Result of FASTA (omim) for
pFN21AE0912
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0912, 246 aa
1>>>pF1KE0912 246 - 246 aa - 246 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0441+/-0.000338; mu= 17.6397+/- 0.021
mean_var=109.9648+/-22.626, 0's: 0 Z-trim(117.3): 153 B-trim: 0 in 0/58
Lambda= 0.122306
statistics sampled from 28876 (29111) to 28876 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.729), E-opt: 0.2 (0.341), width: 16
Scan time: 5.710
The best scores are: opt bits E(85289)
NP_031400 (OMIM: 206900,212550,606326) homeobox pr ( 246) 1643 300.2 2.3e-81
NP_005404 (OMIM: 157170,269160,603714) homeobox pr ( 332) 1367 251.6 1.2e-66
XP_005264157 (OMIM: 604994) PREDICTED: homeobox pr ( 293) 960 179.7 4.8e-45
NP_058628 (OMIM: 604994) homeobox protein SIX2 [Ho ( 291) 956 179.0 7.8e-45
NP_005973 (OMIM: 113650,601205,605192,608389) home ( 284) 933 175.0 1.3e-43
XP_016877091 (OMIM: 113650,601205,605192,608389) P ( 173) 815 153.9 1.7e-37
XP_005267816 (OMIM: 606342) PREDICTED: homeobox pr ( 773) 774 147.5 6.6e-35
NP_059116 (OMIM: 606342) homeobox protein SIX4 [Ho ( 781) 774 147.5 6.6e-35
NP_787071 (OMIM: 600963,610896) homeobox protein S ( 739) 691 132.8 1.6e-30
XP_006720592 (OMIM: 601740) PREDICTED: homeobox pr ( 255) 169 40.1 0.0046
NP_758526 (OMIM: 601740) homeobox protein Meis2 is ( 388) 169 40.3 0.0059
XP_006720587 (OMIM: 601740) PREDICTED: homeobox pr ( 400) 169 40.3 0.006
NP_733777 (OMIM: 601740) homeobox protein Meis2 is ( 401) 169 40.3 0.006
NP_758527 (OMIM: 601740) homeobox protein Meis2 is ( 306) 167 39.8 0.0065
XP_016877694 (OMIM: 601740) PREDICTED: homeobox pr ( 306) 167 39.8 0.0065
XP_016859635 (OMIM: 601739) PREDICTED: homeobox pr ( 246) 165 39.4 0.0073
NP_002390 (OMIM: 601740) homeobox protein Meis2 is ( 381) 167 40.0 0.0074
XP_006720588 (OMIM: 601740) PREDICTED: homeobox pr ( 393) 167 40.0 0.0076
NP_733774 (OMIM: 601740) homeobox protein Meis2 is ( 394) 167 40.0 0.0076
XP_011519893 (OMIM: 601740) PREDICTED: homeobox pr ( 331) 166 39.7 0.0077
XP_006720590 (OMIM: 601740) PREDICTED: homeobox pr ( 331) 166 39.7 0.0077
XP_016882818 (OMIM: 608127) PREDICTED: pre-B-cell ( 209) 163 38.9 0.0084
NP_733776 (OMIM: 601740) homeobox protein Meis2 is ( 470) 167 40.1 0.0085
NP_001207411 (OMIM: 601740) homeobox protein Meis2 ( 470) 167 40.1 0.0085
XP_006720589 (OMIM: 601740) PREDICTED: homeobox pr ( 389) 166 39.8 0.0085
XP_016859633 (OMIM: 601739) PREDICTED: homeobox pr ( 321) 165 39.5 0.0086
XP_016859634 (OMIM: 601739) PREDICTED: homeobox pr ( 321) 165 39.5 0.0086
XP_005264382 (OMIM: 601739) PREDICTED: homeobox pr ( 325) 165 39.5 0.0086
XP_016859632 (OMIM: 601739) PREDICTED: homeobox pr ( 352) 165 39.6 0.0091
NP_002389 (OMIM: 601739) homeobox protein Meis1 [H ( 390) 165 39.6 0.0097
XP_006720586 (OMIM: 601740) PREDICTED: homeobox pr ( 476) 166 39.9 0.0097
NP_733775 (OMIM: 601740) homeobox protein Meis2 is ( 477) 166 39.9 0.0097
XP_005264381 (OMIM: 601739) PREDICTED: homeobox pr ( 400) 165 39.6 0.0098
XP_005264380 (OMIM: 601739) PREDICTED: homeobox pr ( 406) 165 39.6 0.0099
>>NP_031400 (OMIM: 206900,212550,606326) homeobox protei (246 aa)
initn: 1643 init1: 1643 opt: 1643 Z-score: 1581.9 bits: 300.2 E(85289): 2.3e-81
Smith-Waterman score: 1643; 99.6% identity (100.0% similar) in 246 aa overlap (1-246:1-246)
10 20 30 40 50 60
pF1KE0 MFQLPILNFSPQQVAGVCETLEESGDVERLGRFLWSLPVAPAACEALNKNESVLRARAIV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_031 MFQLPILNFSPQQVAGVCETLEESGDVERLGRFLWSLPVAPAACEALNKNESVLRARAIV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 AFHGGNYRELYHILENHKFTKESHAKLQALWLEAHYQEAEKLRGRPLGPVDKYRVRKKFP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_031 AFHGGNYRELYHILENHKFTKESHAKLQALWLEAHYQEAEKLRGRPLGPVDKYRVRKKFP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 LPRTIWDGEQKTHCFKERTRNLLREWYLQDPYPNPSKKRELAQATGLTPTQVGNWFKNRR
::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::::
NP_031 LPRTIWDGEQKTHCFKERTRHLLREWYLQDPYPNPSKKRELAQATGLTPTQVGNWFKNRR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 QRDRAAAAKNRLQQQVLSQGSGRALRAEGDGTPEVLGVATSPAASLSSKAATSAISITSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_031 QRDRAAAAKNRLQQQVLSQGSGRALRAEGDGTPEVLGVATSPAASLSSKAATSAISITSS
190 200 210 220 230 240
pF1KE0 DSECDI
::::::
NP_031 DSECDI
>>NP_005404 (OMIM: 157170,269160,603714) homeobox protei (332 aa)
initn: 1388 init1: 1281 opt: 1367 Z-score: 1317.2 bits: 251.6 E(85289): 1.2e-66
Smith-Waterman score: 1367; 78.7% identity (91.7% similar) in 254 aa overlap (1-246:79-332)
10 20 30
pF1KE0 MFQLPILNFSPQQVAGVCETLEESGDVERL
::::: :::::.:::.:::::::.::.:::
NP_005 GGGNGAGGGGAGGAGGGGGGGSRAPPEELSMFQLPTLNFSPEQVASVCETLEETGDIERL
50 60 70 80 90 100
40 50 60 70 80 90
pF1KE0 GRFLWSLPVAPAACEALNKNESVLRARAIVAFHGGNYRELYHILENHKFTKESHAKLQAL
:::::::::::.::::.::.::.:::::.:::: ::.:.:::::::::::::::.::::.
NP_005 GRFLWSLPVAPGACEAINKHESILRARAVVAFHTGNFRDLYHILENHKFTKESHGKLQAM
110 120 130 140 150 160
100 110 120 130 140 150
pF1KE0 WLEAHYQEAEKLRGRPLGPVDKYRVRKKFPLPRTIWDGEQKTHCFKERTRNLLREWYLQD
::::::::::::::::::::::::::::::::::::::::::::::::::.:::::::::
NP_005 WLEAHYQEAEKLRGRPLGPVDKYRVRKKFPLPRTIWDGEQKTHCFKERTRSLLREWYLQD
170 180 190 200 210 220
160 170 180 190 200
pF1KE0 PYPNPSKKRELAQATGLTPTQVGNWFKNRRQRDRAAAAKNRLQQQVLSQGSGRALRAEG-
:::::::::::::::::::::::::::::::::::::::::::.:... .. :.: :
NP_005 PYPNPSKKRELAQATGLTPTQVGNWFKNRRQRDRAAAAKNRLQHQAIGPSGMRSLAEPGC
230 240 250 260 270 280
210 220 230 240
pF1KE0 --DGTPEVLGVATSPAASLSS-----KAATSAISITSSDSECDI
:. : ..:.::..:.:: ..:: .:.::::::::.
NP_005 PTHGSAESPSTAASPTTSVSSLTERADTGTSILSVTSSDSECDV
290 300 310 320 330
>>XP_005264157 (OMIM: 604994) PREDICTED: homeobox protei (293 aa)
initn: 953 init1: 795 opt: 960 Z-score: 929.7 bits: 179.7 E(85289): 4.8e-45
Smith-Waterman score: 960; 58.1% identity (83.4% similar) in 241 aa overlap (1-238:1-236)
10 20 30 40 50 60
pF1KE0 MFQLPILNFSPQQVAGVCETLEESGDVERLGRFLWSLPVAPAACEALNKNESVLRARAIV
: .:: ..:. .::: :::.:...:..::::::::::: ::: :.::::::.:.:.:
XP_005 MSMLPTFGFTQEQVACVCEVLQQGGNIERLGRFLWSLP----ACEHLHKNESVLKAKAVV
10 20 30 40 50
70 80 90 100 110 120
pF1KE0 AFHGGNYRELYHILENHKFTKESHAKLQALWLEAHYQEAEKLRGRPLGPVDKYRVRKKFP
::: ::.::::.:::.:.:. ..::::: :::.::: ::::::::::: : :::::.:::
XP_005 AFHRGNFRELYKILESHQFSPHNHAKLQQLWLKAHYIEAEKLRGRPLGAVGKYRVRRKFP
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE0 LPRTIWDGEQKTHCFKERTRNLLREWYLQDPYPNPSKKRELAQATGLTPTQVGNWFKNRR
:::.:::::. ..::::..:..::::: ..:::.: .:::::.::::: :::.:::::::
XP_005 LPRSIWDGEETSYCFKEKSRSVLREWYAHNPYPSPREKRELAEATGLTTTQVSNWFKNRR
120 130 140 150 160 170
190 200 210 220 230
pF1KE0 QRDRAAAAKNRLQQQVLSQGSGRALRAEGDGTPEVLGVAT---SPAASLSSKAATSAISI
:::::: ::.: ... ...:. .:.: ::: . .:... . .... :. .
XP_005 QRDRAAEAKERYEENNENSNSNSHNPLNGSGKS-VLGSSEDEKTPSGTPDHSSSSPALLL
180 190 200 210 220 230
240
pF1KE0 TSSDSECDI
.
XP_005 SPPPPGLPSLHSLGHPPGPSAVPVPVPGGGGADPLQHHHGLQDSILNPMSANLVDLGS
240 250 260 270 280 290
>>NP_058628 (OMIM: 604994) homeobox protein SIX2 [Homo s (291 aa)
initn: 950 init1: 792 opt: 956 Z-score: 925.9 bits: 179.0 E(85289): 7.8e-45
Smith-Waterman score: 956; 58.1% identity (83.0% similar) in 241 aa overlap (1-238:1-234)
10 20 30 40 50 60
pF1KE0 MFQLPILNFSPQQVAGVCETLEESGDVERLGRFLWSLPVAPAACEALNKNESVLRARAIV
: .:: ..:. .::: :::.:...:..::::::::::: ::: :.::::::.:.:.:
NP_058 MSMLPTFGFTQEQVACVCEVLQQGGNIERLGRFLWSLP----ACEHLHKNESVLKAKAVV
10 20 30 40 50
70 80 90 100 110 120
pF1KE0 AFHGGNYRELYHILENHKFTKESHAKLQALWLEAHYQEAEKLRGRPLGPVDKYRVRKKFP
::: ::.::::.:::.:.:. ..::::: :::.::: ::::::::::: : :::::.:::
NP_058 AFHRGNFRELYKILESHQFSPHNHAKLQQLWLKAHYIEAEKLRGRPLGAVGKYRVRRKFP
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE0 LPRTIWDGEQKTHCFKERTRNLLREWYLQDPYPNPSKKRELAQATGLTPTQVGNWFKNRR
:::.:::::. ..::::..:..::::: ..:::.: .:::::.::::: :::.:::::::
NP_058 LPRSIWDGEETSYCFKEKSRSVLREWYAHNPYPSPREKRELAEATGLTTTQVSNWFKNRR
120 130 140 150 160 170
190 200 210 220 230
pF1KE0 QRDRAAAAKNRLQQQVLSQGSGRALRAEGDGTPEVLGVAT---SPAASLSSKAATSAISI
:::::: ::.: ... ...: : . : . ::: . .:... . .... :. .
NP_058 QRDRAAEAKERENNENSNSNSHNPLNGSGKS---VLGSSEDEKTPSGTPDHSSSSPALLL
180 190 200 210 220 230
240
pF1KE0 TSSDSECDI
.
NP_058 SPPPPGLPSLHSLGHPPGPSAVPVPVPGGGGADPLQHHHGLQDSILNPMSANLVDLGS
240 250 260 270 280 290
>>NP_005973 (OMIM: 113650,601205,605192,608389) homeobox (284 aa)
initn: 937 init1: 784 opt: 933 Z-score: 904.1 bits: 175.0 E(85289): 1.3e-43
Smith-Waterman score: 933; 68.6% identity (89.0% similar) in 191 aa overlap (1-191:1-187)
10 20 30 40 50 60
pF1KE0 MFQLPILNFSPQQVAGVCETLEESGDVERLGRFLWSLPVAPAACEALNKNESVLRARAIV
: .:: ..:. .::: :::.:...:..::::::::::: ::. :.::::::.:.:.:
NP_005 MSMLPSFGFTQEQVACVCEVLQQGGNLERLGRFLWSLP----ACDHLHKNESVLKAKAVV
10 20 30 40 50
70 80 90 100 110 120
pF1KE0 AFHGGNYRELYHILENHKFTKESHAKLQALWLEAHYQEAEKLRGRPLGPVDKYRVRKKFP
::: ::.::::.:::.:.:. ..: ::: :::.::: ::::::::::: : :::::.:::
NP_005 AFHRGNFRELYKILESHQFSPHNHPKLQQLWLKAHYVEAEKLRGRPLGAVGKYRVRRKFP
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE0 LPRTIWDGEQKTHCFKERTRNLLREWYLQDPYPNPSKKRELAQATGLTPTQVGNWFKNRR
:::::::::. ..::::..:..::::: ..:::.: .:::::.::::: :::.:::::::
NP_005 LPRTIWDGEETSYCFKEKSRGVLREWYAHNPYPSPREKRELAEATGLTTTQVSNWFKNRR
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE0 QRDRAAAAKNRLQQQVLSQGSGRALRAEGDGTPEVLGVATSPAASLSSKAATSAISITSS
:::::: ::.:
NP_005 QRDRAAEAKERENTENNNSSSNKQNQLSPLEGGKPLMSSSEEEFSPPQSPDQNSVLLLQG
180 190 200 210 220 230
>>XP_016877091 (OMIM: 113650,601205,605192,608389) PREDI (173 aa)
initn: 819 init1: 666 opt: 815 Z-score: 794.0 bits: 153.9 E(85289): 1.7e-37
Smith-Waterman score: 815; 66.7% identity (88.3% similar) in 171 aa overlap (1-171:1-167)
10 20 30 40 50 60
pF1KE0 MFQLPILNFSPQQVAGVCETLEESGDVERLGRFLWSLPVAPAACEALNKNESVLRARAIV
: .:: ..:. .::: :::.:...:..::::::::::: ::. :.::::::.:.:.:
XP_016 MSMLPSFGFTQEQVACVCEVLQQGGNLERLGRFLWSLP----ACDHLHKNESVLKAKAVV
10 20 30 40 50
70 80 90 100 110 120
pF1KE0 AFHGGNYRELYHILENHKFTKESHAKLQALWLEAHYQEAEKLRGRPLGPVDKYRVRKKFP
::: ::.::::.:::.:.:. ..: ::: :::.::: ::::::::::: : :::::.:::
XP_016 AFHRGNFRELYKILESHQFSPHNHPKLQQLWLKAHYVEAEKLRGRPLGAVGKYRVRRKFP
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE0 LPRTIWDGEQKTHCFKERTRNLLREWYLQDPYPNPSKKRELAQATGLTPTQVGNWFKNRR
:::::::::. ..::::..:..::::: ..:::.: .:::::.::::: ::
XP_016 LPRTIWDGEETSYCFKEKSRGVLREWYAHNPYPSPREKRELAEATGLTTTQGEHRKQ
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE0 QRDRAAAAKNRLQQQVLSQGSGRALRAEGDGTPEVLGVATSPAASLSSKAATSAISITSS
>>XP_005267816 (OMIM: 606342) PREDICTED: homeobox protei (773 aa)
initn: 769 init1: 635 opt: 774 Z-score: 747.7 bits: 147.5 E(85289): 6.6e-35
Smith-Waterman score: 774; 51.5% identity (73.8% similar) in 237 aa overlap (3-239:95-318)
10 20 30
pF1KE0 MFQLPILNFSPQQVAGVCETLEESGDVERLGR
: : : :::..:: :::.:...:...::.:
XP_005 AAAAAGAAADQVQLHSELLGRHHHAAAAAAQTP-LAFSPDHVACVCEALQQGGNLDRLAR
70 80 90 100 110 120
40 50 60 70 80 90
pF1KE0 FLWSLPVAPAACEALNKNESVLRARAIVAFHGGNYRELYHILENHKFTKESHAKLQALWL
:::::: . : :::.:.:::.:::: : : ::: :::.:.: . .: :: ::
XP_005 FLWSLP----QSDLLRGNESLLKARALVAFHQGIYPELYSILESHSFESANHPLLQQLWY
130 140 150 160 170
100 110 120 130 140 150
pF1KE0 EAHYQEAEKLRGRPLGPVDKYRVRKKFPLPRTIWDGEQKTHCFKERTRNLLREWYLQDPY
.:.: :::. :::::: :::::.:.::::::::::::. ..::::..:: :.: : :. :
XP_005 KARYTEAERARGRPLGAVDKYRLRRKFPLPRTIWDGEETVYCFKEKSRNALKELYKQNRY
180 190 200 210 220 230
160 170 180 190 200 210
pF1KE0 PNPSKKRELAQATGLTPTQVGNWFKNRRQRDRAAAAKNRLQQQVLSQGSGRALRAEGDGT
:.:..::.::. :::. :::.::::::::::: . . :.. :.:. . . :
XP_005 PSPAEKRHLAKITGLSLTQVSNWFKNRRQRDRNPS---ETQSKSESDGNPSTEDESSKGH
240 250 260 270 280 290
220 230 240
pF1KE0 PEVLGVATSPAASLSSKAATSAISITSSDSECDI
.. :: ::. . . .:..:
XP_005 EDL-----SPHPLSSSSDGITNLSLSSHMEPVYMQQIGNAKISLSSSGVLLNGSLVPAST
300 310 320 330 340 350
>>NP_059116 (OMIM: 606342) homeobox protein SIX4 [Homo s (781 aa)
initn: 769 init1: 635 opt: 774 Z-score: 747.6 bits: 147.5 E(85289): 6.6e-35
Smith-Waterman score: 774; 51.5% identity (73.8% similar) in 237 aa overlap (3-239:103-326)
10 20 30
pF1KE0 MFQLPILNFSPQQVAGVCETLEESGDVERLGR
: : : :::..:: :::.:...:...::.:
NP_059 AAAAAGAAADQVQLHSELLGRHHHAAAAAAQTP-LAFSPDHVACVCEALQQGGNLDRLAR
80 90 100 110 120 130
40 50 60 70 80 90
pF1KE0 FLWSLPVAPAACEALNKNESVLRARAIVAFHGGNYRELYHILENHKFTKESHAKLQALWL
:::::: . : :::.:.:::.:::: : : ::: :::.:.: . .: :: ::
NP_059 FLWSLP----QSDLLRGNESLLKARALVAFHQGIYPELYSILESHSFESANHPLLQQLWY
140 150 160 170 180
100 110 120 130 140 150
pF1KE0 EAHYQEAEKLRGRPLGPVDKYRVRKKFPLPRTIWDGEQKTHCFKERTRNLLREWYLQDPY
.:.: :::. :::::: :::::.:.::::::::::::. ..::::..:: :.: : :. :
NP_059 KARYTEAERARGRPLGAVDKYRLRRKFPLPRTIWDGEETVYCFKEKSRNALKELYKQNRY
190 200 210 220 230 240
160 170 180 190 200 210
pF1KE0 PNPSKKRELAQATGLTPTQVGNWFKNRRQRDRAAAAKNRLQQQVLSQGSGRALRAEGDGT
:.:..::.::. :::. :::.::::::::::: . . :.. :.:. . . :
NP_059 PSPAEKRHLAKITGLSLTQVSNWFKNRRQRDRNPS---ETQSKSESDGNPSTEDESSKGH
250 260 270 280 290 300
220 230 240
pF1KE0 PEVLGVATSPAASLSSKAATSAISITSSDSECDI
.. :: ::. . . .:..:
NP_059 EDL-----SPHPLSSSSDGITNLSLSSHMEPVYMQQIGNAKISLSSSGVLLNGSLVPAST
310 320 330 340 350
>>NP_787071 (OMIM: 600963,610896) homeobox protein SIX5 (739 aa)
initn: 672 init1: 563 opt: 691 Z-score: 668.7 bits: 132.8 E(85289): 1.6e-30
Smith-Waterman score: 695; 51.7% identity (72.4% similar) in 232 aa overlap (7-231:84-299)
10 20 30
pF1KE0 MFQLPILNFSPQQVAGVCETLEESGDVERLGRFLWS
: :::.::: :::.: ..: . ::.::: .
NP_787 AGAAAAGAEGPGSPGVPGSPPEAASEPPTGLRFSPEQVACVCEALLQAGHAGRLSRFLGA
60 70 80 90 100 110
40 50 60 70 80 90
pF1KE0 LPVAPAACEALNKNESVLRARAIVAFHGGNYRELYHILENHKFTKESHAKLQALWLEAHY
:: :: : : .. ::::::.:::. :.: :::..::.. : :: :: :.:.:.:
NP_787 LP--PA--ERLRGSDPVLRARALVAFQRGEYAELYRLLESRPFPAAHHAFLQDLYLRARY
120 130 140 150 160
100 110 120 130 140 150
pF1KE0 QEAEKLRGRPLGPVDKYRVRKKFPLPRTIWDGEQKTHCFKERTRNLLREWYLQDPYPNPS
.:::. ::: :: :::::.:::::::.::::::. ..:::::.: :. : . ::.:.
NP_787 HEAERARGRALGAVDKYRLRKKFPLPKTIWDGEETVYCFKERSRAALKACYRGNRYPTPD
170 180 190 200 210 220
160 170 180 190 200 210
pF1KE0 KKRELAQATGLTPTQVGNWFKNRRQRDRAAAAKNRLQQQVLSQGSGRALRAEGDGTPEVL
.::.:: :::. :::.:::::::::::..: :.: ..:.::.: .
NP_787 EKRRLATLTGLSLTQVSNWFKNRRQRDRTGA------------GGGAPCKSESDGNPTTE
230 240 250 260 270
220 230 240
pF1KE0 GVAT-SP------AASLSSKAATSAISITSSDSECDI
.. :: :: .:..::
NP_787 DESSRSPEDLERGAAPVSAEAAAQGSIFLAGTGPPAPCPASSSILVNGSFLAASGSPAVL
280 290 300 310 320 330
>>XP_006720592 (OMIM: 601740) PREDICTED: homeobox protei (255 aa)
initn: 152 init1: 133 opt: 169 Z-score: 176.1 bits: 40.1 E(85289): 0.0046
Smith-Waterman score: 169; 33.3% identity (59.5% similar) in 111 aa overlap (129-227:131-240)
100 110 120 130 140 150
pF1KE0 AEKLRGRPLGPVDKYRVRKKFPLPRTIWDGEQKTHCFKERTRNLLREWYLQD---PYPNP
..: : . . :..: : .: :::.
XP_006 NSSEQGDGLDNSVASPGTGDDDDPDKDKKRQKKRGIFPKVATNIMRAWLFQHLTHPYPSE
110 120 130 140 150 160
160 170 180 190 200
pF1KE0 SKKRELAQATGLTPTQVGNWFKNRRQR------DRAAAAKNRLQQQVLSQGSGRALRAEG
.:..::: :::: ::.::: : :.: :.. : :. .: :::.. . ...
XP_006 EQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSNRAGFLLDPSV-SQGAAYSPEGQP
170 180 190 200 210
210 220 230 240
pF1KE0 DGTPEVLG---VATSPAASLSSKAATSAISITSSDSECDI
:. . : .. ::. .:
XP_006 MGSFVLDGQQHMGIRPAGPMSGMGMNMGMDGQWHYM
220 230 240 250
246 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 06:34:56 2016 done: Sun Nov 6 06:34:57 2016
Total Scan time: 5.710 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]