FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1103, 137 aa
  1>>>pF1KE1103 137 - 137 aa - 137 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.0196+/-0.000647; mu= 1.4734+/- 0.040
 mean_var=157.1616+/-32.142, 0's: 0 Z-trim(117.6): 2  B-trim: 647 in 1/53
 Lambda= 0.102306
 statistics sampled from 18366 (18368) to 18366 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.859), E-opt: 0.2 (0.564), width:  16
 Scan time:  2.110

The best scores are:                                      opt bits E(32554)
CCDS76853.1 INO80E gene_id:283899|Hs108|chr16      ( 205)  872 138.6 1.7e-33
CCDS10665.1 INO80E gene_id:283899|Hs108|chr16      ( 244)  872 138.7   2e-33


>>CCDS76853.1 INO80E gene_id:283899|Hs108|chr16           (205 aa)
 initn: 872 init1: 872 opt: 872  Z-score: 714.8  bits: 138.6 E(32554): 1.7e-33
Smith-Waterman score: 872; 100.0% identity (100.0% similar) in 132 aa overlap (1-132:1-132)

               10        20        30        40        50        60
pF1KE1 MNGPADGEVDYKKKYRNLKRKLKFLIYEHECFQEELRKAQRKLLKVSRDKSFLLDRLLQY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 MNGPADGEVDYKKKYRNLKRKLKFLIYEHECFQEELRKAQRKLLKVSRDKSFLLDRLLQY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 ENVDEDSSDSDATASSDNSETEGTPKLSDTPAPKRKRSPPLGGAPSPSSLSLPPSTGFPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 ENVDEDSSDSDATASSDNSETEGTPKLSDTPAPKRKRSPPLGGAPSPSSLSLPPSTGFPL
               70        80        90       100       110       120

              130                                                  
pF1KE1 QASGVPSPYLSSERGQA                                           
       ::::::::::::                                                
CCDS76 QASGVPSPYLSSMAVGPPDCPVGGPLTFPGRGSGAGVGTTLTPLPPPKMPPPTILSTVPR
              130       140       150       160       170       180

>>CCDS10665.1 INO80E gene_id:283899|Hs108|chr16           (244 aa)
 initn: 872 init1: 872 opt: 872  Z-score: 713.7  bits: 138.7 E(32554): 2e-33
Smith-Waterman score: 872; 100.0% identity (100.0% similar) in 132 aa overlap (1-132:1-132)

               10        20        30        40        50        60
pF1KE1 MNGPADGEVDYKKKYRNLKRKLKFLIYEHECFQEELRKAQRKLLKVSRDKSFLLDRLLQY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MNGPADGEVDYKKKYRNLKRKLKFLIYEHECFQEELRKAQRKLLKVSRDKSFLLDRLLQY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 ENVDEDSSDSDATASSDNSETEGTPKLSDTPAPKRKRSPPLGGAPSPSSLSLPPSTGFPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 ENVDEDSSDSDATASSDNSETEGTPKLSDTPAPKRKRSPPLGGAPSPSSLSLPPSTGFPL
               70        80        90       100       110       120

              130                                                  
pF1KE1 QASGVPSPYLSSERGQA                                           
       ::::::::::::                                                
CCDS10 QASGVPSPYLSSLASSRYPPFPSDYLALQLPEPSPLRPKREKRPRLPRKLKMAVGPPDCP
              130       140       150       160       170       180




137 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 04:11:11 2016 done: Mon Nov  7 04:11:11 2016
 Total Scan time:  2.110 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]