FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0714, 411 aa
  1>>>pF1KE0714 411 - 411 aa - 411 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 11.2156+/-0.00134; mu= -1.8921+/- 0.081
 mean_var=714.3061+/-147.304, 0's: 0 Z-trim(115.2): 199  B-trim: 0 in 0/52
 Lambda= 0.047988
 statistics sampled from 15602 (15788) to 15602 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.747), E-opt: 0.2 (0.485), width:  16
 Scan time:  3.390

The best scores are:                                      opt bits E(32554)
CCDS33066.1 TPRX1 gene_id:284355|Hs108|chr19       ( 411) 3021 223.9 2.3e-58


>>CCDS33066.1 TPRX1 gene_id:284355|Hs108|chr19            (411 aa)
 initn: 3021 init1: 3021 opt: 3021  Z-score: 1161.4  bits: 223.9 E(32554): 2.3e-58
Smith-Waterman score: 3021; 100.0% identity (100.0% similar) in 411 aa overlap (1-411:1-411)

               10        20        30        40        50        60
pF1KE0 MLSLREQQLQVWFKNRRAKLARERRLQQQPQRVPGQRGRGARAAPLVPAASASAPQRGPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MLSLREQQLQVWFKNRRAKLARERRLQQQPQRVPGQRGRGARAAPLVPAASASAPQRGPS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 GILPAAEPTICSLHQAWGGPGCRAQKGIPAALSPGPGPIPAPIPGPAQIPGPLPGSIPGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 GILPAAEPTICSLHQAWGGPGCRAQKGIPAALSPGPGPIPAPIPGPAQIPGPLPGSIPGP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 IPGPAQIPSPIPAPIPGPISGPVQIPGPFRGPIPGPISGPAPIPGPISGPFSGPNPGPIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 IPGPAQIPSPIPAPIPGPISGPVQIPGPFRGPIPGPISGPAPIPGPISGPFSGPNPGPIP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 GPNPGPIPGPISGPIPGPISVPIPGPIPGPISGPISGPNPGPIPGPIPGPISGPNPGPIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 GPNPGPIPGPISGPIPGPISVPIPGPIPGPISGPISGPNPGPIPGPIPGPISGPNPGPIP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 GPISGPNPGLIPGPIPGPISGPGPIIGPIPSPAQIPGPGRLQGPGPILSPGRMRSPGSLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 GPISGPNPGLIPGPIPGPISGPGPIIGPIPSPAQIPGPGRLQGPGPILSPGRMRSPGSLP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 GLAPILGPGSGPGSGSVPAPIPGPGSLPAPAPLWPQSPDASDFLPDTQLFPHFTELLLPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 GLAPILGPGSGPGSGSVPAPIPGPGSLPAPAPLWPQSPDASDFLPDTQLFPHFTELLLPL
              310       320       330       340       350       360

              370       380       390       400       410 
pF1KE0 DPLEGSSVSTMTSQYQEGDDSMGKKHSGSQPQEEGGSVNENHSGPRLLLDL
       :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 DPLEGSSVSTMTSQYQEGDDSMGKKHSGSQPQEEGGSVNENHSGPRLLLDL
              370       380       390       400       410 




411 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 04:39:43 2016 done: Tue Nov  8 04:39:44 2016
 Total Scan time:  3.390 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]