FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1114, 160 aa
  1>>>pF1KE1114 160 - 160 aa - 160 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4715+/-0.000587; mu= 12.9125+/- 0.036
 mean_var=87.6567+/-17.170, 0's: 0 Z-trim(114.7): 11  B-trim: 0 in 0/54
 Lambda= 0.136988
 statistics sampled from 15206 (15216) to 15206 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.815), E-opt: 0.2 (0.467), width:  16
 Scan time:  2.000

The best scores are:                                      opt bits E(32554)
CCDS75982.1 XAGE1B gene_id:653220|Hs108|chrX       (  81)  551 117.2 2.2e-27
CCDS48126.2 XAGE1E gene_id:653067|Hs108|chrX       (  81)  551 117.2 2.2e-27


>>CCDS75982.1 XAGE1B gene_id:653220|Hs108|chrX            (81 aa)
 initn: 551 init1: 551 opt: 551  Z-score: 605.0  bits: 117.2 E(32554): 2.2e-27
Smith-Waterman score: 551; 100.0% identity (100.0% similar) in 81 aa overlap (80-160:1-81)

      50        60        70        80        90       100         
pF1KE1 FWTPQTGPGEGRHERHTQTQNHTASPRSPVMESPKKKNQQLKVGILHLGSRQKKIRIQLR
                                     ::::::::::::::::::::::::::::::
CCDS75                               MESPKKKNQQLKVGILHLGSRQKKIRIQLR
                                             10        20        30

     110       120       130       140       150       160
pF1KE1 SQCATWKVICKSCISQTPGINLDLGSGVKVKIIPKEEHCKMPEAGEEQPQV
       :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 SQCATWKVICKSCISQTPGINLDLGSGVKVKIIPKEEHCKMPEAGEEQPQV
               40        50        60        70        80 

>>CCDS48126.2 XAGE1E gene_id:653067|Hs108|chrX            (81 aa)
 initn: 551 init1: 551 opt: 551  Z-score: 605.0  bits: 117.2 E(32554): 2.2e-27
Smith-Waterman score: 551; 100.0% identity (100.0% similar) in 81 aa overlap (80-160:1-81)

      50        60        70        80        90       100         
pF1KE1 FWTPQTGPGEGRHERHTQTQNHTASPRSPVMESPKKKNQQLKVGILHLGSRQKKIRIQLR
                                     ::::::::::::::::::::::::::::::
CCDS48                               MESPKKKNQQLKVGILHLGSRQKKIRIQLR
                                             10        20        30

     110       120       130       140       150       160
pF1KE1 SQCATWKVICKSCISQTPGINLDLGSGVKVKIIPKEEHCKMPEAGEEQPQV
       :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 SQCATWKVICKSCISQTPGINLDLGSGVKVKIIPKEEHCKMPEAGEEQPQV
               40        50        60        70        80 




160 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 10:50:27 2016 done: Sun Nov  6 10:50:28 2016
 Total Scan time:  2.000 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]