FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0612, 363 aa
  1>>>pF1KE0612 363 - 363 aa - 363 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.3501+/-0.000839; mu= 2.0055+/- 0.051
 mean_var=315.6413+/-65.269, 0's: 0 Z-trim(117.6): 154  B-trim: 0 in 0/52
 Lambda= 0.072190
 statistics sampled from 18213 (18383) to 18213 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.824), E-opt: 0.2 (0.565), width:  16
 Scan time:  2.900

The best scores are:                                      opt bits E(32554)
CCDS43682.1 GBX1 gene_id:2636|Hs108|chr7           ( 363) 2466 269.5 3.1e-72
CCDS2515.1 GBX2 gene_id:2637|Hs108|chr2            ( 348)  700 85.6   7e-17


>>CCDS43682.1 GBX1 gene_id:2636|Hs108|chr7                (363 aa)
 initn: 2466 init1: 2466 opt: 2466  Z-score: 1410.3  bits: 269.5 E(32554): 3.1e-72
Smith-Waterman score: 2466; 100.0% identity (100.0% similar) in 363 aa overlap (1-363:1-363)

               10        20        30        40        50        60
pF1KE0 MQRAGGGSAPGGNGGGGGGGPGTAFSIDSLIGPPPPRSGHLLYTGYPMFMPYRPLVLPQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MQRAGGGSAPGGNGGGGGGGPGTAFSIDSLIGPPPPRSGHLLYTGYPMFMPYRPLVLPQA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 LAPAPLPAGLPPLAPLASFAGRLTNTFCAGLGQAVPSMVALTTALPSFAEPPDAFYGPQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 LAPAPLPAGLPPLAPLASFAGRLTNTFCAGLGQAVPSMVALTTALPSFAEPPDAFYGPQE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 LAAAAAAAAATAARNNPEPGGRRPEGGLEADELLPAREKVAEPPPPPPPHFSETFPSLPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 LAAAAAAAAATAARNNPEPGGRRPEGGLEADELLPAREKVAEPPPPPPPHFSETFPSLPA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 EGKVYSSDEEKLEASAGDPAGSEQEEEGSGGDSEDDGFLDSSAGGPGALLGPKPKLKGSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 EGKVYSSDEEKLEASAGDPAGSEQEEEGSGGDSEDDGFLDSSAGGPGALLGPKPKLKGSL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 GTGAEEGAPVTAGVTAPGGKSRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 GTGAEEGAPVTAGVTAPGGKSRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 SEVQVKIWFQNRRAKWKRIKAGNVSSRSGEPVRNPKIVVPIPVHVNRFAVRSQHQQMEQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 SEVQVKIWFQNRRAKWKRIKAGNVSSRSGEPVRNPKIVVPIPVHVNRFAVRSQHQQMEQG
              310       320       330       340       350       360

          
pF1KE0 ARP
       :::
CCDS43 ARP
          

>>CCDS2515.1 GBX2 gene_id:2637|Hs108|chr2                 (348 aa)
 initn: 801 init1: 639 opt: 700  Z-score: 416.5  bits: 85.6 E(32554): 7e-17
Smith-Waterman score: 947; 51.9% identity (66.7% similar) in 360 aa overlap (20-363:17-348)

               10        20        30         40        50         
pF1KE0 MQRAGGGSAPGGNGGGGGGGPGTAFSIDSLIGPPP-PRSGHLLYTGYPMFMPYRPLVLPQ
                          : .:::::::::: :: :  ::..::::::::::::.::: 
CCDS25    MSAAFPPSLMMMQRPLGSSTAFSIDSLIGSPPQPSPGHFVYTGYPMFMPYRPVVLPP
                  10        20        30        40        50       

      60              70        80        90       100       110   
pF1KE0 ALAPAP-LPAG-----LPPLAPLASFAGRLTNTFCAGLGQAVPSMVALTTALPSFAEPPD
          : : :: .     :::  :  .. . : . ::..:.:..    :::..:  .:  : 
CCDS25 PPPPPPALPQAALQPALPPAHPHHQIPS-LPTGFCSSLAQGM----ALTSTL--MATLPG
        60        70        80         90           100         110

            120       130       140       150            160       
pF1KE0 AFYG-PQELAAAAAAAAATAARNNPEPGGRRPEGGLEADELLPAREK-----VAEPPPPP
       .: . ::.  ::::   :     .: :::    :...  : : :  .     .:.     
CCDS25 GFSASPQHQEAAAARKFAP----QPLPGG----GNFDKAEALQADAEDGKGFLAKEGSLL
              120           130           140       150       160  

       170        180       190       200       210       220      
pF1KE0 PPHFSETFP-SLPAEGKVYSSDEEKLEASAGDPAGSEQEEEGSGGDSEDDGFLDSSAGGP
           .::   :: .  .  ..:: :.:    :: :   .::. . .:. :   :..  : 
CCDS25 AFSAAETVQASLVGAVRGQGKDESKVE---DDPKG---KEESFSLESDVDYSSDDNLTGQ
            170       180          190          200       210      

        230       240       250         260       270       280    
pF1KE0 GALLGPKPKLKGSLGTGAEEGAPVT--AGVTAPGGKSRRRRTAFTSEQLLELEKEFHCKK
       .:     :      : . ::  : .  :: :.  ::.:::::::::::::::::::::::
CCDS25 AAHKEEDP------GHALEETPPSSGAAGSTTSTGKNRRRRTAFTSEQLLELEKEFHCKK
        220             230       240       250       260       270

          290       300       310       320       330       340    
pF1KE0 YLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRIKAGNVSSRSGEPVRNPKIVVPIPVH
       ::::::::::::::::::::::::::::::::::.::::..:..::: ::::::::::::
CCDS25 YLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRVKAGNANSKTGEPSRNPKIVVPIPVH
              280       290       300       310       320       330

          350       360   
pF1KE0 VNRFAVRSQHQQMEQGARP
       :.:::.::::::.:: :::
CCDS25 VSRFAIRSQHQQLEQ-ARP
              340         




363 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 04:28:15 2016 done: Tue Nov  8 04:28:16 2016
 Total Scan time:  2.900 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]