FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0555, 377 aa
  1>>>pF1KE0555 377 - 377 aa - 377 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2405+/-0.000834; mu= 16.5140+/- 0.050
 mean_var=55.9507+/-10.964, 0's: 0 Z-trim(106.2): 18  B-trim: 168 in 1/49
 Lambda= 0.171463
 statistics sampled from 8836 (8839) to 8836 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.648), E-opt: 0.2 (0.272), width:  16
 Scan time:  2.780

The best scores are:                                      opt bits E(32554)
CCDS4116.1 PGGT1B gene_id:5229|Hs108|chr5          ( 377) 2586 647.8 4.7e-186
CCDS669.1 RABGGTB gene_id:5876|Hs108|chr1          ( 331)  452 119.8 3.4e-27
CCDS9769.1 FNTB gene_id:2342|Hs108|chr14           ( 437)  337 91.4 1.6e-18


>>CCDS4116.1 PGGT1B gene_id:5229|Hs108|chr5               (377 aa)
 initn: 2586 init1: 2586 opt: 2586  Z-score: 3453.7  bits: 647.8 E(32554): 4.7e-186
Smith-Waterman score: 2586; 100.0% identity (100.0% similar) in 377 aa overlap (1-377:1-377)

               10        20        30        40        50        60
pF1KE0 MAATEDERLAGSGEGERLDFLRDRHVRFFQRCLQVLPERYSSLETSRLTIAFFALSGLDM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MAATEDERLAGSGEGERLDFLRDRHVRFFQRCLQVLPERYSSLETSRLTIAFFALSGLDM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 LDSLDVVNKDDIIEWIYSLQVLPTEDRSNLNRCGFRGSSYLGIPFNPSKAPGTAHPYDSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 LDSLDVVNKDDIIEWIYSLQVLPTEDRSNLNRCGFRGSSYLGIPFNPSKAPGTAHPYDSG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 HIAMTYTGLSCLVILGDDLSRVNKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 HIAMTYTGLSCLVILGDDLSRVNKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASC
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 ICYMLNNWSGMDMKKAITYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 ICYMLNNWSGMDMKKAITYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 SEKELNRIKRWCIMRQQNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 SEKELNRIKRWCIMRQQNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 TQDRLVGGFAKWPDSHPDALHAYFGICGLSLMEESGICKVHPALNVSTRTSERLLDLHQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 TQDRLVGGFAKWPDSHPDALHAYFGICGLSLMEESGICKVHPALNVSTRTSERLLDLHQS
              310       320       330       340       350       360

              370       
pF1KE0 WKTKDSKQCSENVHIST
       :::::::::::::::::
CCDS41 WKTKDSKQCSENVHIST
              370       

>>CCDS669.1 RABGGTB gene_id:5876|Hs108|chr1               (331 aa)
 initn: 463 init1: 252 opt: 452  Z-score: 601.7  bits: 119.8 E(32554): 3.4e-27
Smith-Waterman score: 477; 30.3% identity (60.6% similar) in 317 aa overlap (40-354:39-323)

      10        20        30        40        50        60         
pF1KE0 AGSGEGERLDFLRDRHVRFFQRCLQVLPERYSSLETSRLTIAFFALSGLDMLDSLDVVNK
                                     :   :  :..  ...:. .:.. .:  .:.
CCDS66 IIKSDAPDTLLLEKHADYIASYGSKKDDYEYCMSEYLRMSGIYWGLTVMDLMGQLHRMNR
       10        20        30        40        50        60        

      70        80        90       100       110       120         
pF1KE0 DDIIEWIYSLQVLPTEDRSNLNRCGFRGSSYLGIPFNPSKAPGTAHPYDSGHIAMTYTGL
       ..:. .: : :          ..::       ::  . .. :         :. .: ...
CCDS66 EEILAFIKSCQ----------HECG-------GISASIGHDP---------HLLYTLSAV
       70                  80               90                100  

     130       140       150       160       170       180         
pF1KE0 SCLVILGDDLSRVNKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWS
       . :. : :... .. .  .  ...:: ::::: .   : : : :: .::     .:.. .
CCDS66 QILT-LYDSINVIDVNKVVEYVKGLQKEDGSFAGDIWG-EIDTRFSFCAVATLALLGKLD
             110       120       130        140       150       160

     190       200       210       220       230       240         
pF1KE0 GMDMKKAITYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIK
       .....::: ..   :..:.:..   : :::.:. .:  . : . ..:..: :    . . 
CCDS66 AINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNS----DLLG
              170       180       190       200       210          

     250         260       270       280       290       300       
pF1KE0 RWCIMRQ--QNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVG
        :   ::  ..: .:::.:  :.:::.:: :.::..  ... . :: ::.::. ::. .:
CCDS66 WWLCERQLPSGGLNGRPEKLPDVCYSWWVLASLKIIGRLHWIDREKLRNFILACQDEETG
        220       230       240       250       260       270      

       310       320       330       340       350       360       
pF1KE0 GFAKWPDSHPDALHAYFGICGLSLMEESGICKVHPALNVSTRTSERLLDLHQSWKTKDSK
       :::  : .  : .:. ::: ::::. :  :  :.:.. .  .. .:.             
CCDS66 GFADRPGDMVDPFHTLFGIAGLSLLGEEQIKPVNPVFCMPEEVLQRVNVQPELVS     
        280       290       300       310       320       330      

       370       
pF1KE0 QCSENVHIST

>>CCDS9769.1 FNTB gene_id:2342|Hs108|chr14                (437 aa)
 initn: 324 init1: 132 opt: 337  Z-score: 446.0  bits: 91.4 E(32554): 1.6e-18
Smith-Waterman score: 392; 28.4% identity (55.6% similar) in 338 aa overlap (17-336:70-377)

                             10        20        30        40      
pF1KE0               MAATEDERLAGSGEGERLDFLRDRHVRFFQRCLQVLPERYSSLETS
                                     :: . :..: ....: :. : . :  :..:
CCDS97 VETVTSIEQAKVEEKIQEVFSSYKFNHLVPRLVLQREKHFHYLKRGLRQLTDAYECLDAS
      40        50        60        70        80        90         

         50        60        70        80        90       100      
pF1KE0 RLTIAFFALSGLDMLDSLDVVNKDDIIEWIYSLQVLPTEDRSNLNRCGFRGSSYLGIPFN
       :  . .. : .:..::        . :  : . .:    .  .  . :: :        .
CCDS97 RPWLCYWILHSLELLD--------EPIPQIVATDVCQFLELCQSPEGGFGG--------G
     100       110               120       130       140           

        110       120       130       140         150       160    
pF1KE0 PSKAPGTAHPYDSGHIAMTYTGLSCLVILGDDLSR--VNKEACLAGLRALQLEDGSFCAV
       :.. :         :.: ::.... : :.: . .   .:.:  :  : .:.  ::::  .
CCDS97 PGQYP---------HLAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFL-M
                    150       160       170       180       190    

          170       180       190       200       210       220    
pF1KE0 PEGSENDMRFVYCASCICYMLNNWSGMDMKKAITYIRRSMSYDNGLAQGAGLESHGGSTF
         :.: :.: .:::. .  . :  .   .. .  .: : .....:..   :.:.::: ::
CCDS97 HVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTF
           200       210       220       230       240       250   

          230       240       250          260       270       280 
pF1KE0 CGIASLCLMGKLEEVFSEKELNRIKRWCIMRQ---QNGYHGRPNKPVDTCYSFWVGATLK
       ::.:.: .. : :. .. : :    .:   ::   ..:..:: :: :: ::::: .. : 
CCDS97 CGLAALVIL-KRERSLNLKSL---LQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLP
           260        270          280       290       300         

                        290         300       310       320        
pF1KE0 LLK-----------IFQYTNFEKN--RNYILSTQDRLVGGFAKWPDSHPDALHAYFGICG
       ::.            ...  :...  ..:::   .  .::.   : .  :  :. . . :
CCDS97 LLHRALHAQGDPALSMSHWMFHQQALQEYILMCCQCPAGGLLDKPGKSRDFYHTCYCLSG
     310       320       330       340       350       360         

      330       340       350       360       370                  
pF1KE0 LSLMEESGICKVHPALNVSTRTSERLLDLHQSWKTKDSKQCSENVHIST           
       ::. .. :                                                    
CCDS97 LSIAQHFGSGAMLHDVVLGVPENALQPTHPVYNIGPDKVIQATTYFLQKPVPGFEELKDE
     370       380       390       400       410       420         




377 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 03:41:32 2016 done: Mon Nov  7 03:41:32 2016
 Total Scan time:  2.780 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]