FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1121, 366 aa
  1>>>pF1KE1121 366 - 366 aa - 366 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7356+/-0.00072; mu= 14.3041+/- 0.043
 mean_var=70.2093+/-14.143, 0's: 0 Z-trim(109.3): 30  B-trim: 467 in 1/52
 Lambda= 0.153065
 statistics sampled from 10732 (10759) to 10732 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.707), E-opt: 0.2 (0.33), width:  16
 Scan time:  3.000

The best scores are:                                      opt bits E(32554)
CCDS1548.1 LEFTY1 gene_id:10637|Hs108|chr1         ( 366) 2517 564.6 4.6e-161
CCDS1549.1 LEFTY2 gene_id:7044|Hs108|chr1          ( 366) 2409 540.8  7e-154
CCDS53479.1 LEFTY2 gene_id:7044|Hs108|chr1         ( 332) 1631 369.0 3.3e-102


>>CCDS1548.1 LEFTY1 gene_id:10637|Hs108|chr1              (366 aa)
 initn: 2517 init1: 2517 opt: 2517  Z-score: 3005.1  bits: 564.6 E(32554): 4.6e-161
Smith-Waterman score: 2517; 100.0% identity (100.0% similar) in 366 aa overlap (1-366:1-366)

               10        20        30        40        50        60
pF1KE1 MQPLWLCWALWVLPLASPGAALTGEQLLGSLLRQLQLKEVPTLDRADMEELVIPTHVRAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 MQPLWLCWALWVLPLASPGAALTGEQLLGSLLRQLQLKEVPTLDRADMEELVIPTHVRAQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 YVALLQRSHGDRSRGKRFSQSFREVAGRFLALEASTHLLVFGMEQRLPPNSELVQAVLRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 YVALLQRSHGDRSRGKRFSQSFREVAGRFLALEASTHLLVFGMEQRLPPNSELVQAVLRL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 FQEPVPKAALHRHGRLSPRSARARVTVEWLRVRDDGSNRTSLIDSRLVSVHESGWKAFDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 FQEPVPKAALHRHGRLSPRSARARVTVEWLRVRDDGSNRTSLIDSRLVSVHESGWKAFDV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 TEAVNFWQQLSRPRQPLLLQVSVQREHLGPLASGAHKLVRFASQGAPAGLGEPQLELHTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 TEAVNFWQQLSRPRQPLLLQVSVQREHLGPLASGAHKLVRFASQGAPAGLGEPQLELHTL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 DLGDYGAQGDCDPEAPMTEGTRCCRQEMYIDLQGMKWAENWVLEPPGFLAYECVGTCRQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 DLGDYGAQGDCDPEAPMTEGTRCCRQEMYIDLQGMKWAENWVLEPPGFLAYECVGTCRQP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 PEALAFKWPFLGPRQCIASETDSLPMIVSIKEGGRTRPQVVSLPNMRVQKCSCASDGALV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 PEALAFKWPFLGPRQCIASETDSLPMIVSIKEGGRTRPQVVSLPNMRVQKCSCASDGALV
              310       320       330       340       350       360

             
pF1KE1 PRRLQP
       ::::::
CCDS15 PRRLQP
             

>>CCDS1549.1 LEFTY2 gene_id:7044|Hs108|chr1               (366 aa)
 initn: 2409 init1: 2409 opt: 2409  Z-score: 2876.2  bits: 540.8 E(32554): 7e-154
Smith-Waterman score: 2409; 95.6% identity (98.6% similar) in 366 aa overlap (1-366:1-366)

               10        20        30        40        50        60
pF1KE1 MQPLWLCWALWVLPLASPGAALTGEQLLGSLLRQLQLKEVPTLDRADMEELVIPTHVRAQ
       : ::::::::::::::.:::::: :::::::::::::.:::.:::::::.::::.:::::
CCDS15 MWPLWLCWALWVLPLAGPGAALTEEQLLGSLLRQLQLSEVPVLDRADMEKLVIPAHVRAQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 YVALLQRSHGDRSRGKRFSQSFREVAGRFLALEASTHLLVFGMEQRLPPNSELVQAVLRL
       ::.::.::::::::::::::::::::::::: ::::::::::::::::::::::::::::
CCDS15 YVVLLRRSHGDRSRGKRFSQSFREVAGRFLASEASTHLLVFGMEQRLPPNSELVQAVLRL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 FQEPVPKAALHRHGRLSPRSARARVTVEWLRVRDDGSNRTSLIDSRLVSVHESGWKAFDV
       :::::::::::::::::::::.::::::::::::::::::::::::::::::::::::::
CCDS15 FQEPVPKAALHRHGRLSPRSAQARVTVEWLRVRDDGSNRTSLIDSRLVSVHESGWKAFDV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 TEAVNFWQQLSRPRQPLLLQVSVQREHLGPLASGAHKLVRFASQGAPAGLGEPQLELHTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 TEAVNFWQQLSRPRQPLLLQVSVQREHLGPLASGAHKLVRFASQGAPAGLGEPQLELHTL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 DLGDYGAQGDCDPEAPMTEGTRCCRQEMYIDLQGMKWAENWVLEPPGFLAYECVGTCRQP
       :: :::::::::::::::::::::::::::::::::::.::::::::::::::::::.::
CCDS15 DLRDYGAQGDCDPEAPMTEGTRCCRQEMYIDLQGMKWAKNWVLEPPGFLAYECVGTCQQP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 PEALAFKWPFLGPRQCIASETDSLPMIVSIKEGGRTRPQVVSLPNMRVQKCSCASDGALV
       ::::::.:::::::::::::: ::::::::::::::::::::::::::::::::::::::
CCDS15 PEALAFNWPFLGPRQCIASETASLPMIVSIKEGGRTRPQVVSLPNMRVQKCSCASDGALV
              310       320       330       340       350       360

             
pF1KE1 PRRLQP
       ::::::
CCDS15 PRRLQP
             

>>CCDS53479.1 LEFTY2 gene_id:7044|Hs108|chr1              (332 aa)
 initn: 1631 init1: 1631 opt: 1631  Z-score: 1948.3  bits: 369.0 E(32554): 3.3e-102
Smith-Waterman score: 2109; 86.3% identity (89.3% similar) in 366 aa overlap (1-366:1-332)

               10        20        30        40        50        60
pF1KE1 MQPLWLCWALWVLPLASPGAALTGEQLLGSLLRQLQLKEVPTLDRADMEELVIPTHVRAQ
       : ::::::::::::::.:::::: :::::::::::::.:::.:::::::.::::.:::::
CCDS53 MWPLWLCWALWVLPLAGPGAALTEEQLLGSLLRQLQLSEVPVLDRADMEKLVIPAHVRAQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 YVALLQRSHGDRSRGKRFSQSFREVAGRFLALEASTHLLVFGMEQRLPPNSELVQAVLRL
       ::.::.::::::::::::::::::::::::: ::                          
CCDS53 YVVLLRRSHGDRSRGKRFSQSFREVAGRFLASEA--------------------------
               70        80        90                              

              130       140       150       160       170       180
pF1KE1 FQEPVPKAALHRHGRLSPRSARARVTVEWLRVRDDGSNRTSLIDSRLVSVHESGWKAFDV
               :::::::::::::.::::::::::::::::::::::::::::::::::::::
CCDS53 --------ALHRHGRLSPRSAQARVTVEWLRVRDDGSNRTSLIDSRLVSVHESGWKAFDV
                  100       110       120       130       140      

              190       200       210       220       230       240
pF1KE1 TEAVNFWQQLSRPRQPLLLQVSVQREHLGPLASGAHKLVRFASQGAPAGLGEPQLELHTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 TEAVNFWQQLSRPRQPLLLQVSVQREHLGPLASGAHKLVRFASQGAPAGLGEPQLELHTL
        150       160       170       180       190       200      

              250       260       270       280       290       300
pF1KE1 DLGDYGAQGDCDPEAPMTEGTRCCRQEMYIDLQGMKWAENWVLEPPGFLAYECVGTCRQP
       :: :::::::::::::::::::::::::::::::::::.::::::::::::::::::.::
CCDS53 DLRDYGAQGDCDPEAPMTEGTRCCRQEMYIDLQGMKWAKNWVLEPPGFLAYECVGTCQQP
        210       220       230       240       250       260      

              310       320       330       340       350       360
pF1KE1 PEALAFKWPFLGPRQCIASETDSLPMIVSIKEGGRTRPQVVSLPNMRVQKCSCASDGALV
       ::::::.:::::::::::::: ::::::::::::::::::::::::::::::::::::::
CCDS53 PEALAFNWPFLGPRQCIASETASLPMIVSIKEGGRTRPQVVSLPNMRVQKCSCASDGALV
        270       280       290       300       310       320      

             
pF1KE1 PRRLQP
       ::::::
CCDS53 PRRLQP
        330  




366 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 22:35:57 2016 done: Sun Nov  6 22:35:57 2016
 Total Scan time:  3.000 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]