FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0592, 476 aa
  1>>>pF1KE0592 476 - 476 aa - 476 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8581+/-0.000479; mu= 20.2853+/- 0.029
 mean_var=63.5520+/-13.324, 0's: 0 Z-trim(107.9): 49  B-trim: 870 in 1/49
 Lambda= 0.160883
 statistics sampled from 15916 (15933) to 15916 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.528), E-opt: 0.2 (0.187), width:  16
 Scan time:  7.600

The best scores are:                                      opt bits E(85289)
NP_037468 (OMIM: 609213,617056) protein transport  ( 476) 3083 725.0 1.1e-208


>>NP_037468 (OMIM: 609213,617056) protein transport prot  (476 aa)
 initn: 3083 init1: 3083 opt: 3083  Z-score: 3867.4  bits: 725.0 E(85289): 1.1e-208
Smith-Waterman score: 3083; 100.0% identity (100.0% similar) in 476 aa overlap (1-476:1-476)

               10        20        30        40        50        60
pF1KE0 MAIKFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_037 MAIKFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSAD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_037 PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 MIITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGLIVLLLDELLQKGYGLGSGIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_037 MIITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGLIVLLLDELLQKGYGLGSGIS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 LFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYRQNLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_037 LFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYRQNLP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 NLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_037 NLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSN
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 LYVISQMLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCYYLSPPESFGSVLEDPVH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_037 LYVISQMLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCYYLSPPESFGSVLEDPVH
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE0 AVVYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_037 AVVYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTA
              370       380       390       400       410       420

              430       440       450       460       470      
pF1KE0 AAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQSEVGSMGALLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_037 AAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQSEVGSMGALLF
              430       440       450       460       470      




476 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 20:55:32 2016 done: Wed Nov  2 20:55:34 2016
 Total Scan time:  7.600 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]