FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1126, 631 aa
  1>>>pF1KE1126 631 - 631 aa - 631 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.4292+/-0.00091; mu= 16.1326+/- 0.055
 mean_var=157.9466+/-32.074, 0's: 0 Z-trim(112.4): 97  B-trim: 3 in 1/50
 Lambda= 0.102051
 statistics sampled from 13057 (13165) to 13057 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.754), E-opt: 0.2 (0.404), width:  16
 Scan time:  3.680

The best scores are:                                      opt bits E(32554)
CCDS58529.1 RNF112 gene_id:7732|Hs108|chr17        ( 631) 4315 647.6 1.5e-185


>>CCDS58529.1 RNF112 gene_id:7732|Hs108|chr17             (631 aa)
 initn: 4315 init1: 4315 opt: 4315  Z-score: 3444.7  bits: 647.6 E(32554): 1.5e-185
Smith-Waterman score: 4315; 100.0% identity (100.0% similar) in 631 aa overlap (1-631:1-631)

               10        20        30        40        50        60
pF1KE1 MPRPALSVTSFCHRLGKRERKQSFMGNSGNSWSHTPFPKLELGLGPQPMAPRELPTCSIC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MPRPALSVTSFCHRLGKRERKQSFMGNSGNSWSHTPFPKLELGLGPQPMAPRELPTCSIC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 LERLRDPISLDCGHDFCIRCFSTHRLPGCEPPCCPECRKICKQKRGLRSLGEKMKLLPQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 LERLRDPISLDCGHDFCIRCFSTHRLPGCEPPCCPECRKICKQKRGLRSLGEKMKLLPQR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 PLPPALQETCPVRAEPLLLVRINASGGLILRMGAINRCLKHPLARDTPVCLLAVLGEQHS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 PLPPALQETCPVRAEPLLLVRINASGGLILRMGAINRCLKHPLARDTPVCLLAVLGEQHS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 GKSFLLNHLLQGLPGLESGEGGRPRGGEASLQGCRWGANGLARGIWMWSHPFLLGKEGKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 GKSFLLNHLLQGLPGLESGEGGRPRGGEASLQGCRWGANGLARGIWMWSHPFLLGKEGKK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 VAVFLVDTGDAMSPELSRETRIKLCALTTMLSSYQILSTSQELKDTDLDYLEMFVHVAEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 VAVFLVDTGDAMSPELSRETRIKLCALTTMLSSYQILSTSQELKDTDLDYLEMFVHVAEV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 MGKHYGMVPIQHLDLLVRDSSHPNKAGQGHVGNIFQRLSGRYPKVQELLQGKRARCCLLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MGKHYGMVPIQHLDLLVRDSSHPNKAGQGHVGNIFQRLSGRYPKVQELLQGKRARCCLLP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 APGRRRMNQGHASPGDTDDDFRHLLGAYVSDVLSAAPQHAKSRCQGYWNEGRAVARGDRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 APGRRRMNQGHASPGDTDDDFRHLLGAYVSDVLSAAPQHAKSRCQGYWNEGRAVARGDRR
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE1 LLTGQQLAQEIKNLSGWMGRTGPGFTSPDEMAAQLHDLRKVEAAKREFEEYVRQQDVATK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 LLTGQQLAQEIKNLSGWMGRTGPGFTSPDEMAAQLHDLRKVEAAKREFEEYVRQQDVATK
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE1 RIFSALRVLPDTMRNLLSTQKDAILARHGVALLCKGRDQTLEALEAELQATAKAFMDSYT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 RIFSALRVLPDTMRNLLSTQKDAILARHGVALLCKGRDQTLEALEAELQATAKAFMDSYT
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE1 MRFCGHLAAVGGAVGAGLMGLAGGVVGAGMAAAALAAEAGMVAAGAAVGATGAAVVGGGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MRFCGHLAAVGGAVGAGLMGLAGGVVGAGMAAAALAAEAGMVAAGAAVGATGAAVVGGGV
              550       560       570       580       590       600

              610       620       630 
pF1KE1 GAGLAATVGCMEKEEDERLLEGDREPLLQEE
       :::::::::::::::::::::::::::::::
CCDS58 GAGLAATVGCMEKEEDERLLEGDREPLLQEE
              610       620       630 




631 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 03:31:25 2016 done: Mon Nov  7 03:31:26 2016
 Total Scan time:  3.680 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]