Result of FASTA (omim) for
pFN21AE1117
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1117, 316 aa
1>>>pF1KE1117 316 - 316 aa - 316 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.8234+/-0.000335; mu= 20.0658+/- 0.021
mean_var=97.1024+/-20.519, 0's: 0 Z-trim(116.7): 180 B-trim: 1188 in 1/55
Lambda= 0.130155
statistics sampled from 27838 (28072) to 27838 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.703), E-opt: 0.2 (0.329), width: 16
Scan time: 7.830
The best scores are: opt bits E(85289)
NP_066306 (OMIM: 605968) ret finger protein-like 1 ( 317) 2164 416.4 3.8e-116
XP_011528600 (OMIM: 605968) PREDICTED: ret finger ( 288) 1968 379.6 4.3e-105
XP_011528601 (OMIM: 605968) PREDICTED: ret finger ( 288) 1968 379.6 4.3e-105
XP_016884390 (OMIM: 605968) PREDICTED: ret finger ( 288) 1968 379.6 4.3e-105
XP_016884391 (OMIM: 605968) PREDICTED: ret finger ( 288) 1968 379.6 4.3e-105
XP_016884389 (OMIM: 605968) PREDICTED: ret finger ( 288) 1968 379.6 4.3e-105
NP_001092005 (OMIM: 605970) ret finger protein-lik ( 317) 1966 379.2 5.9e-105
NP_006596 (OMIM: 605969) ret finger protein-like 2 ( 317) 1930 372.5 6.4e-103
NP_006595 (OMIM: 605970) ret finger protein-like 3 ( 288) 1779 344.1 2.1e-94
XP_011528134 (OMIM: 605969) PREDICTED: ret finger ( 378) 1762 341.0 2.3e-93
NP_001091997 (OMIM: 605969) ret finger protein-lik ( 378) 1762 341.0 2.3e-93
XP_011528129 (OMIM: 605969) PREDICTED: ret finger ( 416) 1762 341.1 2.4e-93
XP_011528128 (OMIM: 605969) PREDICTED: ret finger ( 416) 1762 341.1 2.4e-93
XP_011528132 (OMIM: 605969) PREDICTED: ret finger ( 416) 1762 341.1 2.4e-93
XP_011528130 (OMIM: 605969) PREDICTED: ret finger ( 416) 1762 341.1 2.4e-93
XP_016884024 (OMIM: 605969) PREDICTED: ret finger ( 288) 1749 338.4 1e-92
XP_016884025 (OMIM: 605969) PREDICTED: ret finger ( 288) 1749 338.4 1e-92
NP_001153017 (OMIM: 605969) ret finger protein-lik ( 288) 1749 338.4 1e-92
NP_001153018 (OMIM: 605969) ret finger protein-lik ( 288) 1749 338.4 1e-92
NP_001138486 (OMIM: 612601) ret finger protein-lik ( 287) 1150 226.0 7.4e-59
XP_011525217 (OMIM: 612601) PREDICTED: ret finger ( 344) 1150 226.0 8.3e-59
XP_016884023 (OMIM: 605970) PREDICTED: ret finger ( 168) 654 132.5 5.8e-31
XP_016878725 (OMIM: 134610,249100,608107) PREDICTE ( 780) 505 105.4 4e-22
NP_000234 (OMIM: 134610,249100,608107) pyrin isofo ( 781) 505 105.4 4e-22
NP_006501 (OMIM: 602165) zinc finger protein RFP [ ( 513) 495 103.3 1.1e-21
NP_008925 (OMIM: 613595) butyrophilin subfamily 3 ( 584) 495 103.3 1.2e-21
NP_001229732 (OMIM: 613595) butyrophilin subfamily ( 374) 485 101.2 3.4e-21
NP_932078 (OMIM: 613595) butyrophilin subfamily 3 ( 535) 486 101.6 3.7e-21
NP_003132 (OMIM: 109092) E3 ubiquitin-protein liga ( 475) 482 100.8 5.8e-21
XP_006715046 (OMIM: 613593) PREDICTED: butyrophili ( 419) 471 98.7 2.3e-20
NP_001138480 (OMIM: 613593) butyrophilin subfamily ( 461) 471 98.7 2.4e-20
XP_005248890 (OMIM: 613593) PREDICTED: butyrophili ( 506) 471 98.8 2.5e-20
NP_008979 (OMIM: 613593) butyrophilin subfamily 3 ( 513) 471 98.8 2.6e-20
XP_011542587 (OMIM: 607868) PREDICTED: E3 ubiquiti ( 391) 455 95.6 1.7e-19
XP_016857901 (OMIM: 607868) PREDICTED: E3 ubiquiti ( 467) 455 95.7 1.9e-19
NP_660215 (OMIM: 607868) E3 ubiquitin-protein liga ( 468) 455 95.7 1.9e-19
NP_001184162 (OMIM: 613590) butyrophilin subfamily ( 466) 454 95.5 2.2e-19
NP_008980 (OMIM: 613590) butyrophilin subfamily 2 ( 527) 454 95.6 2.4e-19
XP_011512533 (OMIM: 613591) PREDICTED: butyrophili ( 313) 450 94.6 2.9e-19
NP_001184168 (OMIM: 613591) butyrophilin subfamily ( 313) 450 94.6 2.9e-19
NP_742013 (OMIM: 605700) E3 ubiquitin-protein liga ( 488) 451 95.0 3.4e-19
NP_853509 (OMIM: 613591) butyrophilin subfamily 2 ( 407) 450 94.7 3.4e-19
XP_005248855 (OMIM: 613591) PREDICTED: butyrophili ( 407) 450 94.7 3.4e-19
XP_016865656 (OMIM: 613591) PREDICTED: butyrophili ( 407) 450 94.7 3.4e-19
NP_067076 (OMIM: 605700) E3 ubiquitin-protein liga ( 518) 451 95.0 3.5e-19
XP_016865655 (OMIM: 613591) PREDICTED: butyrophili ( 461) 450 94.8 3.7e-19
XP_011512531 (OMIM: 613591) PREDICTED: butyrophili ( 461) 450 94.8 3.7e-19
NP_008926 (OMIM: 613591) butyrophilin subfamily 2 ( 523) 450 94.8 4e-19
NP_001184166 (OMIM: 613591) butyrophilin subfamily ( 523) 450 94.8 4e-19
XP_005248854 (OMIM: 613591) PREDICTED: butyrophili ( 523) 450 94.8 4e-19
>>NP_066306 (OMIM: 605968) ret finger protein-like 1 [Ho (317 aa)
initn: 1254 init1: 1226 opt: 2164 Z-score: 2206.2 bits: 416.4 E(85289): 3.8e-116
Smith-Waterman score: 2164; 99.1% identity (99.1% similar) in 317 aa overlap (1-316:1-317)
10 20 30 40 50 60
pF1KE1 MKRLSLVTTNRLSPHGNFLPLCTFPLAVDMAALFQEASSCPVCSDYLEKPMSLECGCAVC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 MKRLSLVTTNRLSPHGNFLPLCTFPLAVDMAALFQEASSCPVCSDYLEKPMSLECGCAVC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 FKCINSLQKEPHGEDLLCCCCSMVSQKNKIRPSWQLERLASHIKELEPKLKKILQMNPRM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 FKCINSLQKEPHGEDLLCCCCSMVSQKNKIRPSWQLERLASHIKELEPKLKKILQMNPRM
70 80 90 100 110 120
130 140 150 160 170
pF1KE1 RKFQVDTTLDADTANNFL-ISDDLRSVRSGCITQNRQDLAERFDVSICILGSPRFTCGRH
:::::: ::::::::::: :::::::::::::::::::::::::::::::::::::::::
NP_066 RKFQVDMTLDADTANNFLLISDDLRSVRSGCITQNRQDLAERFDVSICILGSPRFTCGRH
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE1 YWEVDVGTSTEWDLGVCRESVHRKGRIHLTTERGFWTVSLRDGSRLSASTVPLTFLFVDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 YWEVDVGTSTEWDLGVCRESVHRKGRIHLTTERGFWTVSLRDGSRLSASTVPLTFLFVDR
190 200 210 220 230 240
240 250 260 270 280 290
pF1KE1 KLQRVGIFLDMGMQNVSFFDAEGGSHVYTFRSVSAEEPLHLFFAPPSPSNGDKSVLSICP
:::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::
NP_066 KLQRVGIFLDMGMQNVSFFDAEGGSHVYTFRSVSAEEPLHLFFAPPSPPNGDKSVLSICP
250 260 270 280 290 300
300 310
pF1KE1 VINPGTTDAPVHPGEAK
:::::::::::::::::
NP_066 VINPGTTDAPVHPGEAK
310
>>XP_011528600 (OMIM: 605968) PREDICTED: ret finger prot (288 aa)
initn: 1254 init1: 1226 opt: 1968 Z-score: 2007.7 bits: 379.6 E(85289): 4.3e-105
Smith-Waterman score: 1968; 99.0% identity (99.0% similar) in 288 aa overlap (30-316:1-288)
10 20 30 40 50 60
pF1KE1 MKRLSLVTTNRLSPHGNFLPLCTFPLAVDMAALFQEASSCPVCSDYLEKPMSLECGCAVC
:::::::::::::::::::::::::::::::
XP_011 MAALFQEASSCPVCSDYLEKPMSLECGCAVC
10 20 30
70 80 90 100 110 120
pF1KE1 FKCINSLQKEPHGEDLLCCCCSMVSQKNKIRPSWQLERLASHIKELEPKLKKILQMNPRM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FKCINSLQKEPHGEDLLCCCCSMVSQKNKIRPSWQLERLASHIKELEPKLKKILQMNPRM
40 50 60 70 80 90
130 140 150 160 170
pF1KE1 RKFQVDTTLDADTANNFL-ISDDLRSVRSGCITQNRQDLAERFDVSICILGSPRFTCGRH
:::::: ::::::::::: :::::::::::::::::::::::::::::::::::::::::
XP_011 RKFQVDMTLDADTANNFLLISDDLRSVRSGCITQNRQDLAERFDVSICILGSPRFTCGRH
100 110 120 130 140 150
180 190 200 210 220 230
pF1KE1 YWEVDVGTSTEWDLGVCRESVHRKGRIHLTTERGFWTVSLRDGSRLSASTVPLTFLFVDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YWEVDVGTSTEWDLGVCRESVHRKGRIHLTTERGFWTVSLRDGSRLSASTVPLTFLFVDR
160 170 180 190 200 210
240 250 260 270 280 290
pF1KE1 KLQRVGIFLDMGMQNVSFFDAEGGSHVYTFRSVSAEEPLHLFFAPPSPSNGDKSVLSICP
:::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::
XP_011 KLQRVGIFLDMGMQNVSFFDAEGGSHVYTFRSVSAEEPLHLFFAPPSPPNGDKSVLSICP
220 230 240 250 260 270
300 310
pF1KE1 VINPGTTDAPVHPGEAK
:::::::::::::::::
XP_011 VINPGTTDAPVHPGEAK
280
>>XP_011528601 (OMIM: 605968) PREDICTED: ret finger prot (288 aa)
initn: 1254 init1: 1226 opt: 1968 Z-score: 2007.7 bits: 379.6 E(85289): 4.3e-105
Smith-Waterman score: 1968; 99.0% identity (99.0% similar) in 288 aa overlap (30-316:1-288)
10 20 30 40 50 60
pF1KE1 MKRLSLVTTNRLSPHGNFLPLCTFPLAVDMAALFQEASSCPVCSDYLEKPMSLECGCAVC
:::::::::::::::::::::::::::::::
XP_011 MAALFQEASSCPVCSDYLEKPMSLECGCAVC
10 20 30
70 80 90 100 110 120
pF1KE1 FKCINSLQKEPHGEDLLCCCCSMVSQKNKIRPSWQLERLASHIKELEPKLKKILQMNPRM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FKCINSLQKEPHGEDLLCCCCSMVSQKNKIRPSWQLERLASHIKELEPKLKKILQMNPRM
40 50 60 70 80 90
130 140 150 160 170
pF1KE1 RKFQVDTTLDADTANNFL-ISDDLRSVRSGCITQNRQDLAERFDVSICILGSPRFTCGRH
:::::: ::::::::::: :::::::::::::::::::::::::::::::::::::::::
XP_011 RKFQVDMTLDADTANNFLLISDDLRSVRSGCITQNRQDLAERFDVSICILGSPRFTCGRH
100 110 120 130 140 150
180 190 200 210 220 230
pF1KE1 YWEVDVGTSTEWDLGVCRESVHRKGRIHLTTERGFWTVSLRDGSRLSASTVPLTFLFVDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YWEVDVGTSTEWDLGVCRESVHRKGRIHLTTERGFWTVSLRDGSRLSASTVPLTFLFVDR
160 170 180 190 200 210
240 250 260 270 280 290
pF1KE1 KLQRVGIFLDMGMQNVSFFDAEGGSHVYTFRSVSAEEPLHLFFAPPSPSNGDKSVLSICP
:::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::
XP_011 KLQRVGIFLDMGMQNVSFFDAEGGSHVYTFRSVSAEEPLHLFFAPPSPPNGDKSVLSICP
220 230 240 250 260 270
300 310
pF1KE1 VINPGTTDAPVHPGEAK
:::::::::::::::::
XP_011 VINPGTTDAPVHPGEAK
280
>>XP_016884390 (OMIM: 605968) PREDICTED: ret finger prot (288 aa)
initn: 1254 init1: 1226 opt: 1968 Z-score: 2007.7 bits: 379.6 E(85289): 4.3e-105
Smith-Waterman score: 1968; 99.0% identity (99.0% similar) in 288 aa overlap (30-316:1-288)
10 20 30 40 50 60
pF1KE1 MKRLSLVTTNRLSPHGNFLPLCTFPLAVDMAALFQEASSCPVCSDYLEKPMSLECGCAVC
:::::::::::::::::::::::::::::::
XP_016 MAALFQEASSCPVCSDYLEKPMSLECGCAVC
10 20 30
70 80 90 100 110 120
pF1KE1 FKCINSLQKEPHGEDLLCCCCSMVSQKNKIRPSWQLERLASHIKELEPKLKKILQMNPRM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FKCINSLQKEPHGEDLLCCCCSMVSQKNKIRPSWQLERLASHIKELEPKLKKILQMNPRM
40 50 60 70 80 90
130 140 150 160 170
pF1KE1 RKFQVDTTLDADTANNFL-ISDDLRSVRSGCITQNRQDLAERFDVSICILGSPRFTCGRH
:::::: ::::::::::: :::::::::::::::::::::::::::::::::::::::::
XP_016 RKFQVDMTLDADTANNFLLISDDLRSVRSGCITQNRQDLAERFDVSICILGSPRFTCGRH
100 110 120 130 140 150
180 190 200 210 220 230
pF1KE1 YWEVDVGTSTEWDLGVCRESVHRKGRIHLTTERGFWTVSLRDGSRLSASTVPLTFLFVDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YWEVDVGTSTEWDLGVCRESVHRKGRIHLTTERGFWTVSLRDGSRLSASTVPLTFLFVDR
160 170 180 190 200 210
240 250 260 270 280 290
pF1KE1 KLQRVGIFLDMGMQNVSFFDAEGGSHVYTFRSVSAEEPLHLFFAPPSPSNGDKSVLSICP
:::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::
XP_016 KLQRVGIFLDMGMQNVSFFDAEGGSHVYTFRSVSAEEPLHLFFAPPSPPNGDKSVLSICP
220 230 240 250 260 270
300 310
pF1KE1 VINPGTTDAPVHPGEAK
:::::::::::::::::
XP_016 VINPGTTDAPVHPGEAK
280
>>XP_016884391 (OMIM: 605968) PREDICTED: ret finger prot (288 aa)
initn: 1254 init1: 1226 opt: 1968 Z-score: 2007.7 bits: 379.6 E(85289): 4.3e-105
Smith-Waterman score: 1968; 99.0% identity (99.0% similar) in 288 aa overlap (30-316:1-288)
10 20 30 40 50 60
pF1KE1 MKRLSLVTTNRLSPHGNFLPLCTFPLAVDMAALFQEASSCPVCSDYLEKPMSLECGCAVC
:::::::::::::::::::::::::::::::
XP_016 MAALFQEASSCPVCSDYLEKPMSLECGCAVC
10 20 30
70 80 90 100 110 120
pF1KE1 FKCINSLQKEPHGEDLLCCCCSMVSQKNKIRPSWQLERLASHIKELEPKLKKILQMNPRM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FKCINSLQKEPHGEDLLCCCCSMVSQKNKIRPSWQLERLASHIKELEPKLKKILQMNPRM
40 50 60 70 80 90
130 140 150 160 170
pF1KE1 RKFQVDTTLDADTANNFL-ISDDLRSVRSGCITQNRQDLAERFDVSICILGSPRFTCGRH
:::::: ::::::::::: :::::::::::::::::::::::::::::::::::::::::
XP_016 RKFQVDMTLDADTANNFLLISDDLRSVRSGCITQNRQDLAERFDVSICILGSPRFTCGRH
100 110 120 130 140 150
180 190 200 210 220 230
pF1KE1 YWEVDVGTSTEWDLGVCRESVHRKGRIHLTTERGFWTVSLRDGSRLSASTVPLTFLFVDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YWEVDVGTSTEWDLGVCRESVHRKGRIHLTTERGFWTVSLRDGSRLSASTVPLTFLFVDR
160 170 180 190 200 210
240 250 260 270 280 290
pF1KE1 KLQRVGIFLDMGMQNVSFFDAEGGSHVYTFRSVSAEEPLHLFFAPPSPSNGDKSVLSICP
:::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::
XP_016 KLQRVGIFLDMGMQNVSFFDAEGGSHVYTFRSVSAEEPLHLFFAPPSPPNGDKSVLSICP
220 230 240 250 260 270
300 310
pF1KE1 VINPGTTDAPVHPGEAK
:::::::::::::::::
XP_016 VINPGTTDAPVHPGEAK
280
>>XP_016884389 (OMIM: 605968) PREDICTED: ret finger prot (288 aa)
initn: 1254 init1: 1226 opt: 1968 Z-score: 2007.7 bits: 379.6 E(85289): 4.3e-105
Smith-Waterman score: 1968; 99.0% identity (99.0% similar) in 288 aa overlap (30-316:1-288)
10 20 30 40 50 60
pF1KE1 MKRLSLVTTNRLSPHGNFLPLCTFPLAVDMAALFQEASSCPVCSDYLEKPMSLECGCAVC
:::::::::::::::::::::::::::::::
XP_016 MAALFQEASSCPVCSDYLEKPMSLECGCAVC
10 20 30
70 80 90 100 110 120
pF1KE1 FKCINSLQKEPHGEDLLCCCCSMVSQKNKIRPSWQLERLASHIKELEPKLKKILQMNPRM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FKCINSLQKEPHGEDLLCCCCSMVSQKNKIRPSWQLERLASHIKELEPKLKKILQMNPRM
40 50 60 70 80 90
130 140 150 160 170
pF1KE1 RKFQVDTTLDADTANNFL-ISDDLRSVRSGCITQNRQDLAERFDVSICILGSPRFTCGRH
:::::: ::::::::::: :::::::::::::::::::::::::::::::::::::::::
XP_016 RKFQVDMTLDADTANNFLLISDDLRSVRSGCITQNRQDLAERFDVSICILGSPRFTCGRH
100 110 120 130 140 150
180 190 200 210 220 230
pF1KE1 YWEVDVGTSTEWDLGVCRESVHRKGRIHLTTERGFWTVSLRDGSRLSASTVPLTFLFVDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YWEVDVGTSTEWDLGVCRESVHRKGRIHLTTERGFWTVSLRDGSRLSASTVPLTFLFVDR
160 170 180 190 200 210
240 250 260 270 280 290
pF1KE1 KLQRVGIFLDMGMQNVSFFDAEGGSHVYTFRSVSAEEPLHLFFAPPSPSNGDKSVLSICP
:::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::
XP_016 KLQRVGIFLDMGMQNVSFFDAEGGSHVYTFRSVSAEEPLHLFFAPPSPPNGDKSVLSICP
220 230 240 250 260 270
300 310
pF1KE1 VINPGTTDAPVHPGEAK
:::::::::::::::::
XP_016 VINPGTTDAPVHPGEAK
280
>>NP_001092005 (OMIM: 605970) ret finger protein-like 3 (317 aa)
initn: 1079 init1: 1079 opt: 1966 Z-score: 2005.2 bits: 379.2 E(85289): 5.9e-105
Smith-Waterman score: 1966; 90.9% identity (96.5% similar) in 317 aa overlap (1-316:1-317)
10 20 30 40 50 60
pF1KE1 MKRLSLVTTNRLSPHGNFLPLCTFPLAVDMAALFQEASSCPVCSDYLEKPMSLECGCAVC
::::::::::::::.::::::::::::::::::::::::::::::::::::::::::.::
NP_001 MKRLSLVTTNRLSPQGNFLPLCTFPLAVDMAALFQEASSCPVCSDYLEKPMSLECGCTVC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 FKCINSLQKEPHGEDLLCCCCSMVSQKNKIRPSWQLERLASHIKELEPKLKKILQMNPRM
.:::::::::::::::::::::::::.:::::. :::::.::::::::::::::::::::
NP_001 LKCINSLQKEPHGEDLLCCCCSMVSQRNKIRPNRQLERLVSHIKELEPKLKKILQMNPRM
70 80 90 100 110 120
130 140 150 160 170
pF1KE1 RKFQVDTTLDADTANNFL-ISDDLRSVRSGCITQNRQDLAERFDVSICILGSPRFTCGRH
:::::: ::::::::::: ::::::::::: :::::::::::::::.:::::::::::::
NP_001 RKFQVDMTLDADTANNFLLISDDLRSVRSGLITQNRQDLAERFDVSVCILGSPRFTCGRH
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE1 YWEVDVGTSTEWDLGVCRESVHRKGRIHLTTERGFWTVSLRDGSRLSASTVPLTFLFVDR
:::::::::::::::::::::: ::.:.:::: :::::::::::::::::::::::.:::
NP_001 YWEVDVGTSTEWDLGVCRESVHCKGKIQLTTELGFWTVSLRDGSRLSASTVPLTFLLVDR
190 200 210 220 230 240
240 250 260 270 280 290
pF1KE1 KLQRVGIFLDMGMQNVSFFDAEGGSHVYTFRSVSAEEPLHLFFAPPSPSNGDKSVLSICP
::::::::::::::::::::::.::::::::::::::::. :.:: : :::..::::::
NP_001 KLQRVGIFLDMGMQNVSFFDAESGSHVYTFRSVSAEEPLRPFLAPSIPPNGDQGVLSICP
250 260 270 280 290 300
300 310
pF1KE1 VINPGTTDAPVHPGEAK
..: :::::::.:::::
NP_001 LMNSGTTDAPVRPGEAK
310
>>NP_006596 (OMIM: 605969) ret finger protein-like 2 iso (317 aa)
initn: 1075 init1: 1075 opt: 1930 Z-score: 1968.7 bits: 372.5 E(85289): 6.4e-103
Smith-Waterman score: 1930; 89.9% identity (95.3% similar) in 317 aa overlap (1-316:1-317)
10 20 30 40 50 60
pF1KE1 MKRLSLVTTNRLSPHGNFLPLCTFPLAVDMAALFQEASSCPVCSDYLEKPMSLECGCAVC
::::::::::::::::::. ::::::::::::::::::::::::::::::::::::::::
NP_006 MKRLSLVTTNRLSPHGNFFTLCTFPLAVDMAALFQEASSCPVCSDYLEKPMSLECGCAVC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 FKCINSLQKEPHGEDLLCCCCSMVSQKNKIRPSWQLERLASHIKELEPKLKKILQMNPRM
.::::::::::::::::::: ::::.::::: . ::::::::::::::::::::::::::
NP_006 LKCINSLQKEPHGEDLLCCCSSMVSRKNKIRRNRQLERLASHIKELEPKLKKILQMNPRM
70 80 90 100 110 120
130 140 150 160 170
pF1KE1 RKFQVDTTLDADTANNFL-ISDDLRSVRSGCITQNRQDLAERFDVSICILGSPRFTCGRH
:::::: ::::.:::::: ::::::::::: : :::::::::::::.:::::::::::::
NP_006 RKFQVDMTLDANTANNFLLISDDLRSVRSGRIRQNRQDLAERFDVSVCILGSPRFTCGRH
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE1 YWEVDVGTSTEWDLGVCRESVHRKGRIHLTTERGFWTVSLRDGSRLSASTVPLTFLFVDR
::::::::::::::::::::::::::.:::: ::::::::::.::::.:::::::::::
NP_006 CWEVDVGTSTEWDLGVCRESVHRKGRIQLTTELGFWTVSLRDGGRLSATTVPLTFLFVDR
190 200 210 220 230 240
240 250 260 270 280 290
pF1KE1 KLQRVGIFLDMGMQNVSFFDAEGGSHVYTFRSVSAEEPLHLFFAPPSPSNGDKSVLSICP
::::::::::::::::::::::.::::::::::::::::. :.:: : :::..::::::
NP_006 KLQRVGIFLDMGMQNVSFFDAESGSHVYTFRSVSAEEPLRPFLAPSVPPNGDQGVLSICP
250 260 270 280 290 300
300 310
pF1KE1 VINPGTTDAPVHPGEAK
..: :::::::.:::::
NP_006 LMNSGTTDAPVRPGEAK
310
>>NP_006595 (OMIM: 605970) ret finger protein-like 3 iso (288 aa)
initn: 1079 init1: 1079 opt: 1779 Z-score: 1815.9 bits: 344.1 E(85289): 2.1e-94
Smith-Waterman score: 1779; 90.3% identity (96.2% similar) in 288 aa overlap (30-316:1-288)
10 20 30 40 50 60
pF1KE1 MKRLSLVTTNRLSPHGNFLPLCTFPLAVDMAALFQEASSCPVCSDYLEKPMSLECGCAVC
::::::::::::::::::::::::::::.::
NP_006 MAALFQEASSCPVCSDYLEKPMSLECGCTVC
10 20 30
70 80 90 100 110 120
pF1KE1 FKCINSLQKEPHGEDLLCCCCSMVSQKNKIRPSWQLERLASHIKELEPKLKKILQMNPRM
.:::::::::::::::::::::::::.:::::. :::::.::::::::::::::::::::
NP_006 LKCINSLQKEPHGEDLLCCCCSMVSQRNKIRPNRQLERLVSHIKELEPKLKKILQMNPRM
40 50 60 70 80 90
130 140 150 160 170
pF1KE1 RKFQVDTTLDADTANNFL-ISDDLRSVRSGCITQNRQDLAERFDVSICILGSPRFTCGRH
:::::: ::::::::::: ::::::::::: :::::::::::::::.:::::::::::::
NP_006 RKFQVDMTLDADTANNFLLISDDLRSVRSGLITQNRQDLAERFDVSVCILGSPRFTCGRH
100 110 120 130 140 150
180 190 200 210 220 230
pF1KE1 YWEVDVGTSTEWDLGVCRESVHRKGRIHLTTERGFWTVSLRDGSRLSASTVPLTFLFVDR
:::::::::::::::::::::: ::.:.:::: :::::::::::::::::::::::.:::
NP_006 YWEVDVGTSTEWDLGVCRESVHCKGKIQLTTELGFWTVSLRDGSRLSASTVPLTFLLVDR
160 170 180 190 200 210
240 250 260 270 280 290
pF1KE1 KLQRVGIFLDMGMQNVSFFDAEGGSHVYTFRSVSAEEPLHLFFAPPSPSNGDKSVLSICP
::::::::::::::::::::::.::::::::::::::::. :.:: : :::..::::::
NP_006 KLQRVGIFLDMGMQNVSFFDAESGSHVYTFRSVSAEEPLRPFLAPSIPPNGDQGVLSICP
220 230 240 250 260 270
300 310
pF1KE1 VINPGTTDAPVHPGEAK
..: :::::::.:::::
NP_006 LMNSGTTDAPVRPGEAK
280
>>XP_011528134 (OMIM: 605969) PREDICTED: ret finger prot (378 aa)
initn: 1075 init1: 1075 opt: 1762 Z-score: 1797.3 bits: 341.0 E(85289): 2.3e-93
Smith-Waterman score: 1762; 89.7% identity (95.2% similar) in 290 aa overlap (28-316:89-378)
10 20 30 40 50
pF1KE1 MKRLSLVTTNRLSPHGNFLPLCTFPLAVDMAALFQEASSCPVCSDYLEKPMSLECGC
::::::::::::::::::::::::::::::
XP_011 TNKRPSCAPSPQDLSAQWKQLEDRGASSRRVDMAALFQEASSCPVCSDYLEKPMSLECGC
60 70 80 90 100 110
60 70 80 90 100 110
pF1KE1 AVCFKCINSLQKEPHGEDLLCCCCSMVSQKNKIRPSWQLERLASHIKELEPKLKKILQMN
:::.::::::::::::::::::: ::::.::::: . :::::::::::::::::::::::
XP_011 AVCLKCINSLQKEPHGEDLLCCCSSMVSRKNKIRRNRQLERLASHIKELEPKLKKILQMN
120 130 140 150 160 170
120 130 140 150 160 170
pF1KE1 PRMRKFQVDTTLDADTANNFL-ISDDLRSVRSGCITQNRQDLAERFDVSICILGSPRFTC
::::::::: ::::.:::::: ::::::::::: : :::::::::::::.::::::::::
XP_011 PRMRKFQVDMTLDANTANNFLLISDDLRSVRSGRIRQNRQDLAERFDVSVCILGSPRFTC
180 190 200 210 220 230
180 190 200 210 220 230
pF1KE1 GRHYWEVDVGTSTEWDLGVCRESVHRKGRIHLTTERGFWTVSLRDGSRLSASTVPLTFLF
::: ::::::::::::::::::::::::::.:::: ::::::::::.::::.::::::::
XP_011 GRHCWEVDVGTSTEWDLGVCRESVHRKGRIQLTTELGFWTVSLRDGGRLSATTVPLTFLF
240 250 260 270 280 290
240 250 260 270 280 290
pF1KE1 VDRKLQRVGIFLDMGMQNVSFFDAEGGSHVYTFRSVSAEEPLHLFFAPPSPSNGDKSVLS
:::::::::::::::::::::::::.::::::::::::::::. :.:: : :::..:::
XP_011 VDRKLQRVGIFLDMGMQNVSFFDAESGSHVYTFRSVSAEEPLRPFLAPSVPPNGDQGVLS
300 310 320 330 340 350
300 310
pF1KE1 ICPVINPGTTDAPVHPGEAK
:::..: :::::::.:::::
XP_011 ICPLMNSGTTDAPVRPGEAK
360 370
316 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 03:39:48 2016 done: Mon Nov 7 03:39:49 2016
Total Scan time: 7.830 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]