FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1104, 161 aa
  1>>>pF1KE1104 161 - 161 aa - 161 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0986+/-0.000538; mu= 13.4471+/- 0.033
 mean_var=62.7017+/-12.581, 0's: 0 Z-trim(113.7): 4  B-trim: 0 in 0/52
 Lambda= 0.161970
 statistics sampled from 14289 (14291) to 14289 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.814), E-opt: 0.2 (0.439), width:  16
 Scan time:  2.110

The best scores are:                                      opt bits E(32554)
CCDS43365.1 TIFAB gene_id:497189|Hs108|chr5        ( 161) 1088 261.7 1.4e-70


>>CCDS43365.1 TIFAB gene_id:497189|Hs108|chr5             (161 aa)
 initn: 1088 init1: 1088 opt: 1088  Z-score: 1380.7  bits: 261.7 E(32554): 1.4e-70
Smith-Waterman score: 1088; 100.0% identity (100.0% similar) in 161 aa overlap (1-161:1-161)

               10        20        30        40        50        60
pF1KE1 MEKPLTVLRVSLYHPTLGPSAFANVPPRLQHDTSPLLLGRGQDAHLQLQLPRLSRRHLSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MEKPLTVLRVSLYHPTLGPSAFANVPPRLQHDTSPLLLGRGQDAHLQLQLPRLSRRHLSL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 EPYLEKGSALLAFCLKALSRKGCVWVNGLTLRYLEQVPLSTVNRVSFSGIQMLVRVEEGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 EPYLEKGSALLAFCLKALSRKGCVWVNGLTLRYLEQVPLSTVNRVSFSGIQMLVRVEEGT
               70        80        90       100       110       120

              130       140       150       160 
pF1KE1 SLEAFVCYFHVSPSPLIYRPEAEETDEWEGISQGQPPPGSG
       :::::::::::::::::::::::::::::::::::::::::
CCDS43 SLEAFVCYFHVSPSPLIYRPEAEETDEWEGISQGQPPPGSG
              130       140       150       160 




161 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 04:03:16 2016 done: Mon Nov  7 04:03:17 2016
 Total Scan time:  2.110 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]