FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1123, 456 aa
1>>>pF1KE1123 456 - 456 aa - 456 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.9487+/-0.00111; mu= 14.4354+/- 0.066
mean_var=79.1151+/-15.354, 0's: 0 Z-trim(103.4): 55 B-trim: 0 in 0/50
Lambda= 0.144193
statistics sampled from 7338 (7379) to 7338 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.588), E-opt: 0.2 (0.227), width: 16
Scan time: 2.670
The best scores are: opt bits E(32554)
CCDS3047.1 RUVBL1 gene_id:8607|Hs108|chr3 ( 456) 2903 614.0 1e-175
CCDS82833.1 RUVBL1 gene_id:8607|Hs108|chr3 ( 315) 2034 433.1 2e-121
CCDS42588.1 RUVBL2 gene_id:10856|Hs108|chr19 ( 463) 747 165.5 1.1e-40
>>CCDS3047.1 RUVBL1 gene_id:8607|Hs108|chr3 (456 aa)
initn: 2903 init1: 2903 opt: 2903 Z-score: 3268.1 bits: 614.0 E(32554): 1e-175
Smith-Waterman score: 2903; 100.0% identity (100.0% similar) in 456 aa overlap (1-456:1-456)
10 20 30 40 50 60
pF1KE1 MKIEEVKSTTKTQRIASHSHVKGLGLDESGLAKQAASGLVGQENAREACGVIVELIKSKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MKIEEVKSTTKTQRIASHSHVKGLGLDESGLAKQAASGLVGQENAREACGVIVELIKSKK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 MAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVLMENFRRAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVLMENFRRAI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 GLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 GLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 QKERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 QKERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 HDLDVANARPQGGQDILSMMGQLMKPKKTEITDKLRGEINKVVNKYIDQGIAELVPGVLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 HDLDVANARPQGGQDILSMMGQLMKPKKTEITDKLRGEINKVVNKYIDQGIAELVPGVLF
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 VDEVHMLDIECFTYLHRALESSIAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 VDEVHMLDIECFTYLHRALESSIAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMI
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE1 IRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKIN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 IRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKIN
370 380 390 400 410 420
430 440 450
pF1KE1 GKDSIEKEHVEEISELFYDAKSSAKILADQQDKYMK
::::::::::::::::::::::::::::::::::::
CCDS30 GKDSIEKEHVEEISELFYDAKSSAKILADQQDKYMK
430 440 450
>>CCDS82833.1 RUVBL1 gene_id:8607|Hs108|chr3 (315 aa)
initn: 2034 init1: 2034 opt: 2034 Z-score: 2293.6 bits: 433.1 E(32554): 2e-121
Smith-Waterman score: 2034; 99.7% identity (100.0% similar) in 314 aa overlap (61-374:1-314)
40 50 60 70 80 90
pF1KE1 LAKQAASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSK
::::::::::::::::::::::::::::::
CCDS82 MAGRAVLLAGPPGTGKTALALAIAQELGSK
10 20 30
100 110 120 130 140 150
pF1KE1 VPFCPMVGSEVYSTEIKKTEVLMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 VPFCPMVGSEVYSTEIKKTEVLMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGY
40 50 60 70 80 90
160 170 180 190 200 210
pF1KE1 GKTISHVIIGLKTAKGTKQLKLDPSIFESLQKERVEAGDVIYIEANSGAVKRQGRCDTYA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 GKTISHVIIGLKTAKGTKQLKLDPSIFESLQKERVEAGDVIYIEANSGAVKRQGRCDTYA
100 110 120 130 140 150
220 230 240 250 260 270
pF1KE1 TEFDLEAEEYVPLPKGDVHKKKEIIQDVTLHDLDVANARPQGGQDILSMMGQLMKPKKTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 TEFDLEAEEYVPLPKGDVHKKKEIIQDVTLHDLDVANARPQGGQDILSMMGQLMKPKKTE
160 170 180 190 200 210
280 290 300 310 320 330
pF1KE1 ITDKLRGEINKVVNKYIDQGIAELVPGVLFVDEVHMLDIECFTYLHRALESSIAPIVIFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 ITDKLRGEINKVVNKYIDQGIAELVPGVLFVDEVHMLDIECFTYLHRALESSIAPIVIFA
220 230 240 250 260 270
340 350 360 370 380 390
pF1KE1 SNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQIIKIRAQTEGINISEEA
:::::::::::::::::::::::::::::::::::::::::::.
CCDS82 SNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQVP
280 290 300 310
400 410 420 430 440 450
pF1KE1 LNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISELFYDAKSSAKILADQ
>>CCDS42588.1 RUVBL2 gene_id:10856|Hs108|chr19 (463 aa)
initn: 1229 init1: 483 opt: 747 Z-score: 844.1 bits: 165.5 E(32554): 1.1e-40
Smith-Waterman score: 1267; 43.0% identity (73.9% similar) in 456 aa overlap (2-455:9-451)
10 20 30 40 50
pF1KE1 MKIEEVKSTTKTQRIASHSHVKGLGLDESGLAKQAASGLVGQENAREACGVIV
:. :....:. .::..:::..:::::.. .::..:.::: ::.: ::..
CCDS42 MATVTATTKVPEIRDVTRIERIGAHSHIRGLGLDDALEPRQASQGMVGQLAARRAAGVVL
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE1 ELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVLM
:.:. :.::::::.:: :::::::.:...:: :: .:: ..:::..: :..:::.:
CCDS42 EMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALT
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE1 ENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLD
. :::.::.:::: :. ::::.:. . . : : :. ... . :::.. :
CCDS42 QAFRRSIGVRIKEETEIIEGEVVEI---QIDRPATGTGSKVGK--LTLKTTEMETIYDLG
130 140 150 160 170
180 190 200 210 220 230
pF1KE1 PSIFESLQKERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEE--YVPLPKGDVHKK
...::: :..:.::::: :. .: ... :: : : ..: . . .: : :...:.
CCDS42 TKMIESLTKDKVQAGDVITIDKATGKISKLGRSFTRARDYDAMGSQTKFVQCPDGELQKR
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE1 KEIIQDVTLHDLDVANARPQGGQDILSMMGQLMKPKKTEITDKLRGEINKVVNKYIDQGI
::... :.::..:: :.: :: .:. :.. :: ...: .:: : .. ..:
CCDS42 KEVVHTVSLHEIDVINSRTQG---FLA----LFSGDTGEIKSEVREQINAKVAEWREEGK
240 250 260 270 280
300 310 320 330 340 350
pF1KE1 AELVPGVLFVDEVHMLDIECFTYLHRALESSIAPIVIFASNRGNCVIRGTEDITSPHGIP
::..:::::.::::::::: :..:.:::::..::..:.:.::: :::: . ::::::
CCDS42 AEIIPGVLFIDEVHMLDIESFSFLNRALESDMAPVLIMATNRGITRIRGT-SYQSPHGIP
290 300 310 320 330 340
360 370 380 390 400 410
pF1KE1 LDLLDRVMIIRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLT
.:::::..:. : :. .. :::..:: . : ...::.: . : .:: .:.:::..::.:
CCDS42 IDLLDRLLIVSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLIT
350 360 370 380 390 400
420 430 440 450
pF1KE1 PANLLAKINGKDSIEKEHVEEISELFYDAKSSAKILADQQDKYMK
:.:. . .. . .... :: : . :.. . . :: ..
CCDS42 AASLVCRKRKGTEVQVDDIKRVYSLFLDESRSTQYMKEYQDAFLFNELKGETMDTS
410 420 430 440 450 460
456 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 01:38:38 2016 done: Mon Nov 7 01:38:39 2016
Total Scan time: 2.670 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]