FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1131, 259 aa
  1>>>pF1KE1131 259 - 259 aa - 259 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.1034+/-0.000407; mu= 6.6620+/- 0.025
 mean_var=109.1229+/-22.395, 0's: 0 Z-trim(114.6): 7  B-trim: 1569 in 2/53
 Lambda= 0.122777
 statistics sampled from 24492 (24495) to 24492 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.645), E-opt: 0.2 (0.287), width:  16
 Scan time:  7.330

The best scores are:                                      opt bits E(85289)
NP_060937 (OMIM: 610675) vesicle transport protein ( 259) 1633 299.7 3.3e-81
XP_016882464 (OMIM: 610675) PREDICTED: vesicle tra ( 259) 1625 298.3 8.9e-81
XP_016882465 (OMIM: 610675) PREDICTED: vesicle tra ( 189) 1169 217.5 1.4e-56


>>NP_060937 (OMIM: 610675) vesicle transport protein USE  (259 aa)
 initn: 1633 init1: 1633 opt: 1633  Z-score: 1578.8  bits: 299.7 E(85289): 3.3e-81
Smith-Waterman score: 1633; 100.0% identity (100.0% similar) in 259 aa overlap (1-259:1-259)

               10        20        30        40        50        60
pF1KE1 MAASRLELNLVRLLSRCEAMAAEKRDPDEWRLEKYVGALEDMLQALKVHASKPASEVINE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 MAASRLELNLVRLLSRCEAMAAEKRDPDEWRLEKYVGALEDMLQALKVHASKPASEVINE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 YSWKVDFLKGMLQAEKLTSSSEKALANQFLAPGRVPTTARERVPATKTVHLQSRARYTSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 YSWKVDFLKGMLQAEKLTSSSEKALANQFLAPGRVPTTARERVPATKTVHLQSRARYTSE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 MRSELLGTDSAEPEMDVRKRTGVAGSQPVSEKQSAAELDLVLQRHQNLQEKLAEEMLGLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 MRSELLGTDSAEPEMDVRKRTGVAGSQPVSEKQSAAELDLVLQRHQNLQEKLAEEMLGLA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 RSLKTNTLAAQSVIKKDNQTLSHSLKMADQNLEKLKTESERLEQHTQKSVNWLLWAMLII
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 RSLKTNTLAAQSVIKKDNQTLSHSLKMADQNLEKLKTESERLEQHTQKSVNWLLWAMLII
              190       200       210       220       230       240

              250         
pF1KE1 VCFIFISMILFIRIMPKLK
       :::::::::::::::::::
NP_060 VCFIFISMILFIRIMPKLK
              250         

>>XP_016882464 (OMIM: 610675) PREDICTED: vesicle transpo  (259 aa)
 initn: 1625 init1: 1625 opt: 1625  Z-score: 1571.2  bits: 298.3 E(85289): 8.9e-81
Smith-Waterman score: 1625; 99.6% identity (99.6% similar) in 259 aa overlap (1-259:1-259)

               10        20        30        40        50        60
pF1KE1 MAASRLELNLVRLLSRCEAMAAEKRDPDEWRLEKYVGALEDMLQALKVHASKPASEVINE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MAASRLELNLVRLLSRCEAMAAEKRDPDEWRLEKYVGALEDMLQALKVHASKPASEVINE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 YSWKVDFLKGMLQAEKLTSSSEKALANQFLAPGRVPTTARERVPATKTVHLQSRARYTSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YSWKVDFLKGMLQAEKLTSSSEKALANQFLAPGRVPTTARERVPATKTVHLQSRARYTSE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 MRSELLGTDSAEPEMDVRKRTGVAGSQPVSEKQSAAELDLVLQRHQNLQEKLAEEMLGLA
       ::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::
XP_016 MRSELLGTDSAEPEMDVRKRTGVAGSQPVSEKQLAAELDLVLQRHQNLQEKLAEEMLGLA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 RSLKTNTLAAQSVIKKDNQTLSHSLKMADQNLEKLKTESERLEQHTQKSVNWLLWAMLII
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RSLKTNTLAAQSVIKKDNQTLSHSLKMADQNLEKLKTESERLEQHTQKSVNWLLWAMLII
              190       200       210       220       230       240

              250         
pF1KE1 VCFIFISMILFIRIMPKLK
       :::::::::::::::::::
XP_016 VCFIFISMILFIRIMPKLK
              250         

>>XP_016882465 (OMIM: 610675) PREDICTED: vesicle transpo  (189 aa)
 initn: 1169 init1: 1169 opt: 1169  Z-score: 1136.8  bits: 217.5 E(85289): 1.4e-56
Smith-Waterman score: 1169; 99.5% identity (99.5% similar) in 189 aa overlap (71-259:1-189)

               50        60        70        80        90       100
pF1KE1 DMLQALKVHASKPASEVINEYSWKVDFLKGMLQAEKLTSSSEKALANQFLAPGRVPTTAR
                                     ::::::::::::::::::::::::::::::
XP_016                               MLQAEKLTSSSEKALANQFLAPGRVPTTAR
                                             10        20        30

              110       120       130       140       150       160
pF1KE1 ERVPATKTVHLQSRARYTSEMRSELLGTDSAEPEMDVRKRTGVAGSQPVSEKQSAAELDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::
XP_016 ERVPATKTVHLQSRARYTSEMRSELLGTDSAEPEMDVRKRTGVAGSQPVSEKQLAAELDL
               40        50        60        70        80        90

              170       180       190       200       210       220
pF1KE1 VLQRHQNLQEKLAEEMLGLARSLKTNTLAAQSVIKKDNQTLSHSLKMADQNLEKLKTESE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VLQRHQNLQEKLAEEMLGLARSLKTNTLAAQSVIKKDNQTLSHSLKMADQNLEKLKTESE
              100       110       120       130       140       150

              230       240       250         
pF1KE1 RLEQHTQKSVNWLLWAMLIIVCFIFISMILFIRIMPKLK
       :::::::::::::::::::::::::::::::::::::::
XP_016 RLEQHTQKSVNWLLWAMLIIVCFIFISMILFIRIMPKLK
              160       170       180         




259 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 03:34:39 2016 done: Mon Nov  7 03:34:40 2016
 Total Scan time:  7.330 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]