FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0979, 574 aa
  1>>>pF1KE0979 574 - 574 aa - 574 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.8384+/-0.00137; mu= -8.7944+/- 0.078
 mean_var=335.3640+/-78.144, 0's: 0 Z-trim(105.4): 92  B-trim: 0 in 0/51
 Lambda= 0.070035
 statistics sampled from 8339 (8383) to 8339 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.621), E-opt: 0.2 (0.258), width:  16
 Scan time:  3.420

The best scores are:                                      opt bits E(32554)
CCDS734.1 CDC7 gene_id:8317|Hs108|chr1             ( 574) 3775 396.5 4.8e-110


>>CCDS734.1 CDC7 gene_id:8317|Hs108|chr1                  (574 aa)
 initn: 3775 init1: 3775 opt: 3775  Z-score: 2089.2  bits: 396.5 E(32554): 4.8e-110
Smith-Waterman score: 3775; 100.0% identity (100.0% similar) in 574 aa overlap (1-574:1-574)

               10        20        30        40        50        60
pF1KE0 MEASLGIQMDEPMAFSPQRDRFQAEGSLKKNEQNFKLAGVKKDIEKLYEAVPQLSNVFKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MEASLGIQMDEPMAFSPQRDRFQAEGSLKKNEQNFKLAGVKKDIEKLYEAVPQLSNVFKI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 EDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTSHPIRIAAELQCLTVAGGQDNVMGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 EDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTSHPIRIAAELQCLTVAGGQDNVMGV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 KYCFRKNDHVVIAMPYLEHESFLDILNSLSFQEVREYMLNLFKALKRIHQFGIVHRDVKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 KYCFRKNDHVVIAMPYLEHESFLDILNSLSFQEVREYMLNLFKALKRIHQFGIVHRDVKP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 SNFLYNRRLKKYALVDFGLAQGTHDTKIELLKFVQSEAQQERCSQNKSHIITGNKIPLSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 SNFLYNRRLKKYALVDFGLAQGTHDTKIELLKFVQSEAQQERCSQNKSHIITGNKIPLSG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 PVPKELDQQSTTKASVKRPYTNAQIQIKQGKDGKEGSVGLSVQRSVFGERNFNIHSSISH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 PVPKELDQQSTTKASVKRPYTNAQIQIKQGKDGKEGSVGLSVQRSVFGERNFNIHSSISH
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 ESPAVKLMKQSKTVDVLSRKLATKKKAISTKVMNSAVMRKTASSCPASLTCDCYATDKVC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 ESPAVKLMKQSKTVDVLSRKLATKKKAISTKVMNSAVMRKTASSCPASLTCDCYATDKVC
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE0 SICLSRRQQVAPRAGTPGFRAPEVLTKCPNQTTAIDMWSAGVIFLSLLSGRYPFYKASDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 SICLSRRQQVAPRAGTPGFRAPEVLTKCPNQTTAIDMWSAGVIFLSLLSGRYPFYKASDD
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE0 LTALAQIMTIRGSRETIQAAKTFGKSILCSKEVPAQDLRKLCERLRGMDSSTPKLTSDIQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 LTALAQIMTIRGSRETIQAAKTFGKSILCSKEVPAQDLRKLCERLRGMDSSTPKLTSDIQ
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE0 GHASHQPAISEKTDHKASCLVQTPPGQYSGNSFKKGDSNSCEHCFDEYNTNLEGWNEVPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 GHASHQPAISEKTDHKASCLVQTPPGQYSGNSFKKGDSNSCEHCFDEYNTNLEGWNEVPD
              490       500       510       520       530       540

              550       560       570    
pF1KE0 EAYDLLDKLLDLNPASRITAEEALLHPFFKDMSL
       ::::::::::::::::::::::::::::::::::
CCDS73 EAYDLLDKLLDLNPASRITAEEALLHPFFKDMSL
              550       560       570    




574 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 21:01:22 2016 done: Sun Nov  6 21:01:22 2016
 Total Scan time:  3.420 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]