FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE0612, 363 aa 1>>>pF1KE0612 363 - 363 aa - 363 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 10.3331+/-0.000351; mu= -3.9999+/- 0.022 mean_var=343.1211+/-69.843, 0's: 0 Z-trim(125.3): 208 B-trim: 0 in 0/58 Lambda= 0.069239 statistics sampled from 48397 (48650) to 48397 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.828), E-opt: 0.2 (0.57), width: 16 Scan time: 9.540 The best scores are: opt bits E(85289) NP_001092304 (OMIM: 603354) homeobox protein GBX-1 ( 363) 2466 259.3 9.9e-69 XP_016867453 (OMIM: 603354) PREDICTED: homeobox pr ( 204) 1222 134.8 1.7e-31 XP_016867454 (OMIM: 603354) PREDICTED: homeobox pr ( 203) 1210 133.6 3.8e-31 NP_001476 (OMIM: 601135) homeobox protein GBX-2 is ( 348) 700 82.9 1.2e-15 NP_055435 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264) 331 45.9 0.00012 NP_705897 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264) 331 45.9 0.00012 NP_002132 (OMIM: 142953) homeobox protein Hox-A4 [ ( 320) 317 44.6 0.00038 NP_076920 (OMIM: 142965) homeobox protein Hox-B4 [ ( 251) 311 43.9 0.00048 NP_061975 (OMIM: 142952) homeobox protein Hox-A5 [ ( 270) 311 43.9 0.00051 NP_061824 (OMIM: 142957) homeobox protein Hox-A10 ( 410) 315 44.5 0.00052 NP_004518 (OMIM: 214300,600147) homeobox protein M ( 254) 308 43.6 0.0006 NP_001288616 (OMIM: 601135) homeobox protein GBX-2 ( 222) 305 43.2 0.00067 XP_005257334 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 307 43.7 0.00093 NP_002137 (OMIM: 142966) homeobox protein Hox-B3 i ( 431) 307 43.7 0.00093 XP_011523022 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 307 43.7 0.00093 XP_006721917 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 307 43.7 0.00093 XP_011523021 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 307 43.7 0.00093 XP_011523012 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 307 43.7 0.00093 NP_002136 (OMIM: 142967) homeobox protein Hox-B2 [ ( 356) 305 43.4 0.00093 XP_016880046 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 308 43.9 0.0011 XP_016880051 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 308 43.9 0.0011 XP_016880048 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 308 43.9 0.0011 XP_016880049 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 308 43.9 0.0011 XP_016880050 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 308 43.9 0.0011 XP_016880047 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 308 43.9 0.0011 XP_016880052 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 308 43.9 0.0011 XP_011523009 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 308 43.9 0.0011 XP_011523023 (OMIM: 142966) PREDICTED: homeobox pr ( 430) 303 43.3 0.0012 XP_011523028 (OMIM: 142966) PREDICTED: homeobox pr ( 358) 299 42.8 0.0014 NP_001317251 (OMIM: 142966) homeobox protein Hox-B ( 358) 299 42.8 0.0014 NP_000200 (OMIM: 125853,260370,600733,606176,60639 ( 283) 294 42.2 0.0017 XP_006715778 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 297 42.7 0.0019 NP_109377 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 297 42.7 0.0019 XP_005249787 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 297 42.7 0.0019 XP_005249788 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 297 42.7 0.0019 XP_005249789 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 297 42.7 0.0019 XP_011513645 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 297 42.7 0.0019 NP_705895 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 297 42.7 0.0019 NP_001980 (OMIM: 142996) homeobox even-skipped hom ( 407) 294 42.4 0.0022 NP_001317252 (OMIM: 142966) homeobox protein Hox-B ( 299) 287 41.6 0.0029 NP_061815 (OMIM: 142992,612109) homeobox protein H ( 348) 286 41.5 0.0034 XP_011523010 (OMIM: 142966) PREDICTED: homeobox pr ( 488) 287 41.8 0.0041 NP_001099044 (OMIM: 613380) homeobox protein HMX3 ( 357) 283 41.2 0.0043 NP_001035091 (OMIM: 214300,600147) homeobox protei ( 139) 273 39.8 0.0044 NP_006726 (OMIM: 604685,612290) homeobox protein H ( 376) 279 40.8 0.0059 NP_067545 (OMIM: 603260) homeobox protein BarH-lik ( 254) 273 40.1 0.0067 NP_055436 (OMIM: 142981) homeobox protein Hox-D4 [ ( 255) 272 40.0 0.0072 NP_002138 (OMIM: 142960) homeobox protein Hox-B5 [ ( 269) 269 39.7 0.0092 >>NP_001092304 (OMIM: 603354) homeobox protein GBX-1 [Ho (363 aa) initn: 2466 init1: 2466 opt: 2466 Z-score: 1354.9 bits: 259.3 E(85289): 9.9e-69 Smith-Waterman score: 2466; 100.0% identity (100.0% similar) in 363 aa overlap (1-363:1-363) 10 20 30 40 50 60 pF1KE0 MQRAGGGSAPGGNGGGGGGGPGTAFSIDSLIGPPPPRSGHLLYTGYPMFMPYRPLVLPQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MQRAGGGSAPGGNGGGGGGGPGTAFSIDSLIGPPPPRSGHLLYTGYPMFMPYRPLVLPQA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE0 LAPAPLPAGLPPLAPLASFAGRLTNTFCAGLGQAVPSMVALTTALPSFAEPPDAFYGPQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LAPAPLPAGLPPLAPLASFAGRLTNTFCAGLGQAVPSMVALTTALPSFAEPPDAFYGPQE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE0 LAAAAAAAAATAARNNPEPGGRRPEGGLEADELLPAREKVAEPPPPPPPHFSETFPSLPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LAAAAAAAAATAARNNPEPGGRRPEGGLEADELLPAREKVAEPPPPPPPHFSETFPSLPA 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE0 EGKVYSSDEEKLEASAGDPAGSEQEEEGSGGDSEDDGFLDSSAGGPGALLGPKPKLKGSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 EGKVYSSDEEKLEASAGDPAGSEQEEEGSGGDSEDDGFLDSSAGGPGALLGPKPKLKGSL 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE0 GTGAEEGAPVTAGVTAPGGKSRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GTGAEEGAPVTAGVTAPGGKSRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKL 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE0 SEVQVKIWFQNRRAKWKRIKAGNVSSRSGEPVRNPKIVVPIPVHVNRFAVRSQHQQMEQG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SEVQVKIWFQNRRAKWKRIKAGNVSSRSGEPVRNPKIVVPIPVHVNRFAVRSQHQQMEQG 310 320 330 340 350 360 pF1KE0 ARP ::: NP_001 ARP >>XP_016867453 (OMIM: 603354) PREDICTED: homeobox protei (204 aa) initn: 1215 init1: 1215 opt: 1222 Z-score: 686.6 bits: 134.8 E(85289): 1.7e-31 Smith-Waterman score: 1222; 91.9% identity (92.3% similar) in 209 aa overlap (155-363:4-204) 130 140 150 160 170 180 pF1KE0 AAAAAATAARNNPEPGGRRPEGGLEADELLPAREKVAEPPPPPPPHFSETFPSLPAEGKV : : ::: :: . : ::::: XP_016 MRTPRRSAKAEP-------FSPRL-SCQAEGKV 10 20 190 200 210 220 230 240 pF1KE0 YSSDEEKLEASAGDPAGSEQEEEGSGGDSEDDGFLDSSAGGPGALLGPKPKLKGSLGTGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 YSSDEEKLEASAGDPAGSEQEEEGSGGDSEDDGFLDSSAGGPGALLGPKPKLKGSLGTGA 30 40 50 60 70 80 250 260 270 280 290 300 pF1KE0 EEGAPVTAGVTAPGGKSRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 EEGAPVTAGVTAPGGKSRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQ 90 100 110 120 130 140 310 320 330 340 350 360 pF1KE0 VKIWFQNRRAKWKRIKAGNVSSRSGEPVRNPKIVVPIPVHVNRFAVRSQHQQMEQGARP ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 VKIWFQNRRAKWKRIKAGNVSSRSGEPVRNPKIVVPIPVHVNRFAVRSQHQQMEQGARP 150 160 170 180 190 200 >>XP_016867454 (OMIM: 603354) PREDICTED: homeobox protei (203 aa) initn: 1208 init1: 1208 opt: 1210 Z-score: 680.1 bits: 133.6 E(85289): 3.8e-31 Smith-Waterman score: 1212; 91.4% identity (91.4% similar) in 210 aa overlap (155-363:4-203) 130 140 150 160 170 180 pF1KE0 AAAAAATAARNNPEPGGRRPEGGLEADELLPAREKVAEPPPPPPPHFSETFPSLPA-EGK : : ::: :: : : ::: XP_016 MRTPRRSAKAEP-------FS---PRLSCQEGK 10 20 190 200 210 220 230 240 pF1KE0 VYSSDEEKLEASAGDPAGSEQEEEGSGGDSEDDGFLDSSAGGPGALLGPKPKLKGSLGTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 VYSSDEEKLEASAGDPAGSEQEEEGSGGDSEDDGFLDSSAGGPGALLGPKPKLKGSLGTG 30 40 50 60 70 80 250 260 270 280 290 300 pF1KE0 AEEGAPVTAGVTAPGGKSRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 AEEGAPVTAGVTAPGGKSRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEV 90 100 110 120 130 140 310 320 330 340 350 360 pF1KE0 QVKIWFQNRRAKWKRIKAGNVSSRSGEPVRNPKIVVPIPVHVNRFAVRSQHQQMEQGARP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 QVKIWFQNRRAKWKRIKAGNVSSRSGEPVRNPKIVVPIPVHVNRFAVRSQHQQMEQGARP 150 160 170 180 190 200 >>NP_001476 (OMIM: 601135) homeobox protein GBX-2 isofor (348 aa) initn: 801 init1: 639 opt: 700 Z-score: 401.8 bits: 82.9 E(85289): 1.2e-15 Smith-Waterman score: 947; 51.9% identity (66.7% similar) in 360 aa overlap (20-363:17-348) 10 20 30 40 50 pF1KE0 MQRAGGGSAPGGNGGGGGGGPGTAFSIDSLIGPPP-PRSGHLLYTGYPMFMPYRPLVLPQ : .:::::::::: :: : ::..::::::::::::.::: NP_001 MSAAFPPSLMMMQRPLGSSTAFSIDSLIGSPPQPSPGHFVYTGYPMFMPYRPVVLPP 10 20 30 40 50 60 70 80 90 100 110 pF1KE0 ALAPAP-LPAG-----LPPLAPLASFAGRLTNTFCAGLGQAVPSMVALTTALPSFAEPPD : : :: . ::: : .. . : . ::..:.:.. :::..: .: : NP_001 PPPPPPALPQAALQPALPPAHPHHQIPS-LPTGFCSSLAQGM----ALTSTL--MATLPG 60 70 80 90 100 110 120 130 140 150 160 pF1KE0 AFYG-PQELAAAAAAAAATAARNNPEPGGRRPEGGLEADELLPAREK-----VAEPPPPP .: . ::. :::: : .: ::: :... : : : . .:. NP_001 GFSASPQHQEAAAARKFAP----QPLPGG----GNFDKAEALQADAEDGKGFLAKEGSLL 120 130 140 150 160 170 180 190 200 210 220 pF1KE0 PPHFSETFP-SLPAEGKVYSSDEEKLEASAGDPAGSEQEEEGSGGDSEDDGFLDSSAGGP .:: :: . . ..:: :.: :: : .::. . .:. : :.. : NP_001 AFSAAETVQASLVGAVRGQGKDESKVE---DDPKG---KEESFSLESDVDYSSDDNLTGQ 170 180 190 200 210 230 240 250 260 270 280 pF1KE0 GALLGPKPKLKGSLGTGAEEGAPVT--AGVTAPGGKSRRRRTAFTSEQLLELEKEFHCKK .: : : . :: : . :: :. ::.::::::::::::::::::::::: NP_001 AAHKEEDP------GHALEETPPSSGAAGSTTSTGKNRRRRTAFTSEQLLELEKEFHCKK 220 230 240 250 260 270 290 300 310 320 330 340 pF1KE0 YLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRIKAGNVSSRSGEPVRNPKIVVPIPVH ::::::::::::::::::::::::::::::::::.::::..:..::: :::::::::::: NP_001 YLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRVKAGNANSKTGEPSRNPKIVVPIPVH 280 290 300 310 320 330 350 360 pF1KE0 VNRFAVRSQHQQMEQGARP :.:::.::::::.:: ::: NP_001 VSRFAIRSQHQQLEQ-ARP 340 >>NP_055435 (OMIM: 142974) homeobox protein Hox-C4 [Homo (264 aa) initn: 425 init1: 267 opt: 331 Z-score: 204.1 bits: 45.9 E(85289): 0.00012 Smith-Waterman score: 331; 34.0% identity (55.8% similar) in 206 aa overlap (135-331:32-227) 110 120 130 140 150 160 pF1KE0 LPSFAEPPDAFYGPQELAAAAAAAAATAARNNPEPGGRRPEGGLEADELLPAREKVAEPP ..:: :: :.:.. ... :: NP_055 IMSSYLMDSNYIDPKFPPCEEYSQNSYIPEHSPEYYGRTRESGFQH------HHQELYPP 10 20 30 40 50 170 180 190 200 210 220 pF1KE0 PPPPPHFSET-FPSLPAEGKVYSSDEEKLEASAGDPAGSEQEEEGSGGDSEDDGFLDSSA ::: : . : . .: : . .:. : :.. : . .: : . NP_055 PPPRPSYPERQYSCTSLQGPGNSRGHGPAQAGHHHPEKSQSLCE----PAPLSGASASPS 60 70 80 90 100 110 230 240 250 260 270 pF1KE0 GGPGALLGPKPKLKGSLGTGAEEGAP----VTAGVTAP---GGKSRRRRTAFTSEQLLEL .: : : : .: .. : . .... : ::. .: :::.: .:.::: NP_055 PAPPACSQPAPDHPSSAASKQPIVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLEL 120 130 140 150 160 170 280 290 300 310 320 330 pF1KE0 EKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRI-KAGNVSSRSGEPVRNP ::::: ..::. .: .:::.: ::: :.:::::::: :::. . :.. ::. : NP_055 EKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAA 180 190 200 210 220 230 340 350 360 pF1KE0 KIVVPIPVHVNRFAVRSQHQQMEQGARP NP_055 PSTLSAATPGTSEDHSQSATPPEQQRAEDITRL 240 250 260 >>NP_705897 (OMIM: 142974) homeobox protein Hox-C4 [Homo (264 aa) initn: 425 init1: 267 opt: 331 Z-score: 204.1 bits: 45.9 E(85289): 0.00012 Smith-Waterman score: 331; 34.0% identity (55.8% similar) in 206 aa overlap (135-331:32-227) 110 120 130 140 150 160 pF1KE0 LPSFAEPPDAFYGPQELAAAAAAAAATAARNNPEPGGRRPEGGLEADELLPAREKVAEPP ..:: :: :.:.. ... :: NP_705 IMSSYLMDSNYIDPKFPPCEEYSQNSYIPEHSPEYYGRTRESGFQH------HHQELYPP 10 20 30 40 50 170 180 190 200 210 220 pF1KE0 PPPPPHFSET-FPSLPAEGKVYSSDEEKLEASAGDPAGSEQEEEGSGGDSEDDGFLDSSA ::: : . : . .: : . .:. : :.. : . .: : . NP_705 PPPRPSYPERQYSCTSLQGPGNSRGHGPAQAGHHHPEKSQSLCE----PAPLSGASASPS 60 70 80 90 100 110 230 240 250 260 270 pF1KE0 GGPGALLGPKPKLKGSLGTGAEEGAP----VTAGVTAP---GGKSRRRRTAFTSEQLLEL .: : : : .: .. : . .... : ::. .: :::.: .:.::: NP_705 PAPPACSQPAPDHPSSAASKQPIVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLEL 120 130 140 150 160 170 280 290 300 310 320 330 pF1KE0 EKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRI-KAGNVSSRSGEPVRNP ::::: ..::. .: .:::.: ::: :.:::::::: :::. . :.. ::. : NP_705 EKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAA 180 190 200 210 220 230 340 350 360 pF1KE0 KIVVPIPVHVNRFAVRSQHQQMEQGARP NP_705 PSTLSAATPGTSEDHSQSATPPEQQRAEDITRL 240 250 260 >>NP_002132 (OMIM: 142953) homeobox protein Hox-A4 [Homo (320 aa) initn: 385 init1: 268 opt: 317 Z-score: 195.5 bits: 44.6 E(85289): 0.00038 Smith-Waterman score: 340; 32.2% identity (49.5% similar) in 323 aa overlap (8-328:27-283) 10 20 30 40 pF1KE0 MQRAGGGSAPGGNGGGGGGGPGTAFSIDSLIGPPPPRSGHL :. :: :: ::::: :: : . :: NP_002 MTMSSFLINSNYIEPKFPPFEEYAQHSGSGGADGGPGGGPGYQ-------QPPAPPTQHL 10 20 30 40 50 50 60 70 80 90 100 pF1KE0 LYTGYPMFMPYRPLVLPQALAPAPLPAGLPPLAPLASFAGRLTNTFCAGLGQAVPSMVAL :. .: ::.: .: : : . .: : . . :. : NP_002 -----PLQQPQ----LPHA------GGGREPTA--SYYAPRTAREPAYPAAALYPAHGAA 60 70 80 90 110 120 130 140 150 160 pF1KE0 TTALPSFAEPPDAFYGPQELAAAAAAAAATAARNNPEPGGRRPEGGLEADELLPAREKVA :: : :: . ..:. . ..: .. : ::.:...: NP_002 DTAYP---------YGYR----GGASPGRPPQPEQPPAQAKGPAHGLHASHVL------- 100 110 120 130 170 180 190 200 210 220 pF1KE0 EPPPPPPPHFSETFPSLPAEGKVYSSDEEKLEASAGDPAGSEQEEEGSGGDSEDDGFLDS .: ::: . . :. : . : :. : ::: ::. . . :. NP_002 QPQLPPPLQPRAVPPAAPRRC-------EAAPATPGVPAG------GSA-PACPLLLADK 140 150 160 170 180 230 240 250 260 270 280 pF1KE0 SAGGPGALLGPKPKLKGSLGTGAEEGAPVTA-GVTAPGGKSRRRRTAFTSEQLLELEKEF : : .: : .: . . . :.: . . ::. .: :::.: .:.::::::: NP_002 S---PLGLKGKEPVVYPWM-----KKIHVSAVNPSYNGGEPKRSRTAYTRQQVLELEKEF 190 200 210 220 230 290 300 310 320 330 pF1KE0 HCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRI-KAGNVSSRSGEPVRNPKIVV : ..::. .: .:::.: ::: :::::::::: :::. : :.. :: NP_002 HFNRYLTRRRRIEIAHTLCLSERQVKIWFQNRRMKWKKDHKLPNTKMRSSNSASASAGPP 240 250 260 270 280 290 340 350 360 pF1KE0 PIPVHVNRFAVRSQHQQMEQGARP NP_002 GKAQTQSPHLHPHPHPSTSTPVPSSI 300 310 320 >>NP_076920 (OMIM: 142965) homeobox protein Hox-B4 [Homo (251 aa) initn: 388 init1: 272 opt: 311 Z-score: 193.6 bits: 43.9 E(85289): 0.00048 Smith-Waterman score: 328; 34.5% identity (53.6% similar) in 235 aa overlap (105-329:17-231) 80 90 100 110 120 130 pF1KE0 PLASFAGRLTNTFCAGLGQAVPSMVALTTALPSFAEPPDAFYGPQELAAAAAAAAATAAR .: : .. : :.. . . :.. NP_076 MAMSSFLINSNYVDPKFPPCEEYSQSDYLPSDHSPGYYAGGQRRES 10 20 30 40 140 150 160 170 180 190 pF1KE0 N-NPEPG-GRRPEGGLEADELLPAREKVAEPPPPPPPHFSETFPSLPAEGKVYSSDEEKL . .:: : ::: .. ... :. ::::::: : : : : NP_076 SFQPEAGFGRR--AACTVQRYAACRDPGPPPPPPPPP------PPPPPPG--LSP----- 50 60 70 80 90 200 210 220 230 240 pF1KE0 EASAGDPAGSEQEEEGSGGDSEDDGFLDSSAGGPGALLGPKPKLKGSLGTGAEEGAP--- .: : :::. : :. .. ..:: : .: . . : NP_076 RAPAPPPAGALLPEPGQRCEA-----VSSSPPPPPCAQNPLHPSPSHSACKEPVVYPWMR 100 110 120 130 140 250 260 270 280 290 300 pF1KE0 -VTAGVTAP---GGKSRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQV : .... : ::. .: :::.: .:.:::::::: ..::. .: .::::: ::: :. NP_076 KVHVSTVNPNYAGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRVEIAHALCLSERQI 150 160 170 180 190 200 310 320 330 340 350 360 pF1KE0 KIWFQNRRAKWKRI-KAGNVSSRSGEPVRNPKIVVPIPVHVNRFAVRSQHQQMEQGARP :::::::: :::. : :.. ::: NP_076 KIWFQNRRMKWKKDHKLPNTKIRSGGAAGSAGGPPGRPNGGPRAL 210 220 230 240 250 >>NP_061975 (OMIM: 142952) homeobox protein Hox-A5 [Homo (270 aa) initn: 301 init1: 241 opt: 311 Z-score: 193.2 bits: 43.9 E(85289): 0.00051 Smith-Waterman score: 311; 34.6% identity (56.9% similar) in 188 aa overlap (141-318:67-252) 120 130 140 150 160 pF1KE0 PPDAFYGPQELAAAAAAAAATAARNNPEPGGRRPEGGLEADELLPAREKVAEP------P :.: .. . ::. . ..: : NP_061 SASMHSGRYGYGYNGMDLSVGRSGSGHFGSGERARSYAASASAAPAEPRYSQPATSTHSP 40 50 60 70 80 90 170 180 190 200 210 220 pF1KE0 PPPPPHFSETFPSLPAE----GKVYSSDEEKLEASAGDPAGSEQEEEGSGGDSEDDGFLD : : : . :: .. :: :. :.::. : .: :... .:.:. . NP_061 QPDPLPCSAVAPSPGSDSHHGGKNSLSNSSGASADAGSTHISSREGVGTASGAEEDAPAS 100 110 120 130 140 150 230 240 250 260 270 280 pF1KE0 SSAGGPGALLGPKPKLKGSLGTGAEEGAPVTAGVTAPGGKSRRRRTAFTSEQLLELEKEF : .. . .: : . .. .. .. .: :: : :::.: : ::::::: NP_061 SEQASAQSEPSPAPPAQPQIYPWMRKLHISHDNIGGPEGK--RARTAYTRYQTLELEKEF 160 170 180 190 200 210 290 300 310 320 330 340 pF1KE0 HCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRIKAGNVSSRSGEPVRNPKIVVP : ..::. .: .::::: ::: :.:::::::: :::. NP_061 HFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLKSMSMAAAGGAFRP 220 230 240 250 260 270 350 360 pF1KE0 IPVHVNRFAVRSQHQQMEQGARP >>NP_061824 (OMIM: 142957) homeobox protein Hox-A10 [Hom (410 aa) initn: 277 init1: 154 opt: 315 Z-score: 193.0 bits: 44.5 E(85289): 0.00052 Smith-Waterman score: 347; 29.9% identity (52.2% similar) in 335 aa overlap (8-323:92-398) 10 20 30 pF1KE0 MQRAGGGSAPGGNGGGGGGGPGTAFSIDSLIGPPP-- ..::..::::: :::. :: : NP_061 GVYLPPAADLPYGLQSCGLFPTLGGKRNEAASPGSGGGGGGLGPGA-----HGYGPSPID 70 80 90 100 110 40 50 60 70 80 pF1KE0 -----PRSGHLLYTGYPMFMPYRPLVLPQALAPAPLPAGLPPLAPLASFAGRLT--NTFC ::: .. : : : : : : : : : ::: . ...: NP_061 LWLDAPRSCRMEPPDGP---PPPPQQQP---PPPPQPPQPAPQATSCSFAQNIKEESSYC 120 130 140 150 160 170 90 100 110 120 130 140 pF1KE0 A-GLGQAVPSMVALTTALPSFAE--PPDAFYGPQELAAAAAAAAATAARNNPEPGGRRPE .. :.. : .. : : . :::. :...... . : . : . NP_061 LYDSADKCPKVSATAAELAPFPRGPPPDGC----ALGTSSGVPVPGYFRLSQAYGTAKGY 180 190 200 210 220 150 160 170 180 190 200 pF1KE0 GGLEADELLPAREKVAEPPPPPPPHFSETFPSLPAEGKVYSSDEEKLEASAGDPAGSEQE :. . :.. : : : :: . .: : :.. .. .:. : :. . NP_061 GSGGGG----AQQLGAGPFPAQPPGRGFDLPPALASGSADAARKERALDSPPPPTLAC-- 230 240 250 260 270 280 210 220 230 240 250 pF1KE0 EEGSGGDSEDDGFLDSSAGGPGALLGPKPKL-------KGSLGTGAEEGAPVTAGVTAPG :::: :. : .:... . :.: :. : :::.. :.: . .:: . NP_061 --GSGGGSQGDEEAHASSSA-AEELSPAPSESSKASPEKDSLGNSKGENA--ANWLTAKS 290 300 310 320 330 260 270 280 290 300 310 pF1KE0 GKSRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKR : :..: .:..: ::::::: . ::. .: .:.....:.. :::::::::: : :. NP_061 G--RKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKK 340 350 360 370 380 390 320 330 340 350 360 pF1KE0 IKAGNVSSRSGEPVRNPKIVVPIPVHVNRFAVRSQHQQMEQGARP .. : NP_061 MNRENRIRELTANFNFS 400 410 363 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 04:28:16 2016 done: Tue Nov 8 04:28:18 2016 Total Scan time: 9.540 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]