Result of FASTA (omim) for
pFN21AE0612
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0612, 363 aa
1>>>pF1KE0612 363 - 363 aa - 363 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.3331+/-0.000351; mu= -3.9999+/- 0.022
mean_var=343.1211+/-69.843, 0's: 0 Z-trim(125.3): 208 B-trim: 0 in 0/58
Lambda= 0.069239
statistics sampled from 48397 (48650) to 48397 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.828), E-opt: 0.2 (0.57), width: 16
Scan time: 9.540
The best scores are: opt bits E(85289)
NP_001092304 (OMIM: 603354) homeobox protein GBX-1 ( 363) 2466 259.3 9.9e-69
XP_016867453 (OMIM: 603354) PREDICTED: homeobox pr ( 204) 1222 134.8 1.7e-31
XP_016867454 (OMIM: 603354) PREDICTED: homeobox pr ( 203) 1210 133.6 3.8e-31
NP_001476 (OMIM: 601135) homeobox protein GBX-2 is ( 348) 700 82.9 1.2e-15
NP_055435 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264) 331 45.9 0.00012
NP_705897 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264) 331 45.9 0.00012
NP_002132 (OMIM: 142953) homeobox protein Hox-A4 [ ( 320) 317 44.6 0.00038
NP_076920 (OMIM: 142965) homeobox protein Hox-B4 [ ( 251) 311 43.9 0.00048
NP_061975 (OMIM: 142952) homeobox protein Hox-A5 [ ( 270) 311 43.9 0.00051
NP_061824 (OMIM: 142957) homeobox protein Hox-A10 ( 410) 315 44.5 0.00052
NP_004518 (OMIM: 214300,600147) homeobox protein M ( 254) 308 43.6 0.0006
NP_001288616 (OMIM: 601135) homeobox protein GBX-2 ( 222) 305 43.2 0.00067
XP_005257334 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 307 43.7 0.00093
NP_002137 (OMIM: 142966) homeobox protein Hox-B3 i ( 431) 307 43.7 0.00093
XP_011523022 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 307 43.7 0.00093
XP_006721917 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 307 43.7 0.00093
XP_011523021 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 307 43.7 0.00093
XP_011523012 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 307 43.7 0.00093
NP_002136 (OMIM: 142967) homeobox protein Hox-B2 [ ( 356) 305 43.4 0.00093
XP_016880046 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 308 43.9 0.0011
XP_016880051 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 308 43.9 0.0011
XP_016880048 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 308 43.9 0.0011
XP_016880049 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 308 43.9 0.0011
XP_016880050 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 308 43.9 0.0011
XP_016880047 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 308 43.9 0.0011
XP_016880052 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 308 43.9 0.0011
XP_011523009 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 308 43.9 0.0011
XP_011523023 (OMIM: 142966) PREDICTED: homeobox pr ( 430) 303 43.3 0.0012
XP_011523028 (OMIM: 142966) PREDICTED: homeobox pr ( 358) 299 42.8 0.0014
NP_001317251 (OMIM: 142966) homeobox protein Hox-B ( 358) 299 42.8 0.0014
NP_000200 (OMIM: 125853,260370,600733,606176,60639 ( 283) 294 42.2 0.0017
XP_006715778 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 297 42.7 0.0019
NP_109377 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 297 42.7 0.0019
XP_005249787 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 297 42.7 0.0019
XP_005249788 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 297 42.7 0.0019
XP_005249789 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 297 42.7 0.0019
XP_011513645 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 297 42.7 0.0019
NP_705895 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 297 42.7 0.0019
NP_001980 (OMIM: 142996) homeobox even-skipped hom ( 407) 294 42.4 0.0022
NP_001317252 (OMIM: 142966) homeobox protein Hox-B ( 299) 287 41.6 0.0029
NP_061815 (OMIM: 142992,612109) homeobox protein H ( 348) 286 41.5 0.0034
XP_011523010 (OMIM: 142966) PREDICTED: homeobox pr ( 488) 287 41.8 0.0041
NP_001099044 (OMIM: 613380) homeobox protein HMX3 ( 357) 283 41.2 0.0043
NP_001035091 (OMIM: 214300,600147) homeobox protei ( 139) 273 39.8 0.0044
NP_006726 (OMIM: 604685,612290) homeobox protein H ( 376) 279 40.8 0.0059
NP_067545 (OMIM: 603260) homeobox protein BarH-lik ( 254) 273 40.1 0.0067
NP_055436 (OMIM: 142981) homeobox protein Hox-D4 [ ( 255) 272 40.0 0.0072
NP_002138 (OMIM: 142960) homeobox protein Hox-B5 [ ( 269) 269 39.7 0.0092
>>NP_001092304 (OMIM: 603354) homeobox protein GBX-1 [Ho (363 aa)
initn: 2466 init1: 2466 opt: 2466 Z-score: 1354.9 bits: 259.3 E(85289): 9.9e-69
Smith-Waterman score: 2466; 100.0% identity (100.0% similar) in 363 aa overlap (1-363:1-363)
10 20 30 40 50 60
pF1KE0 MQRAGGGSAPGGNGGGGGGGPGTAFSIDSLIGPPPPRSGHLLYTGYPMFMPYRPLVLPQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MQRAGGGSAPGGNGGGGGGGPGTAFSIDSLIGPPPPRSGHLLYTGYPMFMPYRPLVLPQA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 LAPAPLPAGLPPLAPLASFAGRLTNTFCAGLGQAVPSMVALTTALPSFAEPPDAFYGPQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LAPAPLPAGLPPLAPLASFAGRLTNTFCAGLGQAVPSMVALTTALPSFAEPPDAFYGPQE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 LAAAAAAAAATAARNNPEPGGRRPEGGLEADELLPAREKVAEPPPPPPPHFSETFPSLPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LAAAAAAAAATAARNNPEPGGRRPEGGLEADELLPAREKVAEPPPPPPPHFSETFPSLPA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 EGKVYSSDEEKLEASAGDPAGSEQEEEGSGGDSEDDGFLDSSAGGPGALLGPKPKLKGSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EGKVYSSDEEKLEASAGDPAGSEQEEEGSGGDSEDDGFLDSSAGGPGALLGPKPKLKGSL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 GTGAEEGAPVTAGVTAPGGKSRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GTGAEEGAPVTAGVTAPGGKSRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE0 SEVQVKIWFQNRRAKWKRIKAGNVSSRSGEPVRNPKIVVPIPVHVNRFAVRSQHQQMEQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SEVQVKIWFQNRRAKWKRIKAGNVSSRSGEPVRNPKIVVPIPVHVNRFAVRSQHQQMEQG
310 320 330 340 350 360
pF1KE0 ARP
:::
NP_001 ARP
>>XP_016867453 (OMIM: 603354) PREDICTED: homeobox protei (204 aa)
initn: 1215 init1: 1215 opt: 1222 Z-score: 686.6 bits: 134.8 E(85289): 1.7e-31
Smith-Waterman score: 1222; 91.9% identity (92.3% similar) in 209 aa overlap (155-363:4-204)
130 140 150 160 170 180
pF1KE0 AAAAAATAARNNPEPGGRRPEGGLEADELLPAREKVAEPPPPPPPHFSETFPSLPAEGKV
: : ::: :: . : :::::
XP_016 MRTPRRSAKAEP-------FSPRL-SCQAEGKV
10 20
190 200 210 220 230 240
pF1KE0 YSSDEEKLEASAGDPAGSEQEEEGSGGDSEDDGFLDSSAGGPGALLGPKPKLKGSLGTGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YSSDEEKLEASAGDPAGSEQEEEGSGGDSEDDGFLDSSAGGPGALLGPKPKLKGSLGTGA
30 40 50 60 70 80
250 260 270 280 290 300
pF1KE0 EEGAPVTAGVTAPGGKSRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EEGAPVTAGVTAPGGKSRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQ
90 100 110 120 130 140
310 320 330 340 350 360
pF1KE0 VKIWFQNRRAKWKRIKAGNVSSRSGEPVRNPKIVVPIPVHVNRFAVRSQHQQMEQGARP
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VKIWFQNRRAKWKRIKAGNVSSRSGEPVRNPKIVVPIPVHVNRFAVRSQHQQMEQGARP
150 160 170 180 190 200
>>XP_016867454 (OMIM: 603354) PREDICTED: homeobox protei (203 aa)
initn: 1208 init1: 1208 opt: 1210 Z-score: 680.1 bits: 133.6 E(85289): 3.8e-31
Smith-Waterman score: 1212; 91.4% identity (91.4% similar) in 210 aa overlap (155-363:4-203)
130 140 150 160 170 180
pF1KE0 AAAAAATAARNNPEPGGRRPEGGLEADELLPAREKVAEPPPPPPPHFSETFPSLPA-EGK
: : ::: :: : : :::
XP_016 MRTPRRSAKAEP-------FS---PRLSCQEGK
10 20
190 200 210 220 230 240
pF1KE0 VYSSDEEKLEASAGDPAGSEQEEEGSGGDSEDDGFLDSSAGGPGALLGPKPKLKGSLGTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VYSSDEEKLEASAGDPAGSEQEEEGSGGDSEDDGFLDSSAGGPGALLGPKPKLKGSLGTG
30 40 50 60 70 80
250 260 270 280 290 300
pF1KE0 AEEGAPVTAGVTAPGGKSRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AEEGAPVTAGVTAPGGKSRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEV
90 100 110 120 130 140
310 320 330 340 350 360
pF1KE0 QVKIWFQNRRAKWKRIKAGNVSSRSGEPVRNPKIVVPIPVHVNRFAVRSQHQQMEQGARP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QVKIWFQNRRAKWKRIKAGNVSSRSGEPVRNPKIVVPIPVHVNRFAVRSQHQQMEQGARP
150 160 170 180 190 200
>>NP_001476 (OMIM: 601135) homeobox protein GBX-2 isofor (348 aa)
initn: 801 init1: 639 opt: 700 Z-score: 401.8 bits: 82.9 E(85289): 1.2e-15
Smith-Waterman score: 947; 51.9% identity (66.7% similar) in 360 aa overlap (20-363:17-348)
10 20 30 40 50
pF1KE0 MQRAGGGSAPGGNGGGGGGGPGTAFSIDSLIGPPP-PRSGHLLYTGYPMFMPYRPLVLPQ
: .:::::::::: :: : ::..::::::::::::.:::
NP_001 MSAAFPPSLMMMQRPLGSSTAFSIDSLIGSPPQPSPGHFVYTGYPMFMPYRPVVLPP
10 20 30 40 50
60 70 80 90 100 110
pF1KE0 ALAPAP-LPAG-----LPPLAPLASFAGRLTNTFCAGLGQAVPSMVALTTALPSFAEPPD
: : :: . ::: : .. . : . ::..:.:.. :::..: .: :
NP_001 PPPPPPALPQAALQPALPPAHPHHQIPS-LPTGFCSSLAQGM----ALTSTL--MATLPG
60 70 80 90 100 110
120 130 140 150 160
pF1KE0 AFYG-PQELAAAAAAAAATAARNNPEPGGRRPEGGLEADELLPAREK-----VAEPPPPP
.: . ::. :::: : .: ::: :... : : : . .:.
NP_001 GFSASPQHQEAAAARKFAP----QPLPGG----GNFDKAEALQADAEDGKGFLAKEGSLL
120 130 140 150 160
170 180 190 200 210 220
pF1KE0 PPHFSETFP-SLPAEGKVYSSDEEKLEASAGDPAGSEQEEEGSGGDSEDDGFLDSSAGGP
.:: :: . . ..:: :.: :: : .::. . .:. : :.. :
NP_001 AFSAAETVQASLVGAVRGQGKDESKVE---DDPKG---KEESFSLESDVDYSSDDNLTGQ
170 180 190 200 210
230 240 250 260 270 280
pF1KE0 GALLGPKPKLKGSLGTGAEEGAPVT--AGVTAPGGKSRRRRTAFTSEQLLELEKEFHCKK
.: : : . :: : . :: :. ::.:::::::::::::::::::::::
NP_001 AAHKEEDP------GHALEETPPSSGAAGSTTSTGKNRRRRTAFTSEQLLELEKEFHCKK
220 230 240 250 260 270
290 300 310 320 330 340
pF1KE0 YLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRIKAGNVSSRSGEPVRNPKIVVPIPVH
::::::::::::::::::::::::::::::::::.::::..:..::: ::::::::::::
NP_001 YLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRVKAGNANSKTGEPSRNPKIVVPIPVH
280 290 300 310 320 330
350 360
pF1KE0 VNRFAVRSQHQQMEQGARP
:.:::.::::::.:: :::
NP_001 VSRFAIRSQHQQLEQ-ARP
340
>>NP_055435 (OMIM: 142974) homeobox protein Hox-C4 [Homo (264 aa)
initn: 425 init1: 267 opt: 331 Z-score: 204.1 bits: 45.9 E(85289): 0.00012
Smith-Waterman score: 331; 34.0% identity (55.8% similar) in 206 aa overlap (135-331:32-227)
110 120 130 140 150 160
pF1KE0 LPSFAEPPDAFYGPQELAAAAAAAAATAARNNPEPGGRRPEGGLEADELLPAREKVAEPP
..:: :: :.:.. ... ::
NP_055 IMSSYLMDSNYIDPKFPPCEEYSQNSYIPEHSPEYYGRTRESGFQH------HHQELYPP
10 20 30 40 50
170 180 190 200 210 220
pF1KE0 PPPPPHFSET-FPSLPAEGKVYSSDEEKLEASAGDPAGSEQEEEGSGGDSEDDGFLDSSA
::: : . : . .: : . .:. : :.. : . .: : .
NP_055 PPPRPSYPERQYSCTSLQGPGNSRGHGPAQAGHHHPEKSQSLCE----PAPLSGASASPS
60 70 80 90 100 110
230 240 250 260 270
pF1KE0 GGPGALLGPKPKLKGSLGTGAEEGAP----VTAGVTAP---GGKSRRRRTAFTSEQLLEL
.: : : : .: .. : . .... : ::. .: :::.: .:.:::
NP_055 PAPPACSQPAPDHPSSAASKQPIVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLEL
120 130 140 150 160 170
280 290 300 310 320 330
pF1KE0 EKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRI-KAGNVSSRSGEPVRNP
::::: ..::. .: .:::.: ::: :.:::::::: :::. . :.. ::. :
NP_055 EKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAA
180 190 200 210 220 230
340 350 360
pF1KE0 KIVVPIPVHVNRFAVRSQHQQMEQGARP
NP_055 PSTLSAATPGTSEDHSQSATPPEQQRAEDITRL
240 250 260
>>NP_705897 (OMIM: 142974) homeobox protein Hox-C4 [Homo (264 aa)
initn: 425 init1: 267 opt: 331 Z-score: 204.1 bits: 45.9 E(85289): 0.00012
Smith-Waterman score: 331; 34.0% identity (55.8% similar) in 206 aa overlap (135-331:32-227)
110 120 130 140 150 160
pF1KE0 LPSFAEPPDAFYGPQELAAAAAAAAATAARNNPEPGGRRPEGGLEADELLPAREKVAEPP
..:: :: :.:.. ... ::
NP_705 IMSSYLMDSNYIDPKFPPCEEYSQNSYIPEHSPEYYGRTRESGFQH------HHQELYPP
10 20 30 40 50
170 180 190 200 210 220
pF1KE0 PPPPPHFSET-FPSLPAEGKVYSSDEEKLEASAGDPAGSEQEEEGSGGDSEDDGFLDSSA
::: : . : . .: : . .:. : :.. : . .: : .
NP_705 PPPRPSYPERQYSCTSLQGPGNSRGHGPAQAGHHHPEKSQSLCE----PAPLSGASASPS
60 70 80 90 100 110
230 240 250 260 270
pF1KE0 GGPGALLGPKPKLKGSLGTGAEEGAP----VTAGVTAP---GGKSRRRRTAFTSEQLLEL
.: : : : .: .. : . .... : ::. .: :::.: .:.:::
NP_705 PAPPACSQPAPDHPSSAASKQPIVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLEL
120 130 140 150 160 170
280 290 300 310 320 330
pF1KE0 EKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRI-KAGNVSSRSGEPVRNP
::::: ..::. .: .:::.: ::: :.:::::::: :::. . :.. ::. :
NP_705 EKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAA
180 190 200 210 220 230
340 350 360
pF1KE0 KIVVPIPVHVNRFAVRSQHQQMEQGARP
NP_705 PSTLSAATPGTSEDHSQSATPPEQQRAEDITRL
240 250 260
>>NP_002132 (OMIM: 142953) homeobox protein Hox-A4 [Homo (320 aa)
initn: 385 init1: 268 opt: 317 Z-score: 195.5 bits: 44.6 E(85289): 0.00038
Smith-Waterman score: 340; 32.2% identity (49.5% similar) in 323 aa overlap (8-328:27-283)
10 20 30 40
pF1KE0 MQRAGGGSAPGGNGGGGGGGPGTAFSIDSLIGPPPPRSGHL
:. :: :: ::::: :: : . ::
NP_002 MTMSSFLINSNYIEPKFPPFEEYAQHSGSGGADGGPGGGPGYQ-------QPPAPPTQHL
10 20 30 40 50
50 60 70 80 90 100
pF1KE0 LYTGYPMFMPYRPLVLPQALAPAPLPAGLPPLAPLASFAGRLTNTFCAGLGQAVPSMVAL
:. .: ::.: .: : : . .: : . . :. :
NP_002 -----PLQQPQ----LPHA------GGGREPTA--SYYAPRTAREPAYPAAALYPAHGAA
60 70 80 90
110 120 130 140 150 160
pF1KE0 TTALPSFAEPPDAFYGPQELAAAAAAAAATAARNNPEPGGRRPEGGLEADELLPAREKVA
:: : :: . ..:. . ..: .. : ::.:...:
NP_002 DTAYP---------YGYR----GGASPGRPPQPEQPPAQAKGPAHGLHASHVL-------
100 110 120 130
170 180 190 200 210 220
pF1KE0 EPPPPPPPHFSETFPSLPAEGKVYSSDEEKLEASAGDPAGSEQEEEGSGGDSEDDGFLDS
.: ::: . . :. : . : :. : ::: ::. . . :.
NP_002 QPQLPPPLQPRAVPPAAPRRC-------EAAPATPGVPAG------GSA-PACPLLLADK
140 150 160 170 180
230 240 250 260 270 280
pF1KE0 SAGGPGALLGPKPKLKGSLGTGAEEGAPVTA-GVTAPGGKSRRRRTAFTSEQLLELEKEF
: : .: : .: . . . :.: . . ::. .: :::.: .:.:::::::
NP_002 S---PLGLKGKEPVVYPWM-----KKIHVSAVNPSYNGGEPKRSRTAYTRQQVLELEKEF
190 200 210 220 230
290 300 310 320 330
pF1KE0 HCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRI-KAGNVSSRSGEPVRNPKIVV
: ..::. .: .:::.: ::: :::::::::: :::. : :.. ::
NP_002 HFNRYLTRRRRIEIAHTLCLSERQVKIWFQNRRMKWKKDHKLPNTKMRSSNSASASAGPP
240 250 260 270 280 290
340 350 360
pF1KE0 PIPVHVNRFAVRSQHQQMEQGARP
NP_002 GKAQTQSPHLHPHPHPSTSTPVPSSI
300 310 320
>>NP_076920 (OMIM: 142965) homeobox protein Hox-B4 [Homo (251 aa)
initn: 388 init1: 272 opt: 311 Z-score: 193.6 bits: 43.9 E(85289): 0.00048
Smith-Waterman score: 328; 34.5% identity (53.6% similar) in 235 aa overlap (105-329:17-231)
80 90 100 110 120 130
pF1KE0 PLASFAGRLTNTFCAGLGQAVPSMVALTTALPSFAEPPDAFYGPQELAAAAAAAAATAAR
.: : .. : :.. . . :..
NP_076 MAMSSFLINSNYVDPKFPPCEEYSQSDYLPSDHSPGYYAGGQRRES
10 20 30 40
140 150 160 170 180 190
pF1KE0 N-NPEPG-GRRPEGGLEADELLPAREKVAEPPPPPPPHFSETFPSLPAEGKVYSSDEEKL
. .:: : ::: .. ... :. ::::::: : : : :
NP_076 SFQPEAGFGRR--AACTVQRYAACRDPGPPPPPPPPP------PPPPPPG--LSP-----
50 60 70 80 90
200 210 220 230 240
pF1KE0 EASAGDPAGSEQEEEGSGGDSEDDGFLDSSAGGPGALLGPKPKLKGSLGTGAEEGAP---
.: : :::. : :. .. ..:: : .: . . :
NP_076 RAPAPPPAGALLPEPGQRCEA-----VSSSPPPPPCAQNPLHPSPSHSACKEPVVYPWMR
100 110 120 130 140
250 260 270 280 290 300
pF1KE0 -VTAGVTAP---GGKSRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQV
: .... : ::. .: :::.: .:.:::::::: ..::. .: .::::: ::: :.
NP_076 KVHVSTVNPNYAGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRVEIAHALCLSERQI
150 160 170 180 190 200
310 320 330 340 350 360
pF1KE0 KIWFQNRRAKWKRI-KAGNVSSRSGEPVRNPKIVVPIPVHVNRFAVRSQHQQMEQGARP
:::::::: :::. : :.. :::
NP_076 KIWFQNRRMKWKKDHKLPNTKIRSGGAAGSAGGPPGRPNGGPRAL
210 220 230 240 250
>>NP_061975 (OMIM: 142952) homeobox protein Hox-A5 [Homo (270 aa)
initn: 301 init1: 241 opt: 311 Z-score: 193.2 bits: 43.9 E(85289): 0.00051
Smith-Waterman score: 311; 34.6% identity (56.9% similar) in 188 aa overlap (141-318:67-252)
120 130 140 150 160
pF1KE0 PPDAFYGPQELAAAAAAAAATAARNNPEPGGRRPEGGLEADELLPAREKVAEP------P
:.: .. . ::. . ..: :
NP_061 SASMHSGRYGYGYNGMDLSVGRSGSGHFGSGERARSYAASASAAPAEPRYSQPATSTHSP
40 50 60 70 80 90
170 180 190 200 210 220
pF1KE0 PPPPPHFSETFPSLPAE----GKVYSSDEEKLEASAGDPAGSEQEEEGSGGDSEDDGFLD
: : : . :: .. :: :. :.::. : .: :... .:.:. .
NP_061 QPDPLPCSAVAPSPGSDSHHGGKNSLSNSSGASADAGSTHISSREGVGTASGAEEDAPAS
100 110 120 130 140 150
230 240 250 260 270 280
pF1KE0 SSAGGPGALLGPKPKLKGSLGTGAEEGAPVTAGVTAPGGKSRRRRTAFTSEQLLELEKEF
: .. . .: : . .. .. .. .: :: : :::.: : :::::::
NP_061 SEQASAQSEPSPAPPAQPQIYPWMRKLHISHDNIGGPEGK--RARTAYTRYQTLELEKEF
160 170 180 190 200 210
290 300 310 320 330 340
pF1KE0 HCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRIKAGNVSSRSGEPVRNPKIVVP
: ..::. .: .::::: ::: :.:::::::: :::.
NP_061 HFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLKSMSMAAAGGAFRP
220 230 240 250 260 270
350 360
pF1KE0 IPVHVNRFAVRSQHQQMEQGARP
>>NP_061824 (OMIM: 142957) homeobox protein Hox-A10 [Hom (410 aa)
initn: 277 init1: 154 opt: 315 Z-score: 193.0 bits: 44.5 E(85289): 0.00052
Smith-Waterman score: 347; 29.9% identity (52.2% similar) in 335 aa overlap (8-323:92-398)
10 20 30
pF1KE0 MQRAGGGSAPGGNGGGGGGGPGTAFSIDSLIGPPP--
..::..::::: :::. :: :
NP_061 GVYLPPAADLPYGLQSCGLFPTLGGKRNEAASPGSGGGGGGLGPGA-----HGYGPSPID
70 80 90 100 110
40 50 60 70 80
pF1KE0 -----PRSGHLLYTGYPMFMPYRPLVLPQALAPAPLPAGLPPLAPLASFAGRLT--NTFC
::: .. : : : : : : : : : ::: . ...:
NP_061 LWLDAPRSCRMEPPDGP---PPPPQQQP---PPPPQPPQPAPQATSCSFAQNIKEESSYC
120 130 140 150 160 170
90 100 110 120 130 140
pF1KE0 A-GLGQAVPSMVALTTALPSFAE--PPDAFYGPQELAAAAAAAAATAARNNPEPGGRRPE
.. :.. : .. : : . :::. :...... . : . : .
NP_061 LYDSADKCPKVSATAAELAPFPRGPPPDGC----ALGTSSGVPVPGYFRLSQAYGTAKGY
180 190 200 210 220
150 160 170 180 190 200
pF1KE0 GGLEADELLPAREKVAEPPPPPPPHFSETFPSLPAEGKVYSSDEEKLEASAGDPAGSEQE
:. . :.. : : : :: . .: : :.. .. .:. : :. .
NP_061 GSGGGG----AQQLGAGPFPAQPPGRGFDLPPALASGSADAARKERALDSPPPPTLAC--
230 240 250 260 270 280
210 220 230 240 250
pF1KE0 EEGSGGDSEDDGFLDSSAGGPGALLGPKPKL-------KGSLGTGAEEGAPVTAGVTAPG
:::: :. : .:... . :.: :. : :::.. :.: . .:: .
NP_061 --GSGGGSQGDEEAHASSSA-AEELSPAPSESSKASPEKDSLGNSKGENA--ANWLTAKS
290 300 310 320 330
260 270 280 290 300 310
pF1KE0 GKSRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKR
: :..: .:..: ::::::: . ::. .: .:.....:.. :::::::::: : :.
NP_061 G--RKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKK
340 350 360 370 380 390
320 330 340 350 360
pF1KE0 IKAGNVSSRSGEPVRNPKIVVPIPVHVNRFAVRSQHQQMEQGARP
.. :
NP_061 MNRENRIRELTANFNFS
400 410
363 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 04:28:16 2016 done: Tue Nov 8 04:28:18 2016
Total Scan time: 9.540 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]