370 380 390 400
>>NP_001271447 (OMIM: 612910) PHD finger protein 23 isof (399 aa)
initn: 2722 init1: 2722 opt: 2722 Z-score: 1529.4 bits: 291.9 E(85289): 1.9e-78
Smith-Waterman score: 2722; 100.0% identity (100.0% similar) in 392 aa overlap (12-403:8-399)
10 20 30 40 50 60
pF1KE1 MLEAMAEPSPEDPPPTLKPETQPPEKRRRTIEDFNKFCSFVLAYAGYIPPSKEESDWPAS
:::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPGDCRRDPPPTLKPETQPPEKRRRTIEDFNKFCSFVLAYAGYIPPSKEESDWPAS
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 GSSSPLRGESAADSDGWDSAPSDLRTIQTFVKKAKSSKRRAAQAGPTQPGPPRSTFSRLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GSSSPLRGESAADSDGWDSAPSDLRTIQTFVKKAKSSKRRAAQAGPTQPGPPRSTFSRLQ
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE1 APDSATLLEKMKLKDSLFDLDGPKVASPLSPTSLTHTSRPPAALTPVPLSQGDLSHPPRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 APDSATLLEKMKLKDSLFDLDGPKVASPLSPTSLTHTSRPPAALTPVPLSQGDLSHPPRK
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE1 KDRKNRKLGPGAGAGFGVLRRPRPTPGDGEKRSRIKKSKKRKLKKAERGDRLPPPGPPQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KDRKNRKLGPGAGAGFGVLRRPRPTPGDGEKRSRIKKSKKRKLKKAERGDRLPPPGPPQA
180 190 200 210 220 230
250 260 270 280 290 300
pF1KE1 PPSDTDSEEEEEEEEEEEEEEMATVVGGEAPVPVLPTPPEAPRPPATVHPEGVPPADSES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PPSDTDSEEEEEEEEEEEEEEMATVVGGEAPVPVLPTPPEAPRPPATVHPEGVPPADSES
240 250 260 270 280 290
310 320 330 340 350 360
pF1KE1 KEVGSTETSQDGDASSSEGEMRVMDEDIMVESGDDSWDLITCYCRKPFAGRPMIECSLCG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KEVGSTETSQDGDASSSEGEMRVMDEDIMVESGDDSWDLITCYCRKPFAGRPMIECSLCG
300 310 320 330 340 350
370 380 390 400
pF1KE1 TWIHLSCAKIKKTNVPDFFYCQKCKELRPEARRLGGPPKSGEP
:::::::::::::::::::::::::::::::::::::::::::
NP_001 TWIHLSCAKIKKTNVPDFFYCQKCKELRPEARRLGGPPKSGEP
360 370 380 390
>>NP_001271446 (OMIM: 612910) PHD finger protein 23 isof (336 aa)
initn: 1972 init1: 1972 opt: 1972 Z-score: 1114.8 bits: 214.9 E(85289): 2.3e-55
Smith-Waterman score: 2198; 83.4% identity (83.4% similar) in 403 aa overlap (1-403:1-336)
10 20 30 40 50 60
pF1KE1 MLEAMAEPSPEDPPPTLKPETQPPEKRRRTIEDFNKFCSFVLAYAGYIPPSKEESDWPAS
:::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLEAMAEPSPEDPPPTLKPETQPPEKRRRTIEDFNKFCSFVLAYAGYIPPSKE-------
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 GSSSPLRGESAADSDGWDSAPSDLRTIQTFVKKAKSSKRRAAQAGPTQPGPPRSTFSRLQ
NP_001 ------------------------------------------------------------
130 140 150 160 170 180
pF1KE1 APDSATLLEKMKLKDSLFDLDGPKVASPLSPTSLTHTSRPPAALTPVPLSQGDLSHPPRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 APDSATLLEKMKLKDSLFDLDGPKVASPLSPTSLTHTSRPPAALTPVPLSQGDLSHPPRK
60 70 80 90 100 110
190 200 210 220 230 240
pF1KE1 KDRKNRKLGPGAGAGFGVLRRPRPTPGDGEKRSRIKKSKKRKLKKAERGDRLPPPGPPQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KDRKNRKLGPGAGAGFGVLRRPRPTPGDGEKRSRIKKSKKRKLKKAERGDRLPPPGPPQA
120 130 140 150 160 170
250 260 270 280 290 300
pF1KE1 PPSDTDSEEEEEEEEEEEEEEMATVVGGEAPVPVLPTPPEAPRPPATVHPEGVPPADSES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PPSDTDSEEEEEEEEEEEEEEMATVVGGEAPVPVLPTPPEAPRPPATVHPEGVPPADSES
180 190 200 210 220 230
310 320 330 340 350 360
pF1KE1 KEVGSTETSQDGDASSSEGEMRVMDEDIMVESGDDSWDLITCYCRKPFAGRPMIECSLCG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KEVGSTETSQDGDASSSEGEMRVMDEDIMVESGDDSWDLITCYCRKPFAGRPMIECSLCG
240 250 260 270 280 290
370 380 390 400
pF1KE1 TWIHLSCAKIKKTNVPDFFYCQKCKELRPEARRLGGPPKSGEP
:::::::::::::::::::::::::::::::::::::::::::
NP_001 TWIHLSCAKIKKTNVPDFFYCQKCKELRPEARRLGGPPKSGEP
300 310 320 330
403 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 11:04:14 2016 done: Sun Nov 6 11:04:16 2016
Total Scan time: 11.940 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]