Result of FASTA (ccds) for
pFN21AE1112
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1112, 142 aa
1>>>pF1KE1112 142 - 142 aa - 142 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.5777+/-0.000838; mu= 9.1984+/- 0.050
mean_var=56.7323+/-11.320, 0's: 0 Z-trim(106.0): 14 B-trim: 0 in 0/52
Lambda= 0.170278
statistics sampled from 8729 (8743) to 8729 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.678), E-opt: 0.2 (0.269), width: 16
Scan time: 1.710
The best scores are: opt bits E(32554)
CCDS10398.1 HBA2 gene_id:3040|Hs108|chr16 ( 142) 925 235.2 1e-62
CCDS10399.1 HBA1 gene_id:3039|Hs108|chr16 ( 142) 925 235.2 1e-62
CCDS10400.1 HBQ1 gene_id:3049|Hs108|chr16 ( 142) 588 152.4 8.6e-38
CCDS10397.1 HBZ gene_id:3050|Hs108|chr16 ( 142) 563 146.3 6e-36
CCDS32347.1 HBM gene_id:3042|Hs108|chr16 ( 141) 430 113.6 4.1e-26
CCDS7753.1 HBB gene_id:3043|Hs108|chr11 ( 147) 381 101.6 1.8e-22
CCDS31376.1 HBD gene_id:3045|Hs108|chr11 ( 147) 373 99.6 7e-22
CCDS7755.1 HBG2 gene_id:3048|Hs108|chr11 ( 147) 366 97.9 2.3e-21
CCDS7754.1 HBG1 gene_id:3047|Hs108|chr11 ( 147) 363 97.2 3.9e-21
CCDS7756.1 HBE1 gene_id:3046|Hs108|chr11 ( 147) 332 89.5 7.5e-19
>>CCDS10398.1 HBA2 gene_id:3040|Hs108|chr16 (142 aa)
initn: 925 init1: 925 opt: 925 Z-score: 1239.4 bits: 235.2 E(32554): 1e-62
Smith-Waterman score: 925; 100.0% identity (100.0% similar) in 142 aa overlap (1-142:1-142)
10 20 30 40 50 60
pF1KE1 MVLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHFDLSHGSAQVKGHG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MVLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHFDLSHGSAQVKGHG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 KKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 KKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTP
70 80 90 100 110 120
130 140
pF1KE1 AVHASLDKFLASVSTVLTSKYR
::::::::::::::::::::::
CCDS10 AVHASLDKFLASVSTVLTSKYR
130 140
>>CCDS10399.1 HBA1 gene_id:3039|Hs108|chr16 (142 aa)
initn: 925 init1: 925 opt: 925 Z-score: 1239.4 bits: 235.2 E(32554): 1e-62
Smith-Waterman score: 925; 100.0% identity (100.0% similar) in 142 aa overlap (1-142:1-142)
10 20 30 40 50 60
pF1KE1 MVLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHFDLSHGSAQVKGHG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MVLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHFDLSHGSAQVKGHG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 KKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 KKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTP
70 80 90 100 110 120
130 140
pF1KE1 AVHASLDKFLASVSTVLTSKYR
::::::::::::::::::::::
CCDS10 AVHASLDKFLASVSTVLTSKYR
130 140
>>CCDS10400.1 HBQ1 gene_id:3049|Hs108|chr16 (142 aa)
initn: 588 init1: 588 opt: 588 Z-score: 792.0 bits: 152.4 E(32554): 8.6e-38
Smith-Waterman score: 588; 62.0% identity (87.3% similar) in 142 aa overlap (1-142:1-142)
10 20 30 40 50 60
pF1KE1 MVLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHFDLSHGSAQVKGHG
:.:: :.. :.: : :.:...: : .::::: ::.::.::::: :.::: ::.::..::
CCDS10 MALSAEDRALVRALWKKLGSNVGVYTTEALERTFLAFPATKTYFSHLDLSPGSSQVRAHG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 KKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTP
.::::::. :: ..::.:.:::::: ::: .:::::..:.::.:::::::: : :..:.:
CCDS10 QKVADALSLAVERLDDLPHALSALSHLHACQLRVDPASFQLLGHCLLVTLARHYPGDFSP
70 80 90 100 110 120
130 140
pF1KE1 AVHASLDKFLASVSTVLTSKYR
:..:::::::. : ..:.:.::
CCDS10 ALQASLDKFLSHVISALVSEYR
130 140
>>CCDS10397.1 HBZ gene_id:3050|Hs108|chr16 (142 aa)
initn: 563 init1: 563 opt: 563 Z-score: 758.8 bits: 146.3 E(32554): 6e-36
Smith-Waterman score: 563; 59.9% identity (83.1% similar) in 142 aa overlap (1-142:1-142)
10 20 30 40 50 60
pF1KE1 MVLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHFDLSHGSAQVKGHG
: :. ...: . . :.:....: :.:.:::.::: : :::::::::: ::::...::
CCDS10 MSLTKTERTIIVSMWAKISTQADTIGTETLERLFLSHPQTKTYFPHFDLHPGSAQLRAHG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 KKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTP
.::. :. .:: .::. .::: ::.:::. :::::::::::::::::::::..::.::
CCDS10 SKVVAAVGDAVKSIDDIGGALSKLSELHAYILRVDPVNFKLLSHCLLVTLAARFPADFTA
70 80 90 100 110 120
130 140
pF1KE1 AVHASLDKFLASVSTVLTSKYR
.::. ::::. ::.::: :::
CCDS10 EAHAAWDKFLSVVSSVLTEKYR
130 140
>>CCDS32347.1 HBM gene_id:3042|Hs108|chr16 (141 aa)
initn: 430 init1: 430 opt: 430 Z-score: 582.3 bits: 113.6 E(32554): 4.1e-26
Smith-Waterman score: 430; 45.4% identity (75.9% similar) in 141 aa overlap (2-142:1-141)
10 20 30 40 50 60
pF1KE1 MVLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHFDLSHGSAQVKGHG
.:: ..... .: ...: ...::: : :.: .:.::.::::.. . ..:. .::
CCDS32 MLSAQERAQIAQVWDLIAGHEAQFGAELLLRLFTVYPSTKVYFPHLSACQDATQLLSHG
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 KKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTP
... :. :: :::.. ::: :.:::: :::::.:: :: .:. :.::.:: :::
CCDS32 QRMLAAVGAAVQHVDNLRAALSPLADLHALVLRVDPANFPLLIQCFHVVLASHLQDEFTV
60 70 80 90 100 110
130 140
pF1KE1 AVHASLDKFLASVSTVLTSKYR
..:. ::::..:..::: :::
CCDS32 QMQAAWDKFLTGVAVVLTEKYR
120 130 140
>>CCDS7753.1 HBB gene_id:3043|Hs108|chr11 (147 aa)
initn: 325 init1: 273 opt: 381 Z-score: 516.9 bits: 101.6 E(32554): 1.8e-22
Smith-Waterman score: 381; 43.4% identity (74.5% similar) in 145 aa overlap (3-141:4-146)
10 20 30 40 50
pF1KE1 MVLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHF-DLS-----HGS
:.: .:. : : :::: .. : :.::: :... .: :. .: : ::: :.
CCDS77 MVHLTPEEKSAVTALWGKV--NVDEVGGEALGRLLVVYPWTQRFFESFGDLSTPDAVMGN
10 20 30 40 50
60 70 80 90 100 110
pF1KE1 AQVKGHGKKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAH
.::.::::: :.....::.:.. .....::.:: ::.::: ::.::.. :. .:: :
CCDS77 PKVKAHGKKVLGAFSDGLAHLDNLKGTFATLSELHCDKLHVDPENFRLLGNVLVCVLAHH
60 70 80 90 100 110
120 130 140
pF1KE1 LPAEFTPAVHASLDKFLASVSTVLTSKYR
. :::: :.:. .: .:.:...:. ::
CCDS77 FGKEFTPPVQAAYQKVVAGVANALAHKYH
120 130 140
>>CCDS31376.1 HBD gene_id:3045|Hs108|chr11 (147 aa)
initn: 305 init1: 263 opt: 373 Z-score: 506.3 bits: 99.6 E(32554): 7e-22
Smith-Waterman score: 373; 43.4% identity (74.5% similar) in 145 aa overlap (3-141:4-146)
10 20 30 40 50
pF1KE1 MVLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHF-DLSH-----GS
:.: .:: :.: ::::.. : :.::: :... .: :. .: : ::: :.
CCDS31 MVHLTPEEKTAVNALWGKVNVDA--VGGEALGRLLVVYPWTQRFFESFGDLSSPDAVMGN
10 20 30 40 50
60 70 80 90 100 110
pF1KE1 AQVKGHGKKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAH
.::.::::: :.....::.:.. ...: ::.:: ::.::: ::.::.. :. .:: .
CCDS31 PKVKAHGKKVLGAFSDGLAHLDNLKGTFSQLSELHCDKLHVDPENFRLLGNVLVCVLARN
60 70 80 90 100 110
120 130 140
pF1KE1 LPAEFTPAVHASLDKFLASVSTVLTSKYR
. :::: ..:. .: .:.:...:. ::
CCDS31 FGKEFTPQMQAAYQKVVAGVANALAHKYH
120 130 140
>>CCDS7755.1 HBG2 gene_id:3048|Hs108|chr11 (147 aa)
initn: 314 init1: 277 opt: 366 Z-score: 497.0 bits: 97.9 E(32554): 2.3e-21
Smith-Waterman score: 366; 41.4% identity (75.9% similar) in 145 aa overlap (3-141:4-146)
10 20 30 40 50
pF1KE1 MVLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHF-DLSHGSA----
.. ::... . ::::... . :.:.: :... .: :. .: : .:: .::
CCDS77 MGHFTEEDKATITSLWGKVNVE--DAGGETLGRLLVVYPWTQRFFDSFGNLSSASAIMGN
10 20 30 40 50
60 70 80 90 100 110
pF1KE1 -QVKGHGKKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAH
.::.::::: .: .:. :.::. .... ::.:: ::.::: :::::.. :...:: :
CCDS77 PKVKAHGKKVLTSLGDAIKHLDDLKGTFAQLSELHCDKLHVDPENFKLLGNVLVTVLAIH
60 70 80 90 100 110
120 130 140
pF1KE1 LPAEFTPAVHASLDKFLASVSTVLTSKYR
. :::: :.:: .:....:...:.:.:
CCDS77 FGKEFTPEVQASWQKMVTGVASALSSRYH
120 130 140
>>CCDS7754.1 HBG1 gene_id:3047|Hs108|chr11 (147 aa)
initn: 311 init1: 274 opt: 363 Z-score: 493.0 bits: 97.2 E(32554): 3.9e-21
Smith-Waterman score: 363; 41.4% identity (75.9% similar) in 145 aa overlap (3-141:4-146)
10 20 30 40 50
pF1KE1 MVLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHF-DLSHGSA----
.. ::... . ::::... . :.:.: :... .: :. .: : .:: .::
CCDS77 MGHFTEEDKATITSLWGKVNVE--DAGGETLGRLLVVYPWTQRFFDSFGNLSSASAIMGN
10 20 30 40 50
60 70 80 90 100 110
pF1KE1 -QVKGHGKKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAH
.::.::::: .: .:. :.::. .... ::.:: ::.::: :::::.. :...:: :
CCDS77 PKVKAHGKKVLTSLGDATKHLDDLKGTFAQLSELHCDKLHVDPENFKLLGNVLVTVLAIH
60 70 80 90 100 110
120 130 140
pF1KE1 LPAEFTPAVHASLDKFLASVSTVLTSKYR
. :::: :.:: .:....:...:.:.:
CCDS77 FGKEFTPEVQASWQKMVTAVASALSSRYH
120 130 140
>>CCDS7756.1 HBE1 gene_id:3046|Hs108|chr11 (147 aa)
initn: 264 init1: 264 opt: 332 Z-score: 451.9 bits: 89.5 E(32554): 7.5e-19
Smith-Waterman score: 332; 38.6% identity (72.4% similar) in 145 aa overlap (3-141:4-146)
10 20 30 40 50
pF1KE1 MVLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHF-DLSHGSA----
.. .:. : . :.:.... : :.::: :... .: :. .: : .:: ::
CCDS77 MVHFTAEEKAAVTSLWSKMNVE--EAGGEALGRLLVVYPWTQRFFDSFGNLSSPSAILGN
10 20 30 40 50
60 70 80 90 100 110
pF1KE1 -QVKGHGKKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAH
.::.::::: .. .:. ..:.. :.. ::.:: ::.::: :::::.. ... ::.:
CCDS77 PKVKAHGKKVLTSFGDAIKNMDNLKPAFAKLSELHCDKLHVDPENFKLLGNVMVIILATH
60 70 80 90 100 110
120 130 140
pF1KE1 LPAEFTPAVHASLDKFLASVSTVLTSKYR
. :::: :.:. .:....:. .:. ::
CCDS77 FGKEFTPEVQAAWQKLVSAVAIALAHKYH
120 130 140
142 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 02:19:00 2016 done: Mon Nov 7 02:19:00 2016
Total Scan time: 1.710 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]