FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1104, 161 aa
  1>>>pF1KE1104 161 - 161 aa - 161 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9569+/-0.000262; mu= 14.3400+/- 0.016
 mean_var=62.2924+/-12.570, 0's: 0 Z-trim(120.9): 2  B-trim: 1536 in 1/54
 Lambda= 0.162501
 statistics sampled from 36668 (36671) to 36668 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.809), E-opt: 0.2 (0.43), width:  16
 Scan time:  6.180

The best scores are:                                      opt bits E(85289)
NP_001092691 (OMIM: 612663) TRAF-interacting prote ( 161) 1088 262.5 2.1e-70
NP_443096 (OMIM: 609028) TRAF-interacting protein  ( 184)  189 51.8 6.5e-07


>>NP_001092691 (OMIM: 612663) TRAF-interacting protein w  (161 aa)
 initn: 1088 init1: 1088 opt: 1088  Z-score: 1385.0  bits: 262.5 E(85289): 2.1e-70
Smith-Waterman score: 1088; 100.0% identity (100.0% similar) in 161 aa overlap (1-161:1-161)

               10        20        30        40        50        60
pF1KE1 MEKPLTVLRVSLYHPTLGPSAFANVPPRLQHDTSPLLLGRGQDAHLQLQLPRLSRRHLSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MEKPLTVLRVSLYHPTLGPSAFANVPPRLQHDTSPLLLGRGQDAHLQLQLPRLSRRHLSL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 EPYLEKGSALLAFCLKALSRKGCVWVNGLTLRYLEQVPLSTVNRVSFSGIQMLVRVEEGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EPYLEKGSALLAFCLKALSRKGCVWVNGLTLRYLEQVPLSTVNRVSFSGIQMLVRVEEGT
               70        80        90       100       110       120

              130       140       150       160 
pF1KE1 SLEAFVCYFHVSPSPLIYRPEAEETDEWEGISQGQPPPGSG
       :::::::::::::::::::::::::::::::::::::::::
NP_001 SLEAFVCYFHVSPSPLIYRPEAEETDEWEGISQGQPPPGSG
              130       140       150       160 

>>NP_443096 (OMIM: 609028) TRAF-interacting protein with  (184 aa)
 initn: 194 init1: 142 opt: 189  Z-score: 245.1  bits: 51.8 E(85289): 6.5e-07
Smith-Waterman score: 189; 30.7% identity (62.9% similar) in 140 aa overlap (2-137:10-149)

                       10         20         30         40         
pF1KE1         MEKPLTVLRVSLYHP-TLGPSAFANVP-PRLQHDTSPLL-LGRGQDA-HLQL
                :. .: :....:::  :  . : ..   : .  .: .. .::...  :  .
NP_443 MTSFEDADTEETVTCLQMTVYHPGQLQCGIFQSISFNREKLPSSEVVKFGRNSNICHYTF
               10        20        30        40        50        60

       50        60        70        80        90       100        
pF1KE1 QLPRLSRRHLSLEPYLEKGSALLAFCLKALSRKGCVWVNGLTLRYLEQVPLSTVNRVSFS
       :  ..:: ..::. . . .:..:.: .: .:.:  . :..  : ::... :     : :.
NP_443 QDKQVSRVQFSLQLFKKFNSSVLSFEIKNMSKKTNLIVDSRELGYLNKMDLPYRCMVRFG
               70        80        90       100       110       120

      110       120       130       140       150       160        
pF1KE1 GIQMLVRVEEGTSLEAFVCYFHVSPSPLIYRPEAEETDEWEGISQGQPPPGSG       
         :.:.. :.: ::: :   : .::  :.                               
NP_443 EYQFLMEKEDGESLEFFETQFILSPRSLLQENNWPPHRPIPEYGTYSLCSSQSSSPTEMD
              130       140       150       160       170       180




161 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 04:03:17 2016 done: Mon Nov  7 04:03:18 2016
 Total Scan time:  6.180 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]