Result of FASTA (ccds) for
pFN21AE1122
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1122, 433 aa
1>>>pF1KE1122 433 - 433 aa - 433 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.4204+/-0.000793; mu= 5.0214+/- 0.048
mean_var=191.0458+/-38.785, 0's: 0 Z-trim(115.4): 18 B-trim: 163 in 2/51
Lambda= 0.092791
statistics sampled from 15983 (15999) to 15983 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.798), E-opt: 0.2 (0.491), width: 16
Scan time: 3.790
The best scores are: opt bits E(32554)
CCDS1112.1 RUSC1 gene_id:23623|Hs108|chr1 ( 433) 2914 402.0 6.1e-112
CCDS41412.1 RUSC1 gene_id:23623|Hs108|chr1 ( 492) 2914 402.0 6.7e-112
CCDS41410.1 RUSC1 gene_id:23623|Hs108|chr1 ( 902) 2914 402.2 1.1e-111
CCDS41411.1 RUSC1 gene_id:23623|Hs108|chr1 ( 796) 1229 176.6 7.9e-44
CCDS35008.1 RUSC2 gene_id:9853|Hs108|chr9 (1516) 655 99.9 1.8e-20
>>CCDS1112.1 RUSC1 gene_id:23623|Hs108|chr1 (433 aa)
initn: 2914 init1: 2914 opt: 2914 Z-score: 2123.2 bits: 402.0 E(32554): 6.1e-112
Smith-Waterman score: 2914; 100.0% identity (100.0% similar) in 433 aa overlap (1-433:1-433)
10 20 30 40 50 60
pF1KE1 MAEAQSGTGQLQEQKKGLLIAVSVSVDKIISHFGAARNLVQKAQLGDSRLSPDVGHLVLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MAEAQSGTGQLQEQKKGLLIAVSVSVDKIISHFGAARNLVQKAQLGDSRLSPDVGHLVLT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 TLCPALHALVADGLKPFRKDLITGQRRSSPWSVVEASVKPGSSTRSLGTLYSQVSRLAPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 TLCPALHALVADGLKPFRKDLITGQRRSSPWSVVEASVKPGSSTRSLGTLYSQVSRLAPL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 SSSRSRFHAFILGLLNTKQLELWFSSLQEDAGLLSLLYLPTGFFSLARGGCPSLSTELLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SSSRSRFHAFILGLLNTKQLELWFSSLQEDAGLLSLLYLPTGFFSLARGGCPSLSTELLL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 LLQPLSVLTFHLDLLFEHHHHLPLGPPQAPAPPGPPPALQQTMQAMLHFGGRLAQSLRGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LLQPLSVLTFHLDLLFEHHHHLPLGPPQAPAPPGPPPALQQTMQAMLHFGGRLAQSLRGT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 SKEAASDPSDSPNLPTPGSWWEQLTQASRVYASGGTEGFPLSRWAPGRHGTAAEEGAQER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SKEAASDPSDSPNLPTPGSWWEQLTQASRVYASGGTEGFPLSRWAPGRHGTAAEEGAQER
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 PLPTDEMAPGRGLWLGRLFGVPGGPAENENGALKSRRPSSWLPPTVSVLALVKRGAPPEM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PLPTDEMAPGRGLWLGRLFGVPGGPAENENGALKSRRPSSWLPPTVSVLALVKRGAPPEM
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE1 PSPQELEASAPRMVQTHRAVRALCDHTAARPDQLSFRRGEVLRVITTVDEDWLRCGRDGM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PSPQELEASAPRMVQTHRAVRALCDHTAARPDQLSFRRGEVLRVITTVDEDWLRCGRDGM
370 380 390 400 410 420
430
pF1KE1 EGLVPVGYTSLVL
:::::::::::::
CCDS11 EGLVPVGYTSLVL
430
>>CCDS41412.1 RUSC1 gene_id:23623|Hs108|chr1 (492 aa)
initn: 2914 init1: 2914 opt: 2914 Z-score: 2122.4 bits: 402.0 E(32554): 6.7e-112
Smith-Waterman score: 2914; 100.0% identity (100.0% similar) in 433 aa overlap (1-433:60-492)
10 20 30
pF1KE1 MAEAQSGTGQLQEQKKGLLIAVSVSVDKII
::::::::::::::::::::::::::::::
CCDS41 SSPALQALAGQAGVRSSWSFAGVPGAQRLWMAEAQSGTGQLQEQKKGLLIAVSVSVDKII
30 40 50 60 70 80
40 50 60 70 80 90
pF1KE1 SHFGAARNLVQKAQLGDSRLSPDVGHLVLTTLCPALHALVADGLKPFRKDLITGQRRSSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 SHFGAARNLVQKAQLGDSRLSPDVGHLVLTTLCPALHALVADGLKPFRKDLITGQRRSSP
90 100 110 120 130 140
100 110 120 130 140 150
pF1KE1 WSVVEASVKPGSSTRSLGTLYSQVSRLAPLSSSRSRFHAFILGLLNTKQLELWFSSLQED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 WSVVEASVKPGSSTRSLGTLYSQVSRLAPLSSSRSRFHAFILGLLNTKQLELWFSSLQED
150 160 170 180 190 200
160 170 180 190 200 210
pF1KE1 AGLLSLLYLPTGFFSLARGGCPSLSTELLLLLQPLSVLTFHLDLLFEHHHHLPLGPPQAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 AGLLSLLYLPTGFFSLARGGCPSLSTELLLLLQPLSVLTFHLDLLFEHHHHLPLGPPQAP
210 220 230 240 250 260
220 230 240 250 260 270
pF1KE1 APPGPPPALQQTMQAMLHFGGRLAQSLRGTSKEAASDPSDSPNLPTPGSWWEQLTQASRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 APPGPPPALQQTMQAMLHFGGRLAQSLRGTSKEAASDPSDSPNLPTPGSWWEQLTQASRV
270 280 290 300 310 320
280 290 300 310 320 330
pF1KE1 YASGGTEGFPLSRWAPGRHGTAAEEGAQERPLPTDEMAPGRGLWLGRLFGVPGGPAENEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 YASGGTEGFPLSRWAPGRHGTAAEEGAQERPLPTDEMAPGRGLWLGRLFGVPGGPAENEN
330 340 350 360 370 380
340 350 360 370 380 390
pF1KE1 GALKSRRPSSWLPPTVSVLALVKRGAPPEMPSPQELEASAPRMVQTHRAVRALCDHTAAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 GALKSRRPSSWLPPTVSVLALVKRGAPPEMPSPQELEASAPRMVQTHRAVRALCDHTAAR
390 400 410 420 430 440
400 410 420 430
pF1KE1 PDQLSFRRGEVLRVITTVDEDWLRCGRDGMEGLVPVGYTSLVL
:::::::::::::::::::::::::::::::::::::::::::
CCDS41 PDQLSFRRGEVLRVITTVDEDWLRCGRDGMEGLVPVGYTSLVL
450 460 470 480 490
>>CCDS41410.1 RUSC1 gene_id:23623|Hs108|chr1 (902 aa)
initn: 2914 init1: 2914 opt: 2914 Z-score: 2118.7 bits: 402.2 E(32554): 1.1e-111
Smith-Waterman score: 2914; 100.0% identity (100.0% similar) in 433 aa overlap (1-433:470-902)
10 20 30
pF1KE1 MAEAQSGTGQLQEQKKGLLIAVSVSVDKII
::::::::::::::::::::::::::::::
CCDS41 PAAKEPGAQAGLEVRSSWSFAGVPGAQRLWMAEAQSGTGQLQEQKKGLLIAVSVSVDKII
440 450 460 470 480 490
40 50 60 70 80 90
pF1KE1 SHFGAARNLVQKAQLGDSRLSPDVGHLVLTTLCPALHALVADGLKPFRKDLITGQRRSSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 SHFGAARNLVQKAQLGDSRLSPDVGHLVLTTLCPALHALVADGLKPFRKDLITGQRRSSP
500 510 520 530 540 550
100 110 120 130 140 150
pF1KE1 WSVVEASVKPGSSTRSLGTLYSQVSRLAPLSSSRSRFHAFILGLLNTKQLELWFSSLQED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 WSVVEASVKPGSSTRSLGTLYSQVSRLAPLSSSRSRFHAFILGLLNTKQLELWFSSLQED
560 570 580 590 600 610
160 170 180 190 200 210
pF1KE1 AGLLSLLYLPTGFFSLARGGCPSLSTELLLLLQPLSVLTFHLDLLFEHHHHLPLGPPQAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 AGLLSLLYLPTGFFSLARGGCPSLSTELLLLLQPLSVLTFHLDLLFEHHHHLPLGPPQAP
620 630 640 650 660 670
220 230 240 250 260 270
pF1KE1 APPGPPPALQQTMQAMLHFGGRLAQSLRGTSKEAASDPSDSPNLPTPGSWWEQLTQASRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 APPGPPPALQQTMQAMLHFGGRLAQSLRGTSKEAASDPSDSPNLPTPGSWWEQLTQASRV
680 690 700 710 720 730
280 290 300 310 320 330
pF1KE1 YASGGTEGFPLSRWAPGRHGTAAEEGAQERPLPTDEMAPGRGLWLGRLFGVPGGPAENEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 YASGGTEGFPLSRWAPGRHGTAAEEGAQERPLPTDEMAPGRGLWLGRLFGVPGGPAENEN
740 750 760 770 780 790
340 350 360 370 380 390
pF1KE1 GALKSRRPSSWLPPTVSVLALVKRGAPPEMPSPQELEASAPRMVQTHRAVRALCDHTAAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 GALKSRRPSSWLPPTVSVLALVKRGAPPEMPSPQELEASAPRMVQTHRAVRALCDHTAAR
800 810 820 830 840 850
400 410 420 430
pF1KE1 PDQLSFRRGEVLRVITTVDEDWLRCGRDGMEGLVPVGYTSLVL
:::::::::::::::::::::::::::::::::::::::::::
CCDS41 PDQLSFRRGEVLRVITTVDEDWLRCGRDGMEGLVPVGYTSLVL
860 870 880 890 900
>>CCDS41411.1 RUSC1 gene_id:23623|Hs108|chr1 (796 aa)
initn: 1277 init1: 1225 opt: 1229 Z-score: 900.4 bits: 176.6 E(32554): 7.9e-44
Smith-Waterman score: 1962; 75.5% identity (75.5% similar) in 433 aa overlap (1-433:470-796)
10 20 30
pF1KE1 MAEAQSGTGQLQEQKKGLLIAVSVSVDKII
::::::::::::::::::::::::::::::
CCDS41 PAAKEPGAQAGLEVRSSWSFAGVPGAQRLWMAEAQSGTGQLQEQKKGLLIAVSVSVDKII
440 450 460 470 480 490
40 50 60 70 80 90
pF1KE1 SHFGAARNLVQKAQLGDSRLSPDVGHLVLTTLCPALHALVADGLKPFRKDLITGQRRSSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 SHFGAARNLVQKAQLGDSRLSPDVGHLVLTTLCPALHALVADGLKPFRKDLITGQRRSSP
500 510 520 530 540 550
100 110 120 130 140 150
pF1KE1 WSVVEASVKPGSSTRSLGTLYSQVSRLAPLSSSRSRFHAFILGLLNTKQLELWFSSLQED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 WSVVEASVKPGSSTRSLGTLYSQVSRLAPLSSSRSRFHAFILGLLNTKQLELWFSSLQED
560 570 580 590 600 610
160 170 180 190 200 210
pF1KE1 AGLLSLLYLPTGFFSLARGGCPSLSTELLLLLQPLSVLTFHLDLLFEHHHHLPLGPPQAP
::
CCDS41 AG----------------------------------------------------------
620
220 230 240 250 260 270
pF1KE1 APPGPPPALQQTMQAMLHFGGRLAQSLRGTSKEAASDPSDSPNLPTPGSWWEQLTQASRV
::::::::::::
CCDS41 ------------------------------------------------SWWEQLTQASRV
630
280 290 300 310 320 330
pF1KE1 YASGGTEGFPLSRWAPGRHGTAAEEGAQERPLPTDEMAPGRGLWLGRLFGVPGGPAENEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 YASGGTEGFPLSRWAPGRHGTAAEEGAQERPLPTDEMAPGRGLWLGRLFGVPGGPAENEN
640 650 660 670 680 690
340 350 360 370 380 390
pF1KE1 GALKSRRPSSWLPPTVSVLALVKRGAPPEMPSPQELEASAPRMVQTHRAVRALCDHTAAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 GALKSRRPSSWLPPTVSVLALVKRGAPPEMPSPQELEASAPRMVQTHRAVRALCDHTAAR
700 710 720 730 740 750
400 410 420 430
pF1KE1 PDQLSFRRGEVLRVITTVDEDWLRCGRDGMEGLVPVGYTSLVL
:::::::::::::::::::::::::::::::::::::::::::
CCDS41 PDQLSFRRGEVLRVITTVDEDWLRCGRDGMEGLVPVGYTSLVL
760 770 780 790
>>CCDS35008.1 RUSC2 gene_id:9853|Hs108|chr9 (1516 aa)
initn: 943 init1: 655 opt: 655 Z-score: 481.2 bits: 99.9 E(32554): 1.8e-20
Smith-Waterman score: 725; 39.8% identity (58.4% similar) in 399 aa overlap (14-371:992-1379)
10 20 30 40
pF1KE1 MAEAQSGTGQLQEQKKGLLIAVSVSVDKIISHFGAARNLVQKA
:::::. ::...:: :..:::..:. ::
CCDS35 QDPFSLTEKPPAEFCLSPDGSSEAISIDLLQKKGLVKAVNIAVDLIVAHFGTSRDPGVKA
970 980 990 1000 1010 1020
50 60 70 80 90 100
pF1KE1 QLGDSRLSPDVGHLVLTTLCPALHALVADGLKPFRKDLITGQRRSSPWSVVEASVKPGSS
.::.: .::.:::::: ::::..:.. :::: : :.: :::.. ::::::::.. : :
CCDS35 KLGNSSVSPNVGHLVLKYLCPAVRAVLEDGLKAFVLDVIIGQRKNMPWSVVEASTQLGPS
1030 1040 1050 1060 1070 1080
110 120 130 140 150 160
pF1KE1 TRSLGTLYSQVSRLAPLSSSRSRFHAFILGLLNTKQLELWFSSLQEDAGLLSLLYLPTGF
:. : ::..::.. :.: ::.:::::::: ..::.::. : . ... : : ::
CCDS35 TKVLHGLYNKVSQFPELTSHTMRFNAFILGLLNIRSLEFWFNHLYNHEDIIQTHYQPWGF
1090 1100 1110 1120 1130 1140
170 180 190
pF1KE1 FSLARGGCPSLSTELLLLLQPLSVLTFHLDLLFEH-------------------------
.: :. ::.: :::::::::..: : :::::.:
CCDS35 LSAAHTVCPGLFEELLLLLQPLALLPFSLDLLFQHRLLQSGQQQRQHKELLRVSQDLLLS
1150 1160 1170 1180 1190 1200
200 210 220 230 240 250
pF1KE1 -HHHLPLGPPQAPAPPGPPPALQQTMQAM---LHFGGRLAQSLRGTSKEA-ASDPSDSPN
: : :. .. :: : .. ::. . . : . : :. :
CCDS35 AHSTLQLARARGQEGPGDVDRAAQGERVKGVGASEGGEEEEEEEETEEVAEAAGGSGRAR
1210 1220 1230 1240 1250 1260
260 270 280 290 300
pF1KE1 LPTPGS--WWEQLTQASRVYASGGTEGFPLSRWAPGRHGTAAEE--GAQERPLPTDEMAP
:. :: :: :.:.:: .:. :: ::. : ....:. :: : . :
CCDS35 WARGGQAGWWYQLMQSSQVYIDGSIEG---SRFPRGSSNSSSEKKKGAGGGGPP--QAPP
1270 1280 1290 1300 1310
310 320 330 340 350 360
pF1KE1 GRGLWLGRLFGVPGGPAENENGALKSRRP-SSWL--PPTVSVLALVKRGAPPEMP--SPQ
: : . :. . :: .: :: .: :. :: :::: ..:. : : ::
CCDS35 PR---EGVVEGAEACPASEE--ALGRERGWPFWMGSPPD-SVLAELRRSREREGPAASPA
1320 1330 1340 1350 1360 1370
370 380 390 400 410 420
pF1KE1 ELE--ASAPRMVQTHRAVRALCDHTAARPDQLSFRRGEVLRVITTVDEDWLRCGRDGMEG
: : :: :
CCDS35 ENEEGASEPSPGGIKWGHLFGSRKAQREARPTNRLPSDWLSLDKSMFQLVAQTVGSRREP
1380 1390 1400 1410 1420 1430
433 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 02:55:52 2016 done: Mon Nov 7 02:55:52 2016
Total Scan time: 3.790 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]