FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0789, 354 aa
  1>>>pF1KE0789 354 - 354 aa - 354 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.6736+/-0.00095; mu= -3.7512+/- 0.058
 mean_var=401.8461+/-82.083, 0's: 0 Z-trim(117.6): 94  B-trim: 0 in 0/54
 Lambda= 0.063980
 statistics sampled from 18289 (18389) to 18289 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.815), E-opt: 0.2 (0.565), width:  16
 Scan time:  2.460

The best scores are:                                      opt bits E(32554)
CCDS42855.1 4 gene_id:644524|Hs108|chr20           ( 354) 2425 237.0 1.9e-62
CCDS9659.1 1 gene_id:7080|Hs108|chr14              ( 371)  882 94.6 1.4e-19
CCDS41945.1 1 gene_id:7080|Hs108|chr14             ( 401)  882 94.6 1.5e-19


>>CCDS42855.1 4 gene_id:644524|Hs108|chr20                (354 aa)
 initn: 2425 init1: 2425 opt: 2425  Z-score: 1234.8  bits: 237.0 E(32554): 1.9e-62
Smith-Waterman score: 2425; 100.0% identity (100.0% similar) in 354 aa overlap (1-354:1-354)

               10        20        30        40        50        60
pF1KE0 MSLSPKHTTPFSVSDILSPIEETYKKFSGAMDGAPPGLGAPLGAAAAYRAPPPGPSSQAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MSLSPKHTTPFSVSDILSPIEETYKKFSGAMDGAPPGLGAPLGAAAAYRAPPPGPSSQAA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 TVAGMQPSHAMAGHNAAAAAAAAAAAAAAAATYHMPPGVSQFPHGAMGSYCNGGLGNMGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 TVAGMQPSHAMAGHNAAAAAAAAAAAAAAAATYHMPPGVSQFPHGAMGSYCNGGLGNMGE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 LPAYTDGMRGGAATGWYGANPDPRYSSISRFMGPSAGVNVAGMGSLTGIADAAKSLGPLH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LPAYTDGMRGGAATGWYGANPDPRYSSISRFMGPSAGVNVAGMGSLTGIADAAKSLGPLH
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 AAAAAAAPRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 AAAAAAAPRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNH
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 RYKMKRQAKDKAAQQLQQEGGLGPPPPPPPSPRRVAVPVLVKDGKPCQNGASTPTPGQAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 RYKMKRQAKDKAAQQLQQEGGLGPPPPPPPSPRRVAVPVLVKDGKPCQNGASTPTPGQAG
              250       260       270       280       290       300

              310       320       330       340       350    
pF1KE0 PQPPAPTPAPELEELSPSPPALHGPGGGLAALDAAAGEYSGGVLGANLLYGRTW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 PQPPAPTPAPELEELSPSPPALHGPGGGLAALDAAAGEYSGGVLGANLLYGRTW
              310       320       330       340       350    

>>CCDS9659.1 1 gene_id:7080|Hs108|chr14                   (371 aa)
 initn: 953 init1: 470 opt: 882  Z-score: 464.8  bits: 94.6 E(32554): 1.4e-19
Smith-Waterman score: 1199; 58.8% identity (73.7% similar) in 354 aa overlap (1-341:1-322)

               10        20        30        40        50        60
pF1KE0 MSLSPKHTTPFSVSDILSPIEETYKKFSGAMDGAPPGLGAPLGAAAAYRAPPPGPSSQAA
       ::.::::::::::::::::.::.::: .  :.:.  ::::::.:    .: ::       
CCDS96 MSMSPKHTTPFSVSDILSPLEESYKKVG--MEGG--GLGAPLAAYRQGQAAPP-------
               10        20          30          40                

               70        80        90        100       110         
pF1KE0 TVAGMQPSHAMAGHNAAAAAAAAAAAAAAAATYHMPP-GVSQFPHGAMGSYCNGGLGNMG
        .:.:: .::. ::..:..::           :::   :: :. :.:.:.::::.::::.
CCDS96 -TAAMQ-QHAV-GHHGAVTAA-----------YHMTAAGVPQLSHSAVGGYCNGNLGNMS
       50          60                   70        80        90     

     120       130        140       150       160       170        
pF1KE0 ELPAYTDGMRGGAA-TGWYGANPDPRYSSISRFMGPSAGVNVAGMGSLTGIADAAKSLGP
       ::: : : ::..:.  ::::::::::. .:::::::..:.:..:::.: ...:..:...:
CCDS96 ELPPYQDTMRNSASGPGWYGANPDPRFPAISRFMGPASGMNMSGMGGLGSLGDVSKNMAP
         100       110       120       130       140       150     

      180       190       200       210       220       230        
pF1KE0 LHAAAAAAAPRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQ
       :      .::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 L-----PSAPRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQ
              160       170       180       190       200       210

      240       250               260       270          280       
pF1KE0 NHRYKMKRQAKDKAAQQ-LQQE-------GGLGPPPPPPP---SPRRVAVPVLVKDGKPC
       ::::::::::::::::: :::.       :: : :        :::::::::::::::::
CCDS96 NHRYKMKRQAKDKAAQQQLQQDSGGGGGGGGTGCPQQQQAQQQSPRRVAVPVLVKDGKPC
              220       230       240       250       260       270

       290       300       310       320       330       340       
pF1KE0 QNGASTPTPGQAGPQPPAPTPAPELEELSPSPPALHGPGGGLAALDAAAGEYSGGVLGAN
       : ::  :.:: :. :  :   : .  . . .  :  . :.: :.: :  :.  :      
CCDS96 QAGA--PAPGAASLQGHAQQQAQHQAQAAQAAAAAISVGSGGAGLGAHPGHQPGSAGQSP
                280       290       300       310       320        

       350                                        
pF1KE0 LLYGRTW                                    
                                                  
CCDS96 DLAHHAASPAALQGQVSSLSHLNSSGSDYGTMSCSTLLYGRTW
      330       340       350       360       370 

>>CCDS41945.1 1 gene_id:7080|Hs108|chr14                  (401 aa)
 initn: 953 init1: 470 opt: 882  Z-score: 464.4  bits: 94.6 E(32554): 1.5e-19
Smith-Waterman score: 1199; 58.8% identity (73.7% similar) in 354 aa overlap (1-341:31-352)

                                             10        20        30
pF1KE0                               MSLSPKHTTPFSVSDILSPIEETYKKFSGA
                                     ::.::::::::::::::::.::.::: .  
CCDS41 MWSGGSGKARGWEAAAGGRSSPGRLSRRRIMSMSPKHTTPFSVSDILSPLEESYKKVG--
               10        20        30        40        50          

               40        50        60        70        80        90
pF1KE0 MDGAPPGLGAPLGAAAAYRAPPPGPSSQAATVAGMQPSHAMAGHNAAAAAAAAAAAAAAA
       :.:.  ::::::.:    .: ::        .:.:: .::. ::..:..::         
CCDS41 MEGG--GLGAPLAAYRQGQAAPP--------TAAMQ-QHAV-GHHGAVTAA---------
       60          70                80          90                

               100       110       120       130        140        
pF1KE0 ATYHMPP-GVSQFPHGAMGSYCNGGLGNMGELPAYTDGMRGGAA-TGWYGANPDPRYSSI
         :::   :: :. :.:.:.::::.::::.::: : : ::..:.  ::::::::::. .:
CCDS41 --YHMTAAGVPQLSHSAVGGYCNGNLGNMSELPPYQDTMRNSASGPGWYGANPDPRFPAI
         100       110       120       130       140       150     

      150       160       170       180       190       200        
pF1KE0 SRFMGPSAGVNVAGMGSLTGIADAAKSLGPLHAAAAAAAPRRKRRVLFSQAQVYELERRF
       ::::::..:.:..:::.: ...:..:...::      .::::::::::::::::::::::
CCDS41 SRFMGPASGMNMSGMGGLGSLGDVSKNMAPL-----PSAPRRKRRVLFSQAQVYELERRF
         160       170       180            190       200       210

      210       220       230       240       250               260
pF1KE0 KQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDKAAQQ-LQQE-------G
       ::::::::::::::::::::::::::::::::::::::::::::::: :::.       :
CCDS41 KQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDKAAQQQLQQDSGGGGGGG
              220       230       240       250       260       270

              270          280       290       300       310       
pF1KE0 GLGPPPPPPP---SPRRVAVPVLVKDGKPCQNGASTPTPGQAGPQPPAPTPAPELEELSP
       : : :        :::::::::::::::::: ::  :.:: :. :  :   : .  . . 
CCDS41 GTGCPQQQQAQQQSPRRVAVPVLVKDGKPCQAGA--PAPGAASLQGHAQQQAQHQAQAAQ
              280       290       300         310       320        

       320       330       340       350                           
pF1KE0 SPPALHGPGGGLAALDAAAGEYSGGVLGANLLYGRTW                       
       .  :  . :.: :.: :  :.  :                                    
CCDS41 AAAAAISVGSGGAGLGAHPGHQPGSAGQSPDLAHHAASPAALQGQVSSLSHLNSSGSDYG
      330       340       350       360       370       380        




354 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 04:28:50 2016 done: Tue Nov  8 04:28:50 2016
 Total Scan time:  2.460 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]