FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1101, 71 aa
  1>>>pF1KE1101 71 - 71 aa - 71 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0844+/-0.000506; mu= 8.4840+/- 0.031
 mean_var=56.6506+/-11.003, 0's: 0 Z-trim(113.8): 1  B-trim: 0 in 0/52
 Lambda= 0.170401
 statistics sampled from 14426 (14427) to 14426 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.826), E-opt: 0.2 (0.443), width:  16
 Scan time:  1.320

The best scores are:                                      opt bits E(32554)
CCDS10016.1 SNURF gene_id:8926|Hs108|chr15         (  71)  470 122.4 2.3e-29


>>CCDS10016.1 SNURF gene_id:8926|Hs108|chr15              (71 aa)
 initn: 470 init1: 470 opt: 470  Z-score: 640.7  bits: 122.4 E(32554): 2.3e-29
Smith-Waterman score: 470; 100.0% identity (100.0% similar) in 71 aa overlap (1-71:1-71)

               10        20        30        40        50        60
pF1KE1 MERARDRLHLRRTTEQHVPEVEVQVKRRRTASLSNQECQLYPRRSQQQQVPVVDFQAELR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MERARDRLHLRRTTEQHVPEVEVQVKRRRTASLSNQECQLYPRRSQQQQVPVVDFQAELR
               10        20        30        40        50        60

               70 
pF1KE1 QAFLAETPRGG
       :::::::::::
CCDS10 QAFLAETPRGG
               70 




71 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 21:28:56 2016 done: Sun Nov  6 21:28:56 2016
 Total Scan time:  1.320 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]