Result of FASTA (omim) for
pFN21AE0704
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0704, 407 aa
1>>>pF1KE0704 407 - 407 aa - 407 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.2993+/-0.000382; mu= 16.2793+/- 0.024
mean_var=214.4565+/-47.241, 0's: 0 Z-trim(119.5): 284 B-trim: 1636 in 1/57
Lambda= 0.087580
statistics sampled from 33182 (33555) to 33182 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.737), E-opt: 0.2 (0.393), width: 16
Scan time: 8.920
The best scores are: opt bits E(85289)
NP_002889 (OMIM: 602387) RNA-binding motif, single ( 407) 2722 356.6 6.3e-98
XP_011536942 (OMIM: 602387) PREDICTED: RNA-binding ( 407) 2722 356.6 6.3e-98
XP_006719607 (OMIM: 602387) PREDICTED: RNA-binding ( 407) 2722 356.6 6.3e-98
XP_016875264 (OMIM: 602387) PREDICTED: RNA-binding ( 388) 2583 339.0 1.2e-92
XP_005269118 (OMIM: 602387) PREDICTED: RNA-binding ( 388) 2556 335.6 1.3e-91
XP_006719606 (OMIM: 602387) PREDICTED: RNA-binding ( 429) 2549 334.8 2.5e-91
XP_011536941 (OMIM: 602387) PREDICTED: RNA-binding ( 414) 2365 311.5 2.4e-84
XP_005269117 (OMIM: 602387) PREDICTED: RNA-binding ( 419) 2365 311.5 2.4e-84
XP_006719605 (OMIM: 602387) PREDICTED: RNA-binding ( 448) 2365 311.6 2.5e-84
XP_005269116 (OMIM: 602387) PREDICTED: RNA-binding ( 448) 2365 311.6 2.5e-84
XP_006719604 (OMIM: 602387) PREDICTED: RNA-binding ( 477) 2365 311.6 2.6e-84
XP_011536939 (OMIM: 602387) PREDICTED: RNA-binding ( 458) 2226 294.0 5e-79
XP_005246797 (OMIM: 602310) PREDICTED: RNA-binding ( 419) 1856 247.2 5.6e-65
XP_011536940 (OMIM: 602387) PREDICTED: RNA-binding ( 430) 1846 246.0 1.4e-64
NP_058520 (OMIM: 602310) RNA-binding motif, single ( 406) 1831 244.0 4.9e-64
NP_001171183 (OMIM: 605786) RNA-binding motif, sin ( 433) 1615 216.8 8.3e-56
XP_016875267 (OMIM: 602387) PREDICTED: RNA-binding ( 237) 1552 208.4 1.5e-53
XP_011536944 (OMIM: 602387) PREDICTED: RNA-binding ( 352) 1550 208.4 2.2e-53
NP_001003793 (OMIM: 605786) RNA-binding motif, sin ( 437) 1544 207.8 4.2e-53
XP_016861667 (OMIM: 605786) PREDICTED: RNA-binding ( 435) 1542 207.6 5e-53
XP_005265117 (OMIM: 605786) PREDICTED: RNA-binding ( 436) 1542 207.6 5e-53
NP_055298 (OMIM: 605786) RNA-binding motif, single ( 420) 1534 206.5 9.9e-53
NP_001171182 (OMIM: 605786) RNA-binding motif, sin ( 421) 1534 206.5 9.9e-53
XP_016861668 (OMIM: 605786) PREDICTED: RNA-binding ( 420) 1532 206.3 1.2e-52
XP_005265119 (OMIM: 605786) PREDICTED: RNA-binding ( 419) 1529 205.9 1.5e-52
XP_005265118 (OMIM: 605786) PREDICTED: RNA-binding ( 420) 1529 205.9 1.5e-52
NP_001003792 (OMIM: 605786) RNA-binding motif, sin ( 419) 1527 205.6 1.8e-52
XP_016860115 (OMIM: 602310) PREDICTED: RNA-binding ( 402) 1515 204.1 5.1e-52
NP_002888 (OMIM: 602310) RNA-binding motif, single ( 403) 1511 203.6 7.2e-52
XP_016861669 (OMIM: 605786) PREDICTED: RNA-binding ( 404) 1463 197.5 4.9e-50
XP_005246796 (OMIM: 602310) PREDICTED: RNA-binding ( 420) 1462 197.4 5.4e-50
XP_016861670 (OMIM: 605786) PREDICTED: RNA-binding ( 403) 1461 197.3 5.8e-50
XP_005246798 (OMIM: 602310) PREDICTED: RNA-binding ( 419) 1460 197.2 6.4e-50
XP_005246795 (OMIM: 602310) PREDICTED: RNA-binding ( 421) 1459 197.0 7.1e-50
XP_005246794 (OMIM: 602310) PREDICTED: RNA-binding ( 422) 1455 196.5 1e-49
XP_016861671 (OMIM: 605786) PREDICTED: RNA-binding ( 370) 1452 196.1 1.2e-49
XP_016875265 (OMIM: 602387) PREDICTED: RNA-binding ( 307) 1195 163.5 6.5e-40
XP_016875266 (OMIM: 602387) PREDICTED: RNA-binding ( 296) 1188 162.6 1.2e-39
XP_005269123 (OMIM: 602387) PREDICTED: RNA-binding ( 214) 1177 161.0 2.6e-39
XP_005265122 (OMIM: 605786) PREDICTED: RNA-binding ( 328) 1003 139.3 1.4e-32
XP_005265120 (OMIM: 605786) PREDICTED: RNA-binding ( 342) 999 138.8 2e-32
XP_016869914 (OMIM: 601673) PREDICTED: ELAV-like p ( 346) 394 62.4 2e-09
NP_001164668 (OMIM: 601673) ELAV-like protein 2 is ( 346) 394 62.4 2e-09
NP_001164666 (OMIM: 601673) ELAV-like protein 2 is ( 346) 394 62.4 2e-09
XP_016869913 (OMIM: 601673) PREDICTED: ELAV-like p ( 346) 394 62.4 2e-09
XP_016869905 (OMIM: 601673) PREDICTED: ELAV-like p ( 375) 394 62.4 2.1e-09
XP_011516079 (OMIM: 601673) PREDICTED: ELAV-like p ( 375) 394 62.4 2.1e-09
XP_016869908 (OMIM: 601673) PREDICTED: ELAV-like p ( 359) 392 62.1 2.5e-09
XP_016869911 (OMIM: 601673) PREDICTED: ELAV-like p ( 359) 392 62.1 2.5e-09
XP_016869909 (OMIM: 601673) PREDICTED: ELAV-like p ( 359) 392 62.1 2.5e-09
>>NP_002889 (OMIM: 602387) RNA-binding motif, single-str (407 aa)
initn: 2722 init1: 2722 opt: 2722 Z-score: 1879.0 bits: 356.6 E(85289): 6.3e-98
Smith-Waterman score: 2722; 100.0% identity (100.0% similar) in 407 aa overlap (1-407:1-407)
10 20 30 40 50 60
pF1KE0 MLLSVTSRPGISTFGYNRNNKKPYVSLAQQMAPPSPSNSTPNSSSGSNGNDQLSKTNLYI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MLLSVTSRPGISTFGYNRNNKKPYVSLAQQMAPPSPSNSTPNSSSGSNGNDQLSKTNLYI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 RGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 RGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKAS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 GVQAQMAKQQEQDPTNLYISNLPLSMDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 GVQAQMAKQQEQDPTNLYISNLPLSMDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 RMESTEKCEAIITHFNGKYIKTPPGVPAPSDPLLCKFADGGPKKRQNQGKFVQNGRAWPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 RMESTEKCEAIITHFNGKYIKTPPGVPAPSDPLLCKFADGGPKKRQNQGKFVQNGRAWPR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 NADMGVMALTYDPTTALQNGFYPAPYNITPNRMLAQSALSPYLSSPVSSYQRVTQTSPLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 NADMGVMALTYDPTTALQNGFYPAPYNITPNRMLAQSALSPYLSSPVSSYQRVTQTSPLQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE0 VPNPSWMHHHSYLMQPSGSVLTPGMDHPISLQPASMMGPLTQQLGHLSLSSTGTYMPTAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 VPNPSWMHHHSYLMQPSGSVLTPGMDHPISLQPASMMGPLTQQLGHLSLSSTGTYMPTAA
310 320 330 340 350 360
370 380 390 400
pF1KE0 AMQGAYISQYTPVPSSSVSVEESSGQQNQVAVDAPSEHGVYSFQFNK
:::::::::::::::::::::::::::::::::::::::::::::::
NP_002 AMQGAYISQYTPVPSSSVSVEESSGQQNQVAVDAPSEHGVYSFQFNK
370 380 390 400
>>XP_011536942 (OMIM: 602387) PREDICTED: RNA-binding mot (407 aa)
initn: 2722 init1: 2722 opt: 2722 Z-score: 1879.0 bits: 356.6 E(85289): 6.3e-98
Smith-Waterman score: 2722; 100.0% identity (100.0% similar) in 407 aa overlap (1-407:1-407)
10 20 30 40 50 60
pF1KE0 MLLSVTSRPGISTFGYNRNNKKPYVSLAQQMAPPSPSNSTPNSSSGSNGNDQLSKTNLYI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MLLSVTSRPGISTFGYNRNNKKPYVSLAQQMAPPSPSNSTPNSSSGSNGNDQLSKTNLYI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 RGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKAS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 GVQAQMAKQQEQDPTNLYISNLPLSMDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GVQAQMAKQQEQDPTNLYISNLPLSMDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 RMESTEKCEAIITHFNGKYIKTPPGVPAPSDPLLCKFADGGPKKRQNQGKFVQNGRAWPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RMESTEKCEAIITHFNGKYIKTPPGVPAPSDPLLCKFADGGPKKRQNQGKFVQNGRAWPR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 NADMGVMALTYDPTTALQNGFYPAPYNITPNRMLAQSALSPYLSSPVSSYQRVTQTSPLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NADMGVMALTYDPTTALQNGFYPAPYNITPNRMLAQSALSPYLSSPVSSYQRVTQTSPLQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE0 VPNPSWMHHHSYLMQPSGSVLTPGMDHPISLQPASMMGPLTQQLGHLSLSSTGTYMPTAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VPNPSWMHHHSYLMQPSGSVLTPGMDHPISLQPASMMGPLTQQLGHLSLSSTGTYMPTAA
310 320 330 340 350 360
370 380 390 400
pF1KE0 AMQGAYISQYTPVPSSSVSVEESSGQQNQVAVDAPSEHGVYSFQFNK
:::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AMQGAYISQYTPVPSSSVSVEESSGQQNQVAVDAPSEHGVYSFQFNK
370 380 390 400
>>XP_006719607 (OMIM: 602387) PREDICTED: RNA-binding mot (407 aa)
initn: 2722 init1: 2722 opt: 2722 Z-score: 1879.0 bits: 356.6 E(85289): 6.3e-98
Smith-Waterman score: 2722; 100.0% identity (100.0% similar) in 407 aa overlap (1-407:1-407)
10 20 30 40 50 60
pF1KE0 MLLSVTSRPGISTFGYNRNNKKPYVSLAQQMAPPSPSNSTPNSSSGSNGNDQLSKTNLYI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MLLSVTSRPGISTFGYNRNNKKPYVSLAQQMAPPSPSNSTPNSSSGSNGNDQLSKTNLYI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 RGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 RGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKAS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 GVQAQMAKQQEQDPTNLYISNLPLSMDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 GVQAQMAKQQEQDPTNLYISNLPLSMDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 RMESTEKCEAIITHFNGKYIKTPPGVPAPSDPLLCKFADGGPKKRQNQGKFVQNGRAWPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 RMESTEKCEAIITHFNGKYIKTPPGVPAPSDPLLCKFADGGPKKRQNQGKFVQNGRAWPR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 NADMGVMALTYDPTTALQNGFYPAPYNITPNRMLAQSALSPYLSSPVSSYQRVTQTSPLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 NADMGVMALTYDPTTALQNGFYPAPYNITPNRMLAQSALSPYLSSPVSSYQRVTQTSPLQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE0 VPNPSWMHHHSYLMQPSGSVLTPGMDHPISLQPASMMGPLTQQLGHLSLSSTGTYMPTAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 VPNPSWMHHHSYLMQPSGSVLTPGMDHPISLQPASMMGPLTQQLGHLSLSSTGTYMPTAA
310 320 330 340 350 360
370 380 390 400
pF1KE0 AMQGAYISQYTPVPSSSVSVEESSGQQNQVAVDAPSEHGVYSFQFNK
:::::::::::::::::::::::::::::::::::::::::::::::
XP_006 AMQGAYISQYTPVPSSSVSVEESSGQQNQVAVDAPSEHGVYSFQFNK
370 380 390 400
>>XP_016875264 (OMIM: 602387) PREDICTED: RNA-binding mot (388 aa)
initn: 2583 init1: 2583 opt: 2583 Z-score: 1784.3 bits: 339.0 E(85289): 1.2e-92
Smith-Waterman score: 2583; 99.7% identity (100.0% similar) in 386 aa overlap (22-407:3-388)
10 20 30 40 50 60
pF1KE0 MLLSVTSRPGISTFGYNRNNKKPYVSLAQQMAPPSPSNSTPNSSSGSNGNDQLSKTNLYI
.::::::::::::::::::::::::::::::::::::::
XP_016 MIQPYVSLAQQMAPPSPSNSTPNSSSGSNGNDQLSKTNLYI
10 20 30 40
70 80 90 100 110 120
pF1KE0 RGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKAS
50 60 70 80 90 100
130 140 150 160 170 180
pF1KE0 GVQAQMAKQQEQDPTNLYISNLPLSMDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GVQAQMAKQQEQDPTNLYISNLPLSMDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFA
110 120 130 140 150 160
190 200 210 220 230 240
pF1KE0 RMESTEKCEAIITHFNGKYIKTPPGVPAPSDPLLCKFADGGPKKRQNQGKFVQNGRAWPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RMESTEKCEAIITHFNGKYIKTPPGVPAPSDPLLCKFADGGPKKRQNQGKFVQNGRAWPR
170 180 190 200 210 220
250 260 270 280 290 300
pF1KE0 NADMGVMALTYDPTTALQNGFYPAPYNITPNRMLAQSALSPYLSSPVSSYQRVTQTSPLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NADMGVMALTYDPTTALQNGFYPAPYNITPNRMLAQSALSPYLSSPVSSYQRVTQTSPLQ
230 240 250 260 270 280
310 320 330 340 350 360
pF1KE0 VPNPSWMHHHSYLMQPSGSVLTPGMDHPISLQPASMMGPLTQQLGHLSLSSTGTYMPTAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VPNPSWMHHHSYLMQPSGSVLTPGMDHPISLQPASMMGPLTQQLGHLSLSSTGTYMPTAA
290 300 310 320 330 340
370 380 390 400
pF1KE0 AMQGAYISQYTPVPSSSVSVEESSGQQNQVAVDAPSEHGVYSFQFNK
:::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AMQGAYISQYTPVPSSSVSVEESSGQQNQVAVDAPSEHGVYSFQFNK
350 360 370 380
>>XP_005269118 (OMIM: 602387) PREDICTED: RNA-binding mot (388 aa)
initn: 2658 init1: 2556 opt: 2556 Z-score: 1765.9 bits: 335.6 E(85289): 1.3e-91
Smith-Waterman score: 2556; 99.7% identity (100.0% similar) in 383 aa overlap (1-383:1-383)
10 20 30 40 50 60
pF1KE0 MLLSVTSRPGISTFGYNRNNKKPYVSLAQQMAPPSPSNSTPNSSSGSNGNDQLSKTNLYI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MLLSVTSRPGISTFGYNRNNKKPYVSLAQQMAPPSPSNSTPNSSSGSNGNDQLSKTNLYI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 RGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKAS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 GVQAQMAKQQEQDPTNLYISNLPLSMDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GVQAQMAKQQEQDPTNLYISNLPLSMDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 RMESTEKCEAIITHFNGKYIKTPPGVPAPSDPLLCKFADGGPKKRQNQGKFVQNGRAWPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RMESTEKCEAIITHFNGKYIKTPPGVPAPSDPLLCKFADGGPKKRQNQGKFVQNGRAWPR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 NADMGVMALTYDPTTALQNGFYPAPYNITPNRMLAQSALSPYLSSPVSSYQRVTQTSPLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NADMGVMALTYDPTTALQNGFYPAPYNITPNRMLAQSALSPYLSSPVSSYQRVTQTSPLQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE0 VPNPSWMHHHSYLMQPSGSVLTPGMDHPISLQPASMMGPLTQQLGHLSLSSTGTYMPTAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VPNPSWMHHHSYLMQPSGSVLTPGMDHPISLQPASMMGPLTQQLGHLSLSSTGTYMPTAA
310 320 330 340 350 360
370 380 390 400
pF1KE0 AMQGAYISQYTPVPSSSVSVEESSGQQNQVAVDAPSEHGVYSFQFNK
:::::::::::::::::::::.:
XP_005 AMQGAYISQYTPVPSSSVSVEDSPPHLY
370 380
>>XP_006719606 (OMIM: 602387) PREDICTED: RNA-binding mot (429 aa)
initn: 2549 init1: 2549 opt: 2549 Z-score: 1760.7 bits: 334.8 E(85289): 2.5e-91
Smith-Waterman score: 2549; 100.0% identity (100.0% similar) in 381 aa overlap (1-381:1-381)
10 20 30 40 50 60
pF1KE0 MLLSVTSRPGISTFGYNRNNKKPYVSLAQQMAPPSPSNSTPNSSSGSNGNDQLSKTNLYI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MLLSVTSRPGISTFGYNRNNKKPYVSLAQQMAPPSPSNSTPNSSSGSNGNDQLSKTNLYI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 RGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 RGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKAS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 GVQAQMAKQQEQDPTNLYISNLPLSMDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 GVQAQMAKQQEQDPTNLYISNLPLSMDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 RMESTEKCEAIITHFNGKYIKTPPGVPAPSDPLLCKFADGGPKKRQNQGKFVQNGRAWPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 RMESTEKCEAIITHFNGKYIKTPPGVPAPSDPLLCKFADGGPKKRQNQGKFVQNGRAWPR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 NADMGVMALTYDPTTALQNGFYPAPYNITPNRMLAQSALSPYLSSPVSSYQRVTQTSPLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 NADMGVMALTYDPTTALQNGFYPAPYNITPNRMLAQSALSPYLSSPVSSYQRVTQTSPLQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE0 VPNPSWMHHHSYLMQPSGSVLTPGMDHPISLQPASMMGPLTQQLGHLSLSSTGTYMPTAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 VPNPSWMHHHSYLMQPSGSVLTPGMDHPISLQPASMMGPLTQQLGHLSLSSTGTYMPTAA
310 320 330 340 350 360
370 380 390 400
pF1KE0 AMQGAYISQYTPVPSSSVSVEESSGQQNQVAVDAPSEHGVYSFQFNK
:::::::::::::::::::::
XP_006 AMQGAYISQYTPVPSSSVSVEAWAWKKKSLRSCPLLLLMEPGGTITFFVCYIQGDQKNFS
370 380 390 400 410 420
>>XP_011536941 (OMIM: 602387) PREDICTED: RNA-binding mot (414 aa)
initn: 2365 init1: 2365 opt: 2365 Z-score: 1635.2 bits: 311.5 E(85289): 2.4e-84
Smith-Waterman score: 2365; 100.0% identity (100.0% similar) in 352 aa overlap (1-352:1-352)
10 20 30 40 50 60
pF1KE0 MLLSVTSRPGISTFGYNRNNKKPYVSLAQQMAPPSPSNSTPNSSSGSNGNDQLSKTNLYI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MLLSVTSRPGISTFGYNRNNKKPYVSLAQQMAPPSPSNSTPNSSSGSNGNDQLSKTNLYI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 RGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKAS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 GVQAQMAKQQEQDPTNLYISNLPLSMDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GVQAQMAKQQEQDPTNLYISNLPLSMDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 RMESTEKCEAIITHFNGKYIKTPPGVPAPSDPLLCKFADGGPKKRQNQGKFVQNGRAWPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RMESTEKCEAIITHFNGKYIKTPPGVPAPSDPLLCKFADGGPKKRQNQGKFVQNGRAWPR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 NADMGVMALTYDPTTALQNGFYPAPYNITPNRMLAQSALSPYLSSPVSSYQRVTQTSPLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NADMGVMALTYDPTTALQNGFYPAPYNITPNRMLAQSALSPYLSSPVSSYQRVTQTSPLQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE0 VPNPSWMHHHSYLMQPSGSVLTPGMDHPISLQPASMMGPLTQQLGHLSLSSTGTYMPTAA
::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VPNPSWMHHHSYLMQPSGSVLTPGMDHPISLQPASMMGPLTQQLGHLSLSSTVYADGCSY
310 320 330 340 350 360
370 380 390 400
pF1KE0 AMQGAYISQYTPVPSSSVSVEESSGQQNQVAVDAPSEHGVYSFQFNK
XP_011 ARSLHLPVHPCAFFQCFSRGEQRPTEPSGSGRTLRAWGLFFPVQQVTDSPPHLY
370 380 390 400 410
>>XP_005269117 (OMIM: 602387) PREDICTED: RNA-binding mot (419 aa)
initn: 2365 init1: 2365 opt: 2365 Z-score: 1635.1 bits: 311.5 E(85289): 2.4e-84
Smith-Waterman score: 2365; 100.0% identity (100.0% similar) in 352 aa overlap (1-352:1-352)
10 20 30 40 50 60
pF1KE0 MLLSVTSRPGISTFGYNRNNKKPYVSLAQQMAPPSPSNSTPNSSSGSNGNDQLSKTNLYI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MLLSVTSRPGISTFGYNRNNKKPYVSLAQQMAPPSPSNSTPNSSSGSNGNDQLSKTNLYI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 RGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKAS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 GVQAQMAKQQEQDPTNLYISNLPLSMDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GVQAQMAKQQEQDPTNLYISNLPLSMDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 RMESTEKCEAIITHFNGKYIKTPPGVPAPSDPLLCKFADGGPKKRQNQGKFVQNGRAWPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RMESTEKCEAIITHFNGKYIKTPPGVPAPSDPLLCKFADGGPKKRQNQGKFVQNGRAWPR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 NADMGVMALTYDPTTALQNGFYPAPYNITPNRMLAQSALSPYLSSPVSSYQRVTQTSPLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NADMGVMALTYDPTTALQNGFYPAPYNITPNRMLAQSALSPYLSSPVSSYQRVTQTSPLQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE0 VPNPSWMHHHSYLMQPSGSVLTPGMDHPISLQPASMMGPLTQQLGHLSLSSTGTYMPTAA
::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VPNPSWMHHHSYLMQPSGSVLTPGMDHPISLQPASMMGPLTQQLGHLSLSSTVYADGCSY
310 320 330 340 350 360
370 380 390 400
pF1KE0 AMQGAYISQYTPVPSSSVSVEESSGQQNQVAVDAPSEHGVYSFQFNK
XP_005 ARSLHLPVHPCAFFQCFSRGFPSPSLLNRNEFLEILMLPDSRGLTRNGDHPSALLRTNT
370 380 390 400 410
>>XP_006719605 (OMIM: 602387) PREDICTED: RNA-binding mot (448 aa)
initn: 2365 init1: 2365 opt: 2365 Z-score: 1634.9 bits: 311.6 E(85289): 2.5e-84
Smith-Waterman score: 2365; 100.0% identity (100.0% similar) in 352 aa overlap (1-352:1-352)
10 20 30 40 50 60
pF1KE0 MLLSVTSRPGISTFGYNRNNKKPYVSLAQQMAPPSPSNSTPNSSSGSNGNDQLSKTNLYI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MLLSVTSRPGISTFGYNRNNKKPYVSLAQQMAPPSPSNSTPNSSSGSNGNDQLSKTNLYI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 RGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 RGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKAS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 GVQAQMAKQQEQDPTNLYISNLPLSMDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 GVQAQMAKQQEQDPTNLYISNLPLSMDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 RMESTEKCEAIITHFNGKYIKTPPGVPAPSDPLLCKFADGGPKKRQNQGKFVQNGRAWPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 RMESTEKCEAIITHFNGKYIKTPPGVPAPSDPLLCKFADGGPKKRQNQGKFVQNGRAWPR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 NADMGVMALTYDPTTALQNGFYPAPYNITPNRMLAQSALSPYLSSPVSSYQRVTQTSPLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 NADMGVMALTYDPTTALQNGFYPAPYNITPNRMLAQSALSPYLSSPVSSYQRVTQTSPLQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE0 VPNPSWMHHHSYLMQPSGSVLTPGMDHPISLQPASMMGPLTQQLGHLSLSSTGTYMPTAA
::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 VPNPSWMHHHSYLMQPSGSVLTPGMDHPISLQPASMMGPLTQQLGHLSLSSTVYADGCSY
310 320 330 340 350 360
370 380 390 400
pF1KE0 AMQGAYISQYTPVPSSSVSVEESSGQQNQVAVDAPSEHGVYSFQFNK
XP_006 ARSLHLPVHPCAFFQCFSRGLGLEKEISTFLPFTIADGAWGNHHFFCVLHSRRSKKLFFF
370 380 390 400 410 420
>>XP_005269116 (OMIM: 602387) PREDICTED: RNA-binding mot (448 aa)
initn: 2365 init1: 2365 opt: 2365 Z-score: 1634.9 bits: 311.6 E(85289): 2.5e-84
Smith-Waterman score: 2365; 100.0% identity (100.0% similar) in 352 aa overlap (1-352:1-352)
10 20 30 40 50 60
pF1KE0 MLLSVTSRPGISTFGYNRNNKKPYVSLAQQMAPPSPSNSTPNSSSGSNGNDQLSKTNLYI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MLLSVTSRPGISTFGYNRNNKKPYVSLAQQMAPPSPSNSTPNSSSGSNGNDQLSKTNLYI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 RGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKAS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 GVQAQMAKQQEQDPTNLYISNLPLSMDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GVQAQMAKQQEQDPTNLYISNLPLSMDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 RMESTEKCEAIITHFNGKYIKTPPGVPAPSDPLLCKFADGGPKKRQNQGKFVQNGRAWPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RMESTEKCEAIITHFNGKYIKTPPGVPAPSDPLLCKFADGGPKKRQNQGKFVQNGRAWPR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 NADMGVMALTYDPTTALQNGFYPAPYNITPNRMLAQSALSPYLSSPVSSYQRVTQTSPLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NADMGVMALTYDPTTALQNGFYPAPYNITPNRMLAQSALSPYLSSPVSSYQRVTQTSPLQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE0 VPNPSWMHHHSYLMQPSGSVLTPGMDHPISLQPASMMGPLTQQLGHLSLSSTGTYMPTAA
::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VPNPSWMHHHSYLMQPSGSVLTPGMDHPISLQPASMMGPLTQQLGHLSLSSTVYADGCSY
310 320 330 340 350 360
370 380 390 400
pF1KE0 AMQGAYISQYTPVPSSSVSVEESSGQQNQVAVDAPSEHGVYSFQFNK
XP_005 ARSLHLPVHPCAFFQCFSRGEQRPTEPSGSGRTLRAWGLFFPVQQVTVGFPSPSLLNRNE
370 380 390 400 410 420
407 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 01:43:54 2016 done: Tue Nov 8 01:43:55 2016
Total Scan time: 8.920 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]