FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1017, 473 aa
  1>>>pF1KE1017 473 - 473 aa - 473 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 12.3708+/-0.000957; mu= -12.4793+/- 0.056
 mean_var=587.4810+/-149.433, 0's: 0 Z-trim(117.2): 45  B-trim: 959 in 1/54
 Lambda= 0.052915
 statistics sampled from 17832 (17877) to 17832 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.825), E-opt: 0.2 (0.549), width:  16
 Scan time:  3.120

The best scores are:                                      opt bits E(32554)
CCDS4780.1 ZBTB9 gene_id:221504|Hs108|chr6         ( 473) 3301 266.6   4e-71


>>CCDS4780.1 ZBTB9 gene_id:221504|Hs108|chr6              (473 aa)
 initn: 3301 init1: 3301 opt: 3301  Z-score: 1390.3  bits: 266.6 E(32554): 4e-71
Smith-Waterman score: 3301; 100.0% identity (100.0% similar) in 473 aa overlap (1-473:1-473)

               10        20        30        40        50        60
pF1KE1 METPTPLPPVPASPTCNPAPRTIQIEFPQHSSSLLESLNRHRLEGKFCDVSLLVQGRELR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 METPTPLPPVPASPTCNPAPRTIQIEFPQHSSSLLESLNRHRLEGKFCDVSLLVQGRELR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 AHKAVLAAASPYFHDKLLLGDAPRLTLPSVIEADAFEGLLQLIYSGRLRLPLDALPAHLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 AHKAVLAAASPYFHDKLLLGDAPRLTLPSVIEADAFEGLLQLIYSGRLRLPLDALPAHLL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 VASGLQMWQVVDQCSEILRELETSGGGISARGGNSYHALLSTTSSTGGWCIRSSPFQTPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 VASGLQMWQVVDQCSEILRELETSGGGISARGGNSYHALLSTTSSTGGWCIRSSPFQTPV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 QSSASTESPASTESPVGGEGSELGEVLQIQVEEEEEEEEDDDDEDQGSATLSQTPQPQRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 QSSASTESPASTESPVGGEGSELGEVLQIQVEEEEEEEEDDDDEDQGSATLSQTPQPQRV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 SGVFPRPHGPHPLPMTATPRKLPEGESAPLELPAPPALPPKIFYIKQEPFEPKEEISGSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 SGVFPRPHGPHPLPMTATPRKLPEGESAPLELPAPPALPPKIFYIKQEPFEPKEEISGSG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 TQPGGAKEETKVFSGGDTEGNGELGFLLPSGPGPTSGGGGPSWKPVDLHGNEILSGGGGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 TQPGGAKEETKVFSGGDTEGNGELGFLLPSGPGPTSGGGGPSWKPVDLHGNEILSGGGGP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 GGAGQAVHGPVKLGGTPPADGKRFGCLCGKRFAVKPKRDRHIMLTFSLRPFGCGICNKRF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 GGAGQAVHGPVKLGGTPPADGKRFGCLCGKRFAVKPKRDRHIMLTFSLRPFGCGICNKRF
              370       380       390       400       410       420

              430       440       450       460       470   
pF1KE1 KLKHHLTEHMKTHAGALHACPHCGRRFRVHACFLRHRDLCKGQGWATAHWTYK
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 KLKHHLTEHMKTHAGALHACPHCGRRFRVHACFLRHRDLCKGQGWATAHWTYK
              430       440       450       460       470   




473 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 20:17:37 2016 done: Sun Nov  6 20:17:38 2016
 Total Scan time:  3.120 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]